TCONS_00009725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009725
Unique NameTCONS_00009725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009725 ID=TCONS_00009725|Name=TCONS_00009725|organism=Clytia hemisphaerica|type=transcript|length=1650bp
AGTAATTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGA
GGAAAAtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTT
TGCTTTGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACT
TAATGGACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACA
TTCATAAcgattttttcattaaatttcagCCATATTTTCACCTGTACGAA
ACTTTCTGGCCGACCACTGAACAATCATGGAGTGACCCCGTATGTGTTGA
TCCCCGAAGAGAAAGaaatCGAAGTGACGAAAGGTCTGCTGTTGGCGCTT
CTACCAACGCTTTCTGCAGAATGGATCGTTTCTATGAAGATACGTTTATT
TAGGGGGCTGGACACGAGTTTTACATTTTGTAGATTATTCCATATGACGA
AGGGTGGTCAAAATACTGTGTACGGTGACAGGACCCCTTTAATATTAATC
CGAGCGTCTGACAATGTTATCCAAACAAACACAGCAATGAACAACATAAA
ATCACGCAGCACATTGCTCACGAACAACCCTGTGCAAATCAACCAAACGT
TATCCCTTGAAATACACCAAAGATACATTCAAAACGGCAATCATCGCTAT
TTTATCATCATAAATGGAGTGGAAGTACACAGCGAGGTGAATTATAGTGG
ACAACAGTTTCACGATATTAAGGTTTATGCGACATCATCTGGCGGAAACA
CTGTTACAGCATGTCCTGCAATGCTTAGTGATCTAAAACTTACTAATTTC
CTTTGAAGtccgaagaagaaaattaataatGTATGTATGGAAGTGTCCAA
AAAAAGAAtagtggaaaaaaatatttattctcaATATCTGTTGAGCTAGA
TTCTTGGGAATGTGTGTCTGTATGCCCTTGTAACACCCCTGTTTCGATGT
ACCGATGAAGTTTTGAAATCCACCGGGGTGGTTATGAAAAAGGTGAAATT
TCAtttacaatcagtgccataacatattggcacttttggctagtttacca
tttttcgaaaattgaagtttgagcgagaatgtcaatttcgggccttcaac
ttgatttcaaggattatttcgatctgggagggacttattggtttctaggc
tatatttcaagccctactggaccatttttgagcttttggatcctcagatc
atAAGGTCCTAAgacttaagtctagcgttaaaactcagggttaaaactct
accctttgaacctactttagagcacttgcaaatcgattgtggttcacacc
ccggtggatttctttttttgtgccaagtatttcgtcTGAAATTTCTAGca
ccaaaaaataatttttattttcttcttcacctaccttatcggcccttttt
acacgcTGGCCCtcattggcgttatttttgcgTAATAAGGGTTGGTGTTA
aaaaagggccggtgtaaaaaaggccaagattttgcaattttaacctaaaa
gcggcgttaattttttatcattatttcttaatttaaagaattttagatAT
GATTCGAAgatgaaaattatccattgtttcattccatatttaaaacttta
gtgaaatatttgatatatttaaaaatcagtgattttcaatggaattttca
Run BLAST on NCBI

transcript from alignment at sc0000098:588437..592617+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009725 ID=TCONS_00009725|Name=TCONS_00009725|organism=Clytia hemisphaerica|type=transcript|length=4181bp|location=Sequence derived from alignment at sc0000098:588437..592617+ (Clytia hemisphaerica)
AGTAATTCTATGTTATTGTAATCAAGCTGAGAGAATCTTATTTATAAAGA
GGAAAAtctcttcaaatttttcaatttggtTTTTGGTATTTCAACCTTTT
TGCTTTGGTTATTCAAACGTCGGCTCAAAAAACGGGTGATTTATTCGACT
TAATGGACAAGCTTTTTTAACACACGAAAAAAATGAGGAACATTTTAACA
TTCATAAcgattttttcattaaatttcagCCATATTTTCACCTGTACGgt
aaatattttaagattttttttgagattatttGAATATTTCAGTAGAATTT
AGAAAACTGATACCTTATTACACGGATAAtacaacggccttgaaattaac
acgcaaaaaatcaacacgaattttatttgctttttcaaggacaccacggc
tggttttaattaagggggtttttattaacacgaaatttttcaattcgtgt
taataaaatgactagtaatattcatgtaataagATATAcgattttttaca
tatttttttctacaagcataacgtttataagcatatacaggCTCAGTGTC
TGGTACCTACataatggctctattgtttaagagCAATGGAATggtaagca
taatgcgagcgaGGGGTAGACACTTTCTTAACAATTTCttattatcttta
tttttttgccaaaaaattccAATACGcttgaattaaaattttaagGACCA
AATTAttccaaaaagattttctttcaaaCTTTCTTGTCAGTTGTTACCTA
AAAACAGGCTCAGTTAGGAAGCTATATTTTGGAATCAAACTCAAACTATG
CTTGTTATAAGcttattttctgaaaagaatTGGTTCattaaaatggaaaa
gaaaaatgaacctTCCCAAGTAAATCCAGAACAATGACCAATGACTAAAG
CTCActgatatgtttttttttttcatccaagCCGGGAATTCACTAAGCCT
TTAAAcatttatgcttataaaaaaacattttttaacaagaaaattttgtt
ttgatgatgtaAAAAGTCTTGTTTGAAATCTTTTAATATTCTACTCAAtc
attttcttccaaaatttgcagtattCCAGAAATGAAACCATCGTTACTGT
TTTGTTTTGCTGACTATTCTCAACTTTGAGCCCTGCTTCTCTCCGTatac
acttttttctttataagaacaatttgattaAAACAATGAGGTTCAAGAAT
ACCAAAgcttaagaacaatttaagaacaatcttcGGCCTTGAATAGTTGG
ATTATTAGCAAATTaaggaaaagtaaaagaatacatgaaattaagaacag
aataaaaacaatttgaggctcaaaattcccaaaaataagaacaacagAGC
CTCATTGAAAATttgctggttcttataaaaaaagagtgtcaATTAGATTG
CTCATTCATTCTTCATTTTGCTTTCATTAGAAACTTTCTGGCCGACCACT
GAACAATCATGGAGTGACCCCGTATGTGTTGATCCCCGAAGAGAAAGGTA
CGTTATAGTAAAgggaatttgtaaaatcgctcgacttttttagtcaaagc
acttgttatacatttttggaaagataagggataggggaatcaaaataaga
taatttccaatttttctcgGTTTTTgagacaaatatgacggtctcaggca
aaaatcatagggtcaaaatttaatggaaattTTAGCTTTAGAAaagagag
acctgttgtatatttttgaaaagctctcaaaaaattaagattagagatat
attacGAGTATGTATGATTTCTCTACCTAACTCAACAAATTTCTCCCTAC
TGTTAGTAAAGCAAaataagacacccctgtctcacagcccccgTGTAACT
TCTTCCCGCACAGCAGGGATGAAATTTCTATCGTAATTCCAGTGGGAAAC
ACACGGGAAGAAAAATTGGTTTGAACAATTAATacacccttgtgtcacag
accctgTTGGAATCcctacccactggaaaatttggctgaagtttcgtccc
cggtgggaagaataccctggaattttaaCCTCACTGGACAATTGACTATc
ctcatttgaaattcaatgaaaaaatgCATTCAAAAACTATCCCCACTGGA
CTCGAGTGATTAagggcaagtctcaaaaacctaacagtttaccctaagtt
tttgCGACCAATAACAGCCAGATTCAGAAatccacttagggctctaaagt
acctctataccttGAAGTTTATGAATCACGCTATTTTTTACATAGGGAAC
AAAAGAACTTTTAACCCAATGGGGATTTCGATGGAAATTGTCATCCCCAT
TGGGAGAAAAAGAAAGAAGGTGTTCCCATCTTCCTGGGATGGGgcttttt
ttggtgattcctgacatgttcctgaacctctgtacaaaatttcatctcta
caccatttttgtcccGGTTTTGGCGGTTTATGACCTGATTCTACCTGACa
gcaaatttgttcgatttttcagtcattttgaatttattttatagaaatCG
AAGTGACGAAAGGTCTGCTGTTGGCGCTTCTACCAACGCTTTCTGCAGAA
TGGATCGTTTCTATGAAGATACGTTTATTTAGGGGGCTGGACACGAGTTT
TACATTTTGTAGATTATTCCATATGACGAAGGGTGGTCAAAATACTGTGT
ACGGTGACAGGTATGATAAATCATTTTCCACGTTCtttataacgttagat
gaatgttgaaacaacgttgtgtagcAGCTGGGCTCCATCCAAAACAAAGT
AAACAAGCTCTGATTCTGATTTGACCTTTGGTCAGCTTGAACATCTACTC
TCGGATActctaattaattttttgaaaattttccaaccaggacattttta
ttccaccccctCCCTccctaggctacgtcatatcttcctttgtttcgagc
gtaaaacttcTACTCTAGAGTAATGCGTAAAAGActtaaaagcctggagc
tgtctattgtgtagactagttTTGCGGTAGAAGTttgtttattcttttat
ttccaTCGACAGGACCCCTTTAATATTAATCCGAGCGTCTGACAATGTTA
TCCAAACAAACACAGCAATGAACAACATAAAATCACGCAGCACATTGCTC
ACGAACAACCCTGTGCAAATCAACCAAACGTTATCCCTTGAAATACACCA
AAGATACATTCAAAACGGCAATCATCGCTATTTTATCATCATAAATGGAG
TGGAAGTACACAGCGAGGTGAATTATAGTGGACAACAGTTTCACGATATT
AAGGTTTATGCGACATCATCTGGCGGAAACACTGTTACAGCATGTCCTGC
AATGCTTAGTGATCTAAAACTTACTAATTTCCTTTGAAGtccgaagaaga
aaattaataatGTATGTATGGAAGTGTCCAAAAAAAGAAtagtggaaaaa
aatatttattctcaATATCTGTTGAGCTAGATTCTTGGGAATGTGTGTCT
GTATGCCCTTGTAACACCCCTGTTTCGATGTACCGATGAAGTTTTGAAAT
CCACCGGGGTGGTTATGAAAAAGGTGAAATTTCAtttacaatcagtgcca
taacatattggcacttttggctagtttaccatttttcgaaaattgaagtt
tgagcgagaatgtcaatttcgggccttcaacttgatttcaaggattattt
cgatctgggagggacttattggtttctaggctatatttcaagccctactg
gaccatttttgagcttttggatcctcagatcatAAGGTCCTAAgacttaa
gtctagcgttaaaactcagggttaaaactctaccctttgaacctacttta
gagcacttgcaaatcgattgtggttcacaccccggtggatttcttttttt
gtgccaagtatttcgtcTGAAATTTCTAGcaccaaaaaataatttttatt
ttcttcttcacctaccttatcggccctttttacacgcTGGCCCtcattgg
cgttatttttgcgTAATAAGGGTTGGTGTTAaaaaagggccggtgtaaaa
aaggccaagattttgcaattttaacctaaaagcggcgttaattttttatc
attatttcttaatttaaagaattttagatATGATTCGAAgatgaaaatta
tccattgtttcattccatatttaaaactttagtgaaatatttgatatatt
taaaaatcagtgattttcaatggaattttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005437XLOC_005437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009725-exon-sc0000098-1491911889:588437..588684TCONS_00009725-exon-sc0000098-1491911889:588437..588684Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1510915933:588437..588684TCONS_00009725-exon-sc0000098-1510915933:588437..588684Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1575043694:588437..588684TCONS_00009725-exon-sc0000098-1575043694:588437..588684Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1491911889:589867..589933TCONS_00009725-exon-sc0000098-1491911889:589867..589933Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1510915933:589867..589933TCONS_00009725-exon-sc0000098-1510915933:589867..589933Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1575043694:589867..589933TCONS_00009725-exon-sc0000098-1575043694:589867..589933Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1491911889:590931..591096TCONS_00009725-exon-sc0000098-1491911889:590931..591096Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1510915933:590931..591096TCONS_00009725-exon-sc0000098-1510915933:590931..591096Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1575043694:590931..591096TCONS_00009725-exon-sc0000098-1575043694:590931..591096Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1491911889:591449..592617TCONS_00009725-exon-sc0000098-1491911889:591449..592617Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1510915933:591449..592617TCONS_00009725-exon-sc0000098-1510915933:591449..592617Clytia hemisphaericaexon
TCONS_00009725-exon-sc0000098-1575043694:591449..592617TCONS_00009725-exon-sc0000098-1575043694:591449..592617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:588437..592617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.489578	0.408384	0.498157	0.762238	0.469056	0.370654	0	0.418643	0.430816	1.25137	0.352389	0.540509	0.308433	0	0.112387	0.423905	2.17368	1.54737	0.618199	0.420379	6.10612	6.07902	0.970073	2.62085	2.61408	4.33264	0.158977	0.389459	0.0837935	0.393328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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