XLOC_005437 (gene) - C. hemisphaerica

Overview
NameXLOC_005437
Unique NameXLOC_005437
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000098:583342..592617+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005437 ID=XLOC_005437|Name=XLOC_005437|organism=Clytia hemisphaerica|type=gene|length=9276bp|location=Sequence derived from alignment at sc0000098:583342..592617+ (Clytia hemisphaerica)
attttatagAAATCGAAGTGACGAAAGGTCTGCTGTTGGCGCTTCTACCA
ACGCTTTCTGCAGAATGGATCGTTTCTATGAAGATACGTTTATTTAGGGA
ACTGGACACGAGTTTTACATTTTGTAGATTATTCCATATGACGAAGGGTG
GCCAAAATACTGTGTACGGTGACAGGTAAcaacaacgtccatataacgct
aggtgaacgttaaaacaacgtcaaTGGCATCAAATTTGACTTTCACGAAT
TTTAGAGtgttaccttatcggggaaaacttcgtcgggaaaaagtgacgaa
attttggccaagtgacgaatatttttccccgacgaaaatttttcccgacg
aaaattttccctgacgaagttttccccgataaggtattttcaATTTGCTG
GCAAAAGCAAAatgaaataaaccagccgaggctggaaggtcagccaatag
agcttagctagatagctttaataagtaggttaacagatgtaagagatgta
cttgaaacagagtagactaaaaatgttgaataatgtaaaaaatgtgaaac
atttgataacttgatttaaaattatttaaaacaagcctgagagctccttc
aACCCTCCCCCCCACGAGAAgatcaaagtatacttctctttagcattgca
gcactgtttctatgacatcaatagagcttagctagatagctttaataagt
aggttaacagatgtaagagatgtactgaaacagagtagactaaaaatgtt
gaataatgtaaaaaatgtgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNagagtgtgcatgttgtgtaacttgacggtataattcattaa
attctagaaaccatttttcataactttctgcagtccgctttctgcaagtc
tgataagagatgcataaactgttatcgccattcattccattccatcattc
agtcaaaacgtgcaccaaggttagaaaaggttagaaaaacacaatctgcg
tccggaactgcgtgaaaaatagtttgatcaatttcaacaggaactgtata
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtttcaaatcgaagtagcgagccgcatgc
taatggagagtaaaccgaaaaccagtttatccacggtttctcaatttctt
aattcggatcagtccacatgCCCatggattccctttcaacaagatgtagc
tgctttttaaaagaaaaatattttcgaccgaccgagtGACCCCCACTTTt
caaagtagaaatgacgggaaccaaataattttttgtgattcgccttatca
aacacgtccaaaccaagtccaaaaaagcacgattgcatccagtctttatc
aaatttagacagtagctgtacttttgtaaactttgtcaaattccaataac
attataacaccatcaatcctacctagaggcaaacaagaaaaatatgtttt
tattgcaaaaactaataaaaagcagcaataaaaagtatcagaaataaatt
caacataaacaaaaacttgagcaaacggctttaaaccttcaaaagatgta
gaaaaagaatccccttgatgaaaatcatgtgtttgatttgccgagNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGtctttgatttgccgagttaaaaaaataa
atgacagaaatagaagcttgcaacagatttacactggaaatactttggta
caacactgacttatcgcttgagccgccatttTGAAACACCACTTTAtgaa
aacaacgcacgctaaaagtacccaaaaagttaacccgttcggaaggaaga
aagtttagaaatcaaagtgagatcgggaaatcggattttttttttgccgt
cttatgatgatggaagaagtagtagtagaagaaaattttacctatttgaa
tgctcagcttaggttGACCAATAACATTCTAAAGTTCGCGAAAGTTaaat
ttgtgaaattttgcgattttgcaaacctcgcgaaagtttctgtccgcgaa
agtttctgctcttaAAGTATCAGAAAACGATATAAAACTTAAAAGCCGAT
AATACACAGGAGACGAAGTTGGTGGGCTAGCATAAACGTTTATCAGCCCC
TTGGTTCACTGACACATTTTCCTGTACTCATTCTAAGTAGCTAAATTAAT
TTCAATACGGCCGGAAAGTTTAGTCGGTAGAACAATAAACCTTATAAACA
AAGGCTTGTGGATTTGATCTCAAGCAAATAAGAAGTTTGGATTGGATATT
CTGGTTTGGCGCTCCCCCTAAGCATTCGACCACCCAGGTTTAGTACAAAT
AGCAAAGGGGACAAGCTCCTTCACTCCTCggatccaatgtgaaaaagctt
gtgaattaaaattgatgagtaagcaaattatatcactcttatttaaaaac
aaaacctttaaaacagTGACTAAAACTTGCTAAAACTTTCTAAAAAACGA
ATCAATGAAAAACCATAAACTCACAATATCTTGATAGTATcctgtatata
tttttattggAGGACCAAGTACACTTACTCACTTATTTACAACCCTTTTT
TTTTTAGGACGCCCTTGGTATCAATCCGTACTGCTGACAACGTTTTACAA
ATCTCCACTGCATTAAATGGTAAAAAATCCCATAATGCTTTATTGATCAA
CAATGCATTGCAAATCAATCAAACTATCGCATTGGAAATACACCAAAGAT
ACGTCAAAAACGGGAATTAcagattttatattttgtttgatGGAATTGAA
ATTGTGGATGATATGAATTACAATGCTGAACAATTTCATGATATCAAAGT
TTATGCGACTTCTTATGGAGGTGAAAATTCTGTTGCATGCCCTGTTTTTT
TAAGTGATCTACAAGTAACAAATTTTCTCTGACGAGGTTCCAAAAAGGCA
CCCTGATGAGGTTCCCGAGCGGCACCCCTTATAATGACACCACGCAGGAT
TCTTtctttccgaaataccgaattgCTCATCGCTAGCCCGTTATCTTTCG
TCCTGCCACGCATCATGTCAAAATTGTGATCACGCAAGAAGATTTTCACT
ATCACAGAGGAAGAAAAGCCCCGATCACTCCATCACGCAACCCGCGAGGG
CTTCTGTGATGGTTGCTTAGTAATAATCTTAGTTGATCGTTTAGGAAGAG
TTTGGCACAACCGTTGGTGTAAAACTATCTATTTTATACTTTACCATGAA
GTGGAACTTCTATTTTCCCTAGGGTTGGGTTGAAGGAGTGAAAACTATTA
TAATTTTACGCCACATCGTCATCTAAAAgcgattttcttttttagatttt
aaagatttttgcaCATTTCAATCATTTAGCAGTTCTTCTGTGGATTTatt
tacaaacaaacaaagtgattttactttttgttacaaaataaacatactaa
cttatgaaaacaaaacaatatgataactatatacaattttttattataac
atctaaaatttttggaggcttcagatgttcttaactttttgacttttaaa
tctaaaagttttctcaatatgttttcattttcaccattttttccattttg
tgaagtttttttttccGTAACACtaaggtgttttagagtccacaaagcct
taaaatgttcttaatatgttctggTCTAAATCGCAGACCTTTACGAAGCC
AGCACAGATAGCATATAAGTAGCACGAATCCGATAGTGTGGATGCCGGGA
TCATCAAGTGGTTTGGGATATTTGACATGTGGAatccttctattgtcctg
agcaaaacctaaaaatatttttgcctaaatatttCTCAAAGTCGAAACAA
TTAAATTTAAAAACGTAAGAACCGTGTGAGAACCCATTtgtagaaatttc
aaattgtgatatctCGACTTTAGAAAATAGTTACCAAAACACCTGATAAT
CCCTTTAATATGTGTTCTtgtacagtttgttcttatcaaaaatcaTATAA
TCTCATAATGTATCAATAACCTTGGATTTATATCATTCAAGAGACACACC
TTTATTCTCAACAGTATCGAATTACGAGTTAGTAAAGTAAAGGATATTTT
CACATTTTCCAATTGAGATGTTTTAGAAACGAATTATTTCAATATTAAAT
TGGACACCGTTTCAAATATTTGTAACCTGCAGTGAAATCGCCGTTAGTAA
TTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGAGGAAA
AtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTTTGCTT
TGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACTTAATG
GACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACATTCAT
AAcgattttttcattaaatttcagCCATATTTTCACCTGTACGgtaaata
ttttaagattttttttgagattatttGAATATTTCAGTAGAATTTAGAAA
ACTGATACCTTATTACACGGATAAtacaacggccttgaaattaacacgca
aaaaatcaacacgaattttatttgctttttcaaggacaccacggctggtt
ttaattaagggggtttttattaacacgaaatttttcaattcgtgttaata
aaatgactagtaatattcatgtaataagATATAcgattttttacatattt
ttttctacaagcataacgtttataagcatatacaggCTCAGTGTCTGGTA
CCTACataatggctctattgtttaagagCAATGGAATggtaagcataatg
cgagcgaGGGGTAGACACTTTCTTAACAATTTCttattatctttattttt
ttgccaaaaaattccAATACGcttgaattaaaattttaagGACCAAATTA
ttccaaaaagattttctttcaaaCTTTCTTGTCAGTTGTTACCTAAAAAC
AGGCTCAGTTAGGAAGCTATATTTTGGAATCAAACTCAAACTATGCTTGT
TATAAGcttattttctgaaaagaatTGGTTCattaaaatggaaaagaaaa
atgaacctTCCCAAGTAAATCCAGAACAATGACCAATGACTAAAGCTCAc
tgatatgtttttttttttcatccaagCCGGGAATTCACTAAGCCTTTAAA
catttatgcttataaaaaaacattttttaacaagaaaattttgttttgat
gatgtaAAAAGTCTTGTTTGAAATCTTTTAATATTCTACTCAAtcatttt
cttccaaaatttgcagtattCCAGAAATGAAACCATCGTTACTGTTTTGT
TTTGCTGACTATTCTCAACTTTGAGCCCTGCTTCTCTCCGTatacacttt
tttctttataagaacaatttgattaAAACAATGAGGTTCAAGAATACCAA
AgcttaagaacaatttaagaacaatcttcGGCCTTGAATAGTTGGATTAT
TAGCAAATTaaggaaaagtaaaagaatacatgaaattaagaacagaataa
aaacaatttgaggctcaaaattcccaaaaataagaacaacagAGCCTCAT
TGAAAATttgctggttcttataaaaaaagagtgtcaATTAGATTGCTCAT
TCATTCTTCATTTTGCTTTCATTAGAAACTTTCTGGCCGACCACTGAACA
ATCATGGAGTGACCCCGTATGTGTTGATCCCCGAAGAGAAAGGTACGTTA
TAGTAAAgggaatttgtaaaatcgctcgacttttttagtcaaagcacttg
ttatacatttttggaaagataagggataggggaatcaaaataagataatt
tccaatttttctcgGTTTTTgagacaaatatgacggtctcaggcaaaaat
catagggtcaaaatttaatggaaattTTAGCTTTAGAAaagagagacctg
ttgtatatttttgaaaagctctcaaaaaattaagattagagatatattac
GAGTATGTATGATTTCTCTACCTAACTCAACAAATTTCTCCCTACTGTTA
GTAAAGCAAaataagacacccctgtctcacagcccccgTGTAACTTCTTC
CCGCACAGCAGGGATGAAATTTCTATCGTAATTCCAGTGGGAAACACACG
GGAAGAAAAATTGGTTTGAACAATTAATacacccttgtgtcacagaccct
gTTGGAATCcctacccactggaaaatttggctgaagtttcgtccccggtg
ggaagaataccctggaattttaaCCTCACTGGACAATTGACTATcctcat
ttgaaattcaatgaaaaaatgCATTCAAAAACTATCCCCACTGGACTCGA
GTGATTAagggcaagtctcaaaaacctaacagtttaccctaagtttttgC
GACCAATAACAGCCAGATTCAGAAatccacttagggctctaaagtacctc
tataccttGAAGTTTATGAATCACGCTATTTTTTACATAGGGAACAAAAG
AACTTTTAACCCAATGGGGATTTCGATGGAAATTGTCATCCCCATTGGGA
GAAAAAGAAAGAAGGTGTTCCCATCTTCCTGGGATGGGgctttttttggt
gattcctgacatgttcctgaacctctgtacaaaatttcatctctacacca
tttttgtcccGGTTTTGGCGGTTTATGACCTGATTCTACCTGACagcaaa
tttgttcgatttttcagtcattttgaatttattttatagaaatCGAAGTG
ACGAAAGGTCTGCTGTTGGCGCTTCTACCAACGCTTTCTGCAGAATGGAT
CGTTTCTATGAAGATACGTTTATTTAGGGGGCTGGACACGAGTTTTACAT
TTTGTAGATTATTCCATATGACGAAGGGTGGTCAAAATACTGTGTACGGT
GACAGGTATGATAAATCATTTTCCACGTTCtttataacgttagatgaatg
ttgaaacaacgttgtgtagcAGCTGGGCTCCATCCAAAACAAAGTAAACA
AGCTCTGATTCTGATTTGACCTTTGGTCAGCTTGAACATCTACTCTCGGA
TActctaattaattttttgaaaattttccaaccaggacatttttattcca
ccccctCCCTccctaggctacgtcatatcttcctttgtttcgagcgtaaa
acttcTACTCTAGAGTAATGCGTAAAAGActtaaaagcctggagctgtct
attgtgtagactagttTTGCGGTAGAAGTttgtttattcttttatttcca
TCGACAGGACCCCTTTAATATTAATCCGAGCGTCTGACAATGTTATCCAA
ACAAACACAGCAATGAACAACATAAAATCACGCAGCACATTGCTCACGAA
CAACCCTGTGCAAATCAACCAAACGTTATCCCTTGAAATACACCAAAGAT
ACATTCAAAACGGCAATCATCGCTATTTTATCATCATAAATGGAGTGGAA
GTACACAGCGAGGTGAATTATAGTGGACAACAGTTTCACGATATTAAGGT
TTATGCGACATCATCTGGCGGAAACACTGTTACAGCATGTCCTGCAATGC
TTAGTGATCTAAAACTTACTAATTTCCTTTGAAGtccgaagaagaaaatt
aataatGTATGTATGGAAGTGTCCAAAAAAAGAAtagtggaaaaaaatat
ttattctcaATATCTGTTGAGCTAGATTCTTGGGAATGTGTGTCTGTATG
CCCTTGTAACACCCCTGTTTCGATGTACCGATGAAGTTTTGAAATCCACC
GGGGTGGTTATGAAAAAGGTGAAATTTCAtttacaatcagtgccataaca
tattggcacttttggctagtttaccatttttcgaaaattgaagtttgagc
gagaatgtcaatttcgggccttcaacttgatttcaaggattatttcgatc
tgggagggacttattggtttctaggctatatttcaagccctactggacca
tttttgagcttttggatcctcagatcatAAGGTCCTAAgacttaagtcta
gcgttaaaactcagggttaaaactctaccctttgaacctactttagagca
cttgcaaatcgattgtggttcacaccccggtggatttctttttttgtgcc
aagtatttcgtcTGAAATTTCTAGcaccaaaaaataatttttattttctt
cttcacctaccttatcggccctttttacacgcTGGCCCtcattggcgtta
tttttgcgTAATAAGGGTTGGTGTTAaaaaagggccggtgtaaaaaaggc
caagattttgcaattttaacctaaaagcggcgttaattttttatcattat
ttcttaatttaaagaattttagatATGATTCGAAgatgaaaattatccat
tgtttcattccatatttaaaactttagtgaaatatttgatatatttaaaa
atcagtgattttcaatggaattttca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009724TCONS_00009724Clytia hemisphaericatranscript
TCONS_00009725TCONS_00009725Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:583342..592617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.49	0.77	0.5	0.76	1.27	0.6	0.85	1.07	1.16	1.25	0.6	0.83	0.42	0.35	0.5	0.44	2.79	2.77	0.93	1.14	7.69	7.17	1.76	3.68	2.85	4.43	0.45	0.94	0.8	0.78