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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009725 ID=TCONS_00009725|Name=TCONS_00009725|organism=Clytia hemisphaerica|type=transcript|length=1650bp
AGTAATTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGA
GGAAAAtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTT
TGCTTTGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACT
TAATGGACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACA
TTCATAAcgattttttcattaaatttcagCCATATTTTCACCTGTACGAA
ACTTTCTGGCCGACCACTGAACAATCATGGAGTGACCCCGTATGTGTTGA
TCCCCGAAGAGAAAGaaatCGAAGTGACGAAAGGTCTGCTGTTGGCGCTT
CTACCAACGCTTTCTGCAGAATGGATCGTTTCTATGAAGATACGTTTATT
TAGGGGGCTGGACACGAGTTTTACATTTTGTAGATTATTCCATATGACGA
AGGGTGGTCAAAATACTGTGTACGGTGACAGGACCCCTTTAATATTAATC
CGAGCGTCTGACAATGTTATCCAAACAAACACAGCAATGAACAACATAAA
ATCACGCAGCACATTGCTCACGAACAACCCTGTGCAAATCAACCAAACGT
TATCCCTTGAAATACACCAAAGATACATTCAAAACGGCAATCATCGCTAT
TTTATCATCATAAATGGAGTGGAAGTACACAGCGAGGTGAATTATAGTGG
ACAACAGTTTCACGATATTAAGGTTTATGCGACATCATCTGGCGGAAACA
CTGTTACAGCATGTCCTGCAATGCTTAGTGATCTAAAACTTACTAATTTC
CTTTGAAGtccgaagaagaaaattaataatGTATGTATGGAAGTGTCCAA
AAAAAGAAtagtggaaaaaaatatttattctcaATATCTGTTGAGCTAGA
TTCTTGGGAATGTGTGTCTGTATGCCCTTGTAACACCCCTGTTTCGATGT
ACCGATGAAGTTTTGAAATCCACCGGGGTGGTTATGAAAAAGGTGAAATT
TCAtttacaatcagtgccataacatattggcacttttggctagtttacca
tttttcgaaaattgaagtttgagcgagaatgtcaatttcgggccttcaac
ttgatttcaaggattatttcgatctgggagggacttattggtttctaggc
tatatttcaagccctactggaccatttttgagcttttggatcctcagatc
atAAGGTCCTAAgacttaagtctagcgttaaaactcagggttaaaactct
accctttgaacctactttagagcacttgcaaatcgattgtggttcacacc
ccggtggatttctttttttgtgccaagtatttcgtcTGAAATTTCTAGca
ccaaaaaataatttttattttcttcttcacctaccttatcggcccttttt
acacgcTGGCCCtcattggcgttatttttgcgTAATAAGGGTTGGTGTTA
aaaaagggccggtgtaaaaaaggccaagattttgcaattttaacctaaaa
gcggcgttaattttttatcattatttcttaatttaaagaattttagatAT
GATTCGAAgatgaaaattatccattgtttcattccatatttaaaacttta
gtgaaatatttgatatatttaaaaatcagtgattttcaatggaattttca Run BLAST on NCBI transcript from alignment at sc0000098:588437..592617+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009725 ID=TCONS_00009725|Name=TCONS_00009725|organism=Clytia hemisphaerica|type=transcript|length=4181bp|location=Sequence derived from alignment at sc0000098:588437..592617+ (Clytia hemisphaerica)
AGTAATTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGA
GGAAAAtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTT
TGCTTTGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACT
TAATGGACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACA
TTCATAAcgattttttcattaaatttcagCCATATTTTCACCTGTACGgt
aaatattttaagattttttttgagattatttGAATATTTCAGTAGAATTT
AGAAAACTGATACCTTATTACACGGATAAtacaacggccttgaaattaac
acgcaaaaaatcaacacgaattttatttgctttttcaaggacaccacggc
tggttttaattaagggggtttttattaacacgaaatttttcaattcgtgt
taataaaatgactagtaatattcatgtaataagATATAcgattttttaca
tatttttttctacaagcataacgtttataagcatatacaggCTCAGTGTC
TGGTACCTACataatggctctattgtttaagagCAATGGAATggtaagca
taatgcgagcgaGGGGTAGACACTTTCTTAACAATTTCttattatcttta
tttttttgccaaaaaattccAATACGcttgaattaaaattttaagGACCA
AATTAttccaaaaagattttctttcaaaCTTTCTTGTCAGTTGTTACCTA
AAAACAGGCTCAGTTAGGAAGCTATATTTTGGAATCAAACTCAAACTATG
CTTGTTATAAGcttattttctgaaaagaatTGGTTCattaaaatggaaaa
gaaaaatgaacctTCCCAAGTAAATCCAGAACAATGACCAATGACTAAAG
CTCActgatatgtttttttttttcatccaagCCGGGAATTCACTAAGCCT
TTAAAcatttatgcttataaaaaaacattttttaacaagaaaattttgtt
ttgatgatgtaAAAAGTCTTGTTTGAAATCTTTTAATATTCTACTCAAtc
attttcttccaaaatttgcagtattCCAGAAATGAAACCATCGTTACTGT
TTTGTTTTGCTGACTATTCTCAACTTTGAGCCCTGCTTCTCTCCGTatac
acttttttctttataagaacaatttgattaAAACAATGAGGTTCAAGAAT
ACCAAAgcttaagaacaatttaagaacaatcttcGGCCTTGAATAGTTGG
ATTATTAGCAAATTaaggaaaagtaaaagaatacatgaaattaagaacag
aataaaaacaatttgaggctcaaaattcccaaaaataagaacaacagAGC
CTCATTGAAAATttgctggttcttataaaaaaagagtgtcaATTAGATTG
CTCATTCATTCTTCATTTTGCTTTCATTAGAAACTTTCTGGCCGACCACT
GAACAATCATGGAGTGACCCCGTATGTGTTGATCCCCGAAGAGAAAGGTA
CGTTATAGTAAAgggaatttgtaaaatcgctcgacttttttagtcaaagc
acttgttatacatttttggaaagataagggataggggaatcaaaataaga
taatttccaatttttctcgGTTTTTgagacaaatatgacggtctcaggca
aaaatcatagggtcaaaatttaatggaaattTTAGCTTTAGAAaagagag
acctgttgtatatttttgaaaagctctcaaaaaattaagattagagatat
attacGAGTATGTATGATTTCTCTACCTAACTCAACAAATTTCTCCCTAC
TGTTAGTAAAGCAAaataagacacccctgtctcacagcccccgTGTAACT
TCTTCCCGCACAGCAGGGATGAAATTTCTATCGTAATTCCAGTGGGAAAC
ACACGGGAAGAAAAATTGGTTTGAACAATTAATacacccttgtgtcacag
accctgTTGGAATCcctacccactggaaaatttggctgaagtttcgtccc
cggtgggaagaataccctggaattttaaCCTCACTGGACAATTGACTATc
ctcatttgaaattcaatgaaaaaatgCATTCAAAAACTATCCCCACTGGA
CTCGAGTGATTAagggcaagtctcaaaaacctaacagtttaccctaagtt
tttgCGACCAATAACAGCCAGATTCAGAAatccacttagggctctaaagt
acctctataccttGAAGTTTATGAATCACGCTATTTTTTACATAGGGAAC
AAAAGAACTTTTAACCCAATGGGGATTTCGATGGAAATTGTCATCCCCAT
TGGGAGAAAAAGAAAGAAGGTGTTCCCATCTTCCTGGGATGGGgcttttt
ttggtgattcctgacatgttcctgaacctctgtacaaaatttcatctcta
caccatttttgtcccGGTTTTGGCGGTTTATGACCTGATTCTACCTGACa
gcaaatttgttcgatttttcagtcattttgaatttattttatagaaatCG
AAGTGACGAAAGGTCTGCTGTTGGCGCTTCTACCAACGCTTTCTGCAGAA
TGGATCGTTTCTATGAAGATACGTTTATTTAGGGGGCTGGACACGAGTTT
TACATTTTGTAGATTATTCCATATGACGAAGGGTGGTCAAAATACTGTGT
ACGGTGACAGGTATGATAAATCATTTTCCACGTTCtttataacgttagat
gaatgttgaaacaacgttgtgtagcAGCTGGGCTCCATCCAAAACAAAGT
AAACAAGCTCTGATTCTGATTTGACCTTTGGTCAGCTTGAACATCTACTC
TCGGATActctaattaattttttgaaaattttccaaccaggacattttta
ttccaccccctCCCTccctaggctacgtcatatcttcctttgtttcgagc
gtaaaacttcTACTCTAGAGTAATGCGTAAAAGActtaaaagcctggagc
tgtctattgtgtagactagttTTGCGGTAGAAGTttgtttattcttttat
ttccaTCGACAGGACCCCTTTAATATTAATCCGAGCGTCTGACAATGTTA
TCCAAACAAACACAGCAATGAACAACATAAAATCACGCAGCACATTGCTC
ACGAACAACCCTGTGCAAATCAACCAAACGTTATCCCTTGAAATACACCA
AAGATACATTCAAAACGGCAATCATCGCTATTTTATCATCATAAATGGAG
TGGAAGTACACAGCGAGGTGAATTATAGTGGACAACAGTTTCACGATATT
AAGGTTTATGCGACATCATCTGGCGGAAACACTGTTACAGCATGTCCTGC
AATGCTTAGTGATCTAAAACTTACTAATTTCCTTTGAAGtccgaagaaga
aaattaataatGTATGTATGGAAGTGTCCAAAAAAAGAAtagtggaaaaa
aatatttattctcaATATCTGTTGAGCTAGATTCTTGGGAATGTGTGTCT
GTATGCCCTTGTAACACCCCTGTTTCGATGTACCGATGAAGTTTTGAAAT
CCACCGGGGTGGTTATGAAAAAGGTGAAATTTCAtttacaatcagtgcca
taacatattggcacttttggctagtttaccatttttcgaaaattgaagtt
tgagcgagaatgtcaatttcgggccttcaacttgatttcaaggattattt
cgatctgggagggacttattggtttctaggctatatttcaagccctactg
gaccatttttgagcttttggatcctcagatcatAAGGTCCTAAgacttaa
gtctagcgttaaaactcagggttaaaactctaccctttgaacctacttta
gagcacttgcaaatcgattgtggttcacaccccggtggatttcttttttt
gtgccaagtatttcgtcTGAAATTTCTAGcaccaaaaaataatttttatt
ttcttcttcacctaccttatcggccctttttacacgcTGGCCCtcattgg
cgttatttttgcgTAATAAGGGTTGGTGTTAaaaaagggccggtgtaaaa
aaggccaagattttgcaattttaacctaaaagcggcgttaattttttatc
attatttcttaatttaaagaattttagatATGATTCGAAgatgaaaatta
tccattgtttcattccatatttaaaactttagtgaaatatttgatatatt
taaaaatcagtgattttcaatggaattttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009725-exon-sc0000098-1491911889:588437..588684 | TCONS_00009725-exon-sc0000098-1491911889:588437..588684 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1510915933:588437..588684 | TCONS_00009725-exon-sc0000098-1510915933:588437..588684 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1575043694:588437..588684 | TCONS_00009725-exon-sc0000098-1575043694:588437..588684 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1491911889:589867..589933 | TCONS_00009725-exon-sc0000098-1491911889:589867..589933 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1510915933:589867..589933 | TCONS_00009725-exon-sc0000098-1510915933:589867..589933 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1575043694:589867..589933 | TCONS_00009725-exon-sc0000098-1575043694:589867..589933 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1491911889:590931..591096 | TCONS_00009725-exon-sc0000098-1491911889:590931..591096 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1510915933:590931..591096 | TCONS_00009725-exon-sc0000098-1510915933:590931..591096 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1575043694:590931..591096 | TCONS_00009725-exon-sc0000098-1575043694:590931..591096 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1491911889:591449..592617 | TCONS_00009725-exon-sc0000098-1491911889:591449..592617 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1510915933:591449..592617 | TCONS_00009725-exon-sc0000098-1510915933:591449..592617 | Clytia hemisphaerica | exon |
| TCONS_00009725-exon-sc0000098-1575043694:591449..592617 | TCONS_00009725-exon-sc0000098-1575043694:591449..592617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:588437..592617 + |
Blast
The following BLAST results are available for this feature:
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