XLOC_005418 (gene) - C. hemisphaerica

Overview
NameXLOC_005418
Unique NameXLOC_005418
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000098:38681..47974+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005418 ID=XLOC_005418|Name=XLOC_005418|organism=Clytia hemisphaerica|type=gene|length=9294bp|location=Sequence derived from alignment at sc0000098:38681..47974+ (Clytia hemisphaerica)
CAAAAAGCAGAATCAATCATAACCTGAATGTATTTTACACTCATGCTAAT
ACATTTTTCATAAataggaaaaaaattaaagcatgCCTCAACTAATGCGG
AGATTTTCAAAGATTGAAAGTAAAGCTGGAAGGGAAACAATTTTCATTGA
AACAATTGAATTTGCAAAAGGAGCTTTTCAGGAGGTAAGTTATTACTAAA
GAAATATAACTAGTGTGTCACCGGAATGTAATCACTTTGTGATCAGGGGG
GGGTCTTGCacttactccttgacactatgtggagtaactgcaattttgga
cattttctacagacaccaccacccttgcagttattccatagtgtactaac
tgattttaccctcaaaattggtgtataccacccccaaaaatgccaaattt
ggcaattttttcactgaattcctcagttttgataccattttactgggtac
gtcttattaacgaccgttcaagagttaaatatctcaatcattttccaagt
ttgttaaaatatctttcatgccttgattgaagNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgaaaaaaatgttttgaatttttttgcttccgg
aatttttaaaaacctaaaattttaagtgaaaaattgaaaaatgtgctcac
ttagtacaccatatcctattaaaatcgacaattttgggcttaggcaccac
ccatgttgcagttagtccactggtggagtaactgttttcccaaattttgg
tttatataccaccacggtagtaattgtcatagtgtttatataataactgc
atgacccccccctgttgtgattttaaattctcaaatatatattttttatt
tcaaataatcGTACACAGCTGAATTAAGAAAAATTACCAATCTAAACTTA
GTTTTTATTCAGGTTGGGTCAAAAACAGGTTGGCATAGGTCGCTGCACTC
CAGGGTCCACAACTATTGGTATATgaccaaaatcaatttatttCATATGA
TGCCAGTAGATATCTTGGAATTATGATATTTTTGTGTTTCGAACAACATA
TTTTCGAACAGCATCTTGTCATAACGGTCAAATTTCAACTCCTCTTTTGA
TAGGAAGTTCGTCTTTGGTCTAATGGATTATTGAATTCACATGGAGGTGT
TATCTATTTTGGTGTTAATTCATCAGGTAGGTACAGGGATTTTTGTTCCC
CACAGAGAAATAATTTTTCCCAgaacttttttcatttaaaCCTCTGTTTA
TTGGTTGTGTTAAGTACTGTTTTCATTAAATTCTCCTCTGGGTGGCTCCT
AGGAAAAGAGAATATTTTGTACGCACGAGCagtactaaaatttgagggga
aatCACTTGAGGTGCcccaaaatgtcaaaattttcgAATTATGGCATACT
TATCACCTGGCAAACCTGGTACATATTTATTCCTGTAATAGATAATTGAT
AATAGTATTACTGCTTAGGTAATATTGTGGATGATCCAATTGATGGTATT
CATCATATGTTTGTATTCAACTTATATTTATATAGGACTAtagttttctt
tcattttcaggcATCATCAAAGGAAAACTGATCTCTAGAAAAGAGGAAGA
TGATCTCAGACTCGCTGTGGATCGCACATTTGGTCATTTTCAACCCTTTG
TATCAAGTCAACATTATAGGTAAATACGTCTCAAACTTTTAGAAAAGTCT
AAAAAGCTTGCGTCCATCTGCTCATAATTATACTTCCAACGAGGTGTTGC
TGTACCATTTCCCTTTCAAGAGGAATGTTTAAAAAAGTACATTGTGTCCC
CCATCTATTCCCGGAGCCCAAAACCCCCATTTGAGGGGGAGAACCTCCTA
TCCTTTTCCCCTCAATCCCCCCACCACTTGGAATTATTGTCATGAAAAAT
CAATTCACTGCATTTTCTATTATGATAATTAAATACCGATTCCCTGCAGC
CGATCataaagaattagaaacatcTGATAATACACCTTATTTTTGcactt
ttctaattttctaaaatCTCCTATTTGGCTTAAGTCCATCATTAAGATGA
AAATATTCAATCCCCCCTACTAAACAAAAGTTGATCCCTTTTTGCCTGGA
GTTTGAGGATCGCATGAAGAAGTATCTTAGTTCAGTTTAGTTTTTAGGTT
CGAATTATTGTTGTTTTTACATTGGATTTGATAAGATTTACTTTATTCTT
CTTCTCTATTCTTCAGACTTTCGTTTGTCCCACTGGATGGTGGTTACAGA
TACATTGAATTGAAAGTATCCATTGGCGAAATGGGAGAAATTTATGAGGA
TGGAAGGCAACAGGTACATAAAGCTGAATAACATAAATTTCTAACTATTT
TCTATTCGCAACGACTGCAGCGAAATTACGTACATTTTCTGGTGTTTTTT
TACCCAATACGTCGCTTGTATCCAATCAGCTCTTGTAAAAGTGATCTGAT
GTCAGGAGTAAAAGTGAATTTATATCTTGAACCACAGGGCCTTTGTTACA
AGGAACCCTAGGTAGTAAGTGCATATTAAAACAAAGTGTCTTTAACTTGA
TTTACATATCATTTGTAAATTGCACGAGTTAAACCGAGTTCTTAACCATT
AGGAACAATTTTCATGTATTATTACCCTTTGCCCCACCAAGACGGTAAGA
AAAACATACTACTACTCATTAGAATTccctgttgttgttttttgacaGGT
GTATATTATCGATGCAGCAAAGTTGATTGGCCCTTTACATCCTCAAGAAC
TTCAAGAACTTATTCTTCTGAAGTATAAACAGGTATAACCTTGACACTGT
GATGACTGGTCATCGCTTCTAGTAAATGACCAGTTATCACCATATCCATT
ACGTATTATTTTTTACGGAAACGCCCCGGTTTTTTCTAGTAGtatcaaat
tttaaacaatttctcTCTAGTTTAAATTTACCACTACTGGCAGAAACCAA
GGTGTTTACGTCATAGGCTGCTTTGTCCACTTGTGTTTAAAGAAAAGATT
GATCATCCACAAGATTGATAGATTCTATGCAGTGGATTCTCGCTTATTCG
AAATTCTATTATTCGAGTCAATTCTCGGTTCCCGTCAAGGGGGAACCCTC
ATGAAATACTCCCTCCAGCCCGAATCTTTCTGTTATTTGAAATGATTGAA
CTTTTTGTTCCacttcgaattagcgagagttaacTTTTAAACAGTCTTTT
GATTTTTGTCGTTCGNGTTACAGATACATTGAATTGAAAGTATCCATTGG
CGAAATGGGAGAAATTTATGAGGATGGAAGGCAACAGGTACATAAAGCTG
AATAACATTTCtaactattttctattcacgATATGCATCACTNGTCCCAC
TGGATGGTGGTTACAGATACATTGAATTGAAAGTATCCATTGGCGAAATG
GGAGAAATTTATGAGGATGGAAGGCAACAGGTACATAAAGCTGAATAACA
TAAATTTCTAACTATTTTCTATTCGCAACGACTGCAGCGAAATTACGTAC
ATTTTCTGGTGTTTTTTTACCCAATACGTCGCTTGTATCCAATCAGCTCT
TGTAAAAGTGATCTGATGTCAGGAGTAAAAGTGAATTTATATCTTGAACC
ACAGGGCCTTTGTTACAAGGAACCCTAGGTAGTAAGTGCATATTAAAACA
AAGTGTCTTTAACTTGATTTACATATCATTTGTAAATTGCACGAGTTAAA
CCGAGTTCTTAACCATTAGGAACAATTTTCATGTATTATTACCCTTTGCC
CCACCAAGACGGTAAGAAAAACATACTACTACTCATTAGAATTccctgtt
gttgttttttgacaGGTGTATATTATCGATGCAGCAAAGTTGATTGGCCC
TTTACATCCTCAAGAACTTCAAGAACTTATTCTTCTGAAGTATAAACAGG
TATAACCTTGACACTGTGATGACTGGTCATCGCTTCTAGTAAATGACCAG
TTATCACCATATCCATTACGTATTATTTTTTACGGAAACGCCCCGGTTTT
TTCTAGTAGtatcaaattttaaacaatttctcTCTAGTTTAAATTTACCA
CTACTGGCAGAAACCAAGGTGTTTACGTCATAGGCTGCTTTGTCCACTTG
TGTTTAAAGAAAAGATTGATCATCCACAAGATTGATAGATTCTATGCAGT
GGATTCTCGCTTATTCGAAATTCTATTATTCGAGTCAATTCTCGGTTCCC
GTCAAGGGGGAACCCTCATGAAATACTCCCTCCAGCCCGAATCTTTCTGT
TATTTGAAATGATTGAACTTTTTGTTCCacttcgaattagcgagagttaa
cTTTTAAACAGTCTTTTGATTTTTGTCGTTCGATCAAATGACAACTGGTT
CAAATATCAATAAACTGCCTGAATGGAACATGGCAAAAGCGGGGCGTGGA
TTCGGGAACCGCTGGAGTGTAGTGTGGACTGAAACTTTAAACCACTCGGC
CATAGCTCCTCATTCTATGTTTTCTTCTTGTTTCACAGAGTATCGAAGGT
GCAGAAGAAGCAGCCAAATATTGCACGCCCAATTTACACCGAGCAAAATC
ACTCGCTCGTACTGCAAAGGTATAATAATGTACTTCAAAGCTTAGTTAAA
TGCATCTAGAAGTTTGTAATTCTACCCCTCCACCCACCTTAATAAGAGAG
CTAATTTTGTTGAACAACAATAAtgcttaaaaaattattttagtgaGAGC
GACCtaattttctttctattttctAAAGGGGGTTTCAACGTTGGCGAAGG
AGTGAAATCGGCTCTTTTCGAACGGAGGGGCTGGATTCGACGGAATTtag
gaaattgggttctctgtcGAAAACGGAAAATTAACACAATTTTATTGTGG
AATTTTCAGTGGCCTAATTTTGGTTCGGTCGGTTTGACggaaatcgggga
aaaaattggaGGAATTGTGGAATCAGGTACCTCCTGAAACCTCCCCTTAT
AATCTTGGCTAGAACTTTTTTCGATGGCAGGGTAGGTCGGTACTTTTTAG
CCTAGCGTCAGAGGTAAAACTTTGTGCttaaaaatattatgaaaaagGTA
TCAAATAACATCctttatctttttttctagAAGCCTGCAGTTTTAAGTCC
GATCGTGGAGAATAACACTCCTCCTTCAACGTCGGTCACTATCACCAAGA
TCCAGTCAGCATCAAAGAAGAGACCAGCATCTCCATTGATCTCCAGTGGA
ACCATCATCAGTGCTGGTGATACTTCAATAGAGGTACATTTAGATTCGTC
AtatgtaccttatcggcccttcttacgccggcccttattggtgtTATTCT
TTGGCTCTTGGCGTAATAAGTGCCGGTGTAAAAACAGCTGCGATAAGGTA
ATAGGAATTTCTCGCTATTCCCCGACTGAGTTGATTCGTTTTTCAggaac
ttttaaacttttatacTATTATACTAAAGTCTTTCTCGGTGtattctttt
taaatttcaatctgCAATTtctaatcgttttttttttctttattctatAT
AATATCCCACTCcttattatcttttcaacatgCGCAAAACGGccatttca
ttcaaattttatcaaaacttacagcctttttgtctccgctgcagattata
ttgagacagaatTTAGACCTTTTGACTCTGTTTGACTAAAGGAAGAAATC
TTGACGGGAAGAAAATTAGgtggatttggcggatttggttaaaatctgcc
aaattaagttcccgccaaatttaagttgctctatttattcccccaaatgt
gtgctatttcaggctttaaaacaggtttttggacctacctccgggtgccc
cggtggaggtcctatgaattaacctctgtctgttcgtccgtccgtccgtt
cgtctgttaccagcttttctcgactcgagattggctcattagttttttct
gattttttgcacaaagatgcaaaatggcaatggccaaaatgtgacggagc
ccgattttcgaaaaaaaatcgtttccggccgaaaatgccggaaatatgcc
ggaaaaaccggctttttggcattttctcaagatttcatcattagtttttt
cagattttttgcacaaagatgcgtattagcaatgcccaaaacttggccga
gtccgatttttgagaaaaaaccttttccggtcgaatatgccggaaatatg
ccggaaatcgccgtttttgcagattttcatcggactttttccttatattt
ctttgttttttcacacaaaaacatgattaatagcaatgtccacgatcaag
catgattcaattgtcaataaaactgatttttgaagccggaactttctata
aatcgccggaacagacgattttcttgagctgtactttatattttttcatg
aaattttgcacactgaagcaaaatgtcaatacctaaattgtgacgaagcc
cgactttcgaaaaaaattcatttccggccgaaaatgccggaaatatgccg
gaaaaactggttttttggcattttctcgagattttatcattagttttttc
taattttttgctcaaagatgcgtattaacaatgtacaaaacatggccgag
tccgatttttgagaaaaaaaattttccggcggaaaatgcctgaaatatgc
cggaattcgccgtttttctagattttcattgNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcaataaaattgatttttg
aagccggaactattttaaaagtcgccggaacaacctattttcgccggaaa
gacagtatttcttgaatttctcgagctgtactttaatcaaaaatatattt
caaaaccaaaatatttaaaaatccataactcggagtttcatgctctaagc
aatcatcagatgtaactaaaaaattaaaaagctgtgtGAAAACATATGTT
ACAAAGTTGGTAAAATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTATTTagtttt
tccctacaacccttccctctccccctaccatcaatcaatgatgaatttct
tgcgttatgcattttcgctaaacgctatgttttctgacttattttttttc
atttttctccttgcattactatctaactttcatcatcaggtaggtccatt
cagcatctagcttgttccttttttaatggcgttttttggacaaaaatgtc
cttcgtccgccaaattaaattcccgccaaattaaattcccgccaaattta
agttttcaagttaagcgccaaattaagttccctatgtaaaaactttttcg
gccatccgccaaattaaattcccaccaaaatttcttcctttaatgtactt
CTTTAGTAGTTCCTTGAAGGAAATGCCTAAATGATTAATAAAAAACCGGC
CTGCCCAAAGACAGTTGAGAAACACTCAGAAACCCTtcaatttccaacaa
aaaataGAAAGGTTGAAGAGTTGCTACTATTCTTATTATACGGACCATGA
AAATGTCAACGTAAATAAATAATCTTACTCGAAATTTAGATCACTTGTAT
TAAATCACCGCCGAAACCCGCCGCTGTCTCTAAAACAAAACCCAACTCAA
CGACAGTCAGTACGGCTGCTGCTAAAACAACGACAAGTCAGAAACCTTTG
ACGACGAAATCCACAACTACTACAACTACCACAACAactaaaaagacaca
aaaagaaCCTTCTACACACAAAGAAAACAAACCAATTTCATCCGAGAAAC
CAGTGTCAAGTAAAACTACTAAGACGTCAAAAATCGTCCAAAAACTTTAC
TCACCTAGAAGCTACTCATCTGTTCGTCGCTGTTCGCCCAACATGAACGC
CACCGTTCAGCGGACATACTCGATCGGCCGCTCAGCGCCGCCACCGCCCC
CATCACACTATGGCGGTTATTTTCAGCAACCACAAGCGCCCATGCACGAG
GGCGGTTATAATTTCAACAACAATTACAATGGGGCAAATAATTGGAACAA
TAACATTAATCGGAATCATTTCTATAACCGTTTCGGGTTTGGTTTGTATT
GATGCTAAACCATTCAGTAAAAGGttctgtttttcttcttcttttgttat
tactttgttcaaatttcttttgcttactctcgggtacctaatag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009685TCONS_00009685Clytia hemisphaericatranscript
TCONS_00009686TCONS_00009686Clytia hemisphaericatranscript
TCONS_00009687TCONS_00009687Clytia hemisphaericatranscript
TCONS_00009688TCONS_00009688Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009687-proteinTCONS_00009687-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:38681..47974 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.84	22.01	14.58	13.02	20.03	16.87	15.62	16.28	10.07	13.8	6.69	6.73	6.43	8.39	6.79	7.68	12.78	10.27	2.31	2.86	4.89	5.71	12.8	12.46	31.28	32.55	1.95	1.69	9.61	11.33