TCONS_00009688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009688
Unique NameTCONS_00009688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1009

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009688 ID=TCONS_00009688|Name=TCONS_00009688|organism=Clytia hemisphaerica|type=transcript|length=1009bp
TCCCACTGGATGGTGGTTACAGATACATTGAATTGAAAGTATCCATTGGC
GAAATGGGAGAAATTTATGAGGATGGAAGGCAACAGGTGTATATTATCGA
TGCAGCAAAGTTGATTGGCCCTTTACATCCTCAAGAACTTCAAGAACTTA
TTCTTCTGAAGTATAAACAGAGTATCGAAGGTGCAGAAGAAGCAGCCAAA
TATTGCACGCCCAATTTACACCGAGCAAAATCACTCGCTCGTACTGCAAA
GAAGCCTGCAGTTTTAAGTCCGATCGTGGAGAATAACACTCCTCCTTCAA
CGTCGGTCACTATCACCAAGATCCAGTCAGCATCAAAGAAGAGACCAGCA
TCTCCATTGATCTCCAGTGGAACCATCATCAGTGCTGGTGATACTTCAAT
AGAGATCACTTGTATTAAATCACCGCCGAAACCCGCCGCTGTCTCTAAAA
CAAAACCCAACTCAACGACAGTCAGTACGGCTGCTGCTAAAACAACGACA
AGTCAGAAACCTTTGACGACGAAATCCACAACTACTACAACTACCACAAC
AactaaaaagacacaaaaagaaCCTTCTACACACAAAGAAAACAAACCAA
TTTCATCCGAGAAACCAGTGTCAAGTAAAACTACTAAGACGTCAAAAATC
GTCCAAAAACTTTACTCACCTAGAAGCTACTCATCTGTTCGTCGCTGTTC
GCCCAACATGAACGCCACCGTTCAGCGGACATACTCGATCGGCCGCTCAG
CGCCGCCACCGCCCCCATCACACTATGGCGGTTATTTTCAGCAACCACAA
GCGCCCATGCACGAGGGCGGTTATAATTTCAACAACAATTACAATGGGGC
AAATAATTGGAACAATAACATTAATCGGAATCATTTCTATAACCGTTTCG
GGTTTGGTTTGTATTGATGCTAAACCATTCAGTAAAAGGttctgtttttc
ttcttcttttgttattactttgttcaaatttcttttgcttactctcgggt
acctaatag
Run BLAST on NCBI

transcript from alignment at sc0000098:42175..47974+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009688 ID=TCONS_00009688|Name=TCONS_00009688|organism=Clytia hemisphaerica|type=transcript|length=5800bp|location=Sequence derived from alignment at sc0000098:42175..47974+ (Clytia hemisphaerica)
TCCCACTGGATGGTGGTTACAGATACATTGAATTGAAAGTATCCATTGGC
GAAATGGGAGAAATTTATGAGGATGGAAGGCAACAGGTACATAAAGCTGA
ATAACATAAATTTCTAACTATTTTCTATTCGCAACGACTGCAGCGAAATT
ACGTACATTTTCTGGTGTTTTTTTACCCAATACGTCGCTTGTATCCAATC
AGCTCTTGTAAAAGTGATCTGATGTCAGGAGTAAAAGTGAATTTATATCT
TGAACCACAGGGCCTTTGTTACAAGGAACCCTAGGTAGTAAGTGCATATT
AAAACAAAGTGTCTTTAACTTGATTTACATATCATTTGTAAATTGCACGA
GTTAAACCGAGTTCTTAACCATTAGGAACAATTTTCATGTATTATTACCC
TTTGCCCCACCAAGACGGTAAGAAAAACATACTACTACTCATTAGAATTc
cctgttgttgttttttgacaGGTGTATATTATCGATGCAGCAAAGTTGAT
TGGCCCTTTACATCCTCAAGAACTTCAAGAACTTATTCTTCTGAAGTATA
AACAGGTATAACCTTGACACTGTGATGACTGGTCATCGCTTCTAGTAAAT
GACCAGTTATCACCATATCCATTACGTATTATTTTTTACGGAAACGCCCC
GGTTTTTTCTAGTAGtatcaaattttaaacaatttctcTCTAGTTTAAAT
TTACCACTACTGGCAGAAACCAAGGTGTTTACGTCATAGGCTGCTTTGTC
CACTTGTGTTTAAAGAAAAGATTGATCATCCACAAGATTGATAGATTCTA
TGCAGTGGATTCTCGCTTATTCGAAATTCTATTATTCGAGTCAATTCTCG
GTTCCCGTCAAGGGGGAACCCTCATGAAATACTCCCTCCAGCCCGAATCT
TTCTGTTATTTGAAATGATTGAACTTTTTGTTCCacttcgaattagcgag
agttaacTTTTAAACAGTCTTTTGATTTTTGTCGTTCGATCAAATGACAA
CTGGTTCAAATATCAATAAACTGCCTGAATGGAACATGGCAAAAGCGGGG
CGTGGATTCGGGAACCGCTGGAGTGTAGTGTGGACTGAAACTTTAAACCA
CTCGGCCATAGCTCCTCATTCTATGTTTTCTTCTTGTTTCACAGAGTATC
GAAGGTGCAGAAGAAGCAGCCAAATATTGCACGCCCAATTTACACCGAGC
AAAATCACTCGCTCGTACTGCAAAGGTATAATAATGTACTTCAAAGCTTA
GTTAAATGCATCTAGAAGTTTGTAATTCTACCCCTCCACCCACCTTAATA
AGAGAGCTAATTTTGTTGAACAACAATAAtgcttaaaaaattattttagt
gaGAGCGACCtaattttctttctattttctAAAGGGGGTTTCAACGTTGG
CGAAGGAGTGAAATCGGCTCTTTTCGAACGGAGGGGCTGGATTCGACGGA
ATTtaggaaattgggttctctgtcGAAAACGGAAAATTAACACAATTTTA
TTGTGGAATTTTCAGTGGCCTAATTTTGGTTCGGTCGGTTTGACggaaat
cggggaaaaaattggaGGAATTGTGGAATCAGGTACCTCCTGAAACCTCC
CCTTATAATCTTGGCTAGAACTTTTTTCGATGGCAGGGTAGGTCGGTACT
TTTTAGCCTAGCGTCAGAGGTAAAACTTTGTGCttaaaaatattatgaaa
aagGTATCAAATAACATCctttatctttttttctagAAGCCTGCAGTTTT
AAGTCCGATCGTGGAGAATAACACTCCTCCTTCAACGTCGGTCACTATCA
CCAAGATCCAGTCAGCATCAAAGAAGAGACCAGCATCTCCATTGATCTCC
AGTGGAACCATCATCAGTGCTGGTGATACTTCAATAGAGGTACATTTAGA
TTCGTCAtatgtaccttatcggcccttcttacgccggcccttattggtgt
TATTCTTTGGCTCTTGGCGTAATAAGTGCCGGTGTAAAAACAGCTGCGAT
AAGGTAATAGGAATTTCTCGCTATTCCCCGACTGAGTTGATTCGTTTTTC
AggaacttttaaacttttatacTATTATACTAAAGTCTTTCTCGGTGtat
tctttttaaatttcaatctgCAATTtctaatcgttttttttttctttatt
ctatATAATATCCCACTCcttattatcttttcaacatgCGCAAAACGGcc
atttcattcaaattttatcaaaacttacagcctttttgtctccgctgcag
attatattgagacagaatTTAGACCTTTTGACTCTGTTTGACTAAAGGAA
GAAATCTTGACGGGAAGAAAATTAGgtggatttggcggatttggttaaaa
tctgccaaattaagttcccgccaaatttaagttgctctatttattccccc
aaatgtgtgctatttcaggctttaaaacaggtttttggacctacctccgg
gtgccccggtggaggtcctatgaattaacctctgtctgttcgtccgtccg
tccgttcgtctgttaccagcttttctcgactcgagattggctcattagtt
ttttctgattttttgcacaaagatgcaaaatggcaatggccaaaatgtga
cggagcccgattttcgaaaaaaaatcgtttccggccgaaaatgccggaaa
tatgccggaaaaaccggctttttggcattttctcaagatttcatcattag
ttttttcagattttttgcacaaagatgcgtattagcaatgcccaaaactt
ggccgagtccgatttttgagaaaaaaccttttccggtcgaatatgccgga
aatatgccggaaatcgccgtttttgcagattttcatcggactttttcctt
atatttctttgttttttcacacaaaaacatgattaatagcaatgtccacg
atcaagcatgattcaattgtcaataaaactgatttttgaagccggaactt
tctataaatcgccggaacagacgattttcttgagctgtactttatatttt
ttcatgaaattttgcacactgaagcaaaatgtcaatacctaaattgtgac
gaagcccgactttcgaaaaaaattcatttccggccgaaaatgccggaaat
atgccggaaaaactggttttttggcattttctcgagattttatcattagt
tttttctaattttttgctcaaagatgcgtattaacaatgtacaaaacatg
gccgagtccgatttttgagaaaaaaaattttccggcggaaaatgcctgaa
atatgccggaattcgccgtttttctagattttcattgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcaataaaattga
tttttgaagccggaactattttaaaagtcgccggaacaacctattttcgc
cggaaagacagtatttcttgaatttctcgagctgtactttaatcaaaaat
atatttcaaaaccaaaatatttaaaaatccataactcggagtttcatgct
ctaagcaatcatcagatgtaactaaaaaattaaaaagctgtgtGAAAACA
TATGTTACAAAGTTGGTAAAATGCTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTATTT
agtttttccctacaacccttccctctccccctaccatcaatcaatgatga
atttcttgcgttatgcattttcgctaaacgctatgttttctgacttattt
tttttcatttttctccttgcattactatctaactttcatcatcaggtagg
tccattcagcatctagcttgttccttttttaatggcgttttttggacaaa
aatgtccttcgtccgccaaattaaattcccgccaaattaaattcccgcca
aatttaagttttcaagttaagcgccaaattaagttccctatgtaaaaact
ttttcggccatccgccaaattaaattcccaccaaaatttcttcctttaat
gtacttCTTTAGTAGTTCCTTGAAGGAAATGCCTAAATGATTAATAAAAA
ACCGGCCTGCCCAAAGACAGTTGAGAAACACTCAGAAACCCTtcaatttc
caacaaaaaataGAAAGGTTGAAGAGTTGCTACTATTCTTATTATACGGA
CCATGAAAATGTCAACGTAAATAAATAATCTTACTCGAAATTTAGATCAC
TTGTATTAAATCACCGCCGAAACCCGCCGCTGTCTCTAAAACAAAACCCA
ACTCAACGACAGTCAGTACGGCTGCTGCTAAAACAACGACAAGTCAGAAA
CCTTTGACGACGAAATCCACAACTACTACAACTACCACAACAactaaaaa
gacacaaaaagaaCCTTCTACACACAAAGAAAACAAACCAATTTCATCCG
AGAAACCAGTGTCAAGTAAAACTACTAAGACGTCAAAAATCGTCCAAAAA
CTTTACTCACCTAGAAGCTACTCATCTGTTCGTCGCTGTTCGCCCAACAT
GAACGCCACCGTTCAGCGGACATACTCGATCGGCCGCTCAGCGCCGCCAC
CGCCCCCATCACACTATGGCGGTTATTTTCAGCAACCACAAGCGCCCATG
CACGAGGGCGGTTATAATTTCAACAACAATTACAATGGGGCAAATAATTG
GAACAATAACATTAATCGGAATCATTTCTATAACCGTTTCGGGTTTGGTT
TGTATTGATGCTAAACCATTCAGTAAAAGGttctgtttttcttcttcttt
tgttattactttgttcaaatttcttttgcttactctcgggtacctaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005418XLOC_005418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009688-exon-sc0000098-1491911889:42175..42260TCONS_00009688-exon-sc0000098-1491911889:42175..42260Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1510915933:42175..42260TCONS_00009688-exon-sc0000098-1510915933:42175..42260Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1575043694:42175..42260TCONS_00009688-exon-sc0000098-1575043694:42175..42260Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1491911889:42646..42729TCONS_00009688-exon-sc0000098-1491911889:42646..42729Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1510915933:42646..42729TCONS_00009688-exon-sc0000098-1510915933:42646..42729Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1575043694:42646..42729TCONS_00009688-exon-sc0000098-1575043694:42646..42729Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1491911889:43319..43399TCONS_00009688-exon-sc0000098-1491911889:43319..43399Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1510915933:43319..43399TCONS_00009688-exon-sc0000098-1510915933:43319..43399Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1575043694:43319..43399TCONS_00009688-exon-sc0000098-1575043694:43319..43399Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1491911889:43911..44063TCONS_00009688-exon-sc0000098-1491911889:43911..44063Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1510915933:43911..44063TCONS_00009688-exon-sc0000098-1510915933:43911..44063Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1575043694:43911..44063TCONS_00009688-exon-sc0000098-1575043694:43911..44063Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1491911889:47370..47974TCONS_00009688-exon-sc0000098-1491911889:47370..47974Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1510915933:47370..47974TCONS_00009688-exon-sc0000098-1510915933:47370..47974Clytia hemisphaericaexon
TCONS_00009688-exon-sc0000098-1575043694:47370..47974TCONS_00009688-exon-sc0000098-1575043694:47370..47974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:42175..47974 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07904	1.42929	0	1.75075	1.76003	1.52794	1.95062	3.2543	0	0	0.779728	1.27561	0.306886	3.42975	3.42378e-07	0.0260756	0.731565	0.422859	0.877797	0.238536	1.24846	0.626628	0.00437809	6.03862e-05	8.04366	4.05575	0.0985179	0.372951	0.027465	1.43084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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