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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009498 ID=TCONS_00009498|Name=TCONS_00009498|organism=Clytia hemisphaerica|type=transcript|length=1357bp
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACAAAAAATTGTTGACAAAATACC
ATCATCTGAAGaaacttttactgtcaaaaagTATAAAGAATTTCTCAAGG
AACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTTC
ATGAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAA
AATAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAG
ATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTT
AAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcct
cactgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAA
TGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATG
CCCATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGC
AATGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAG
GAAGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATC
AATAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAG
AGGAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGG
ACAGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGG
GATGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGaGGCCCTAAAAGA
GGTGAAACAAGACTATTTTTGTGGTGTGGATAATGCTATGGAACCACTGC
TGACCAGTAGTCACTCTATTGTGGACGGAAAAGTTAAATCCATTGGTCAC
TTGTTCGCTTCTTCAATTTGTAACCATGGCCCAGCACCAAACTTTTTAGC
ACCATGGTTGTTTGACTACATTGTTGGTGGAGTTGAGAAAATGTTCAAAG
TTCTACCTGTTGAATTGGATCGTGAATCCCAGTTAGGAGTTATGTATAGC
AAGAACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGAAA
GCTTAATGCAAGGATTGCAAGTTTTTCAGTTGCTCGAACCAATTCGTTCA
AATCCGGATGTTTTCGGAATTATATTTTGCCATTCAGATATACTGCCTTG
GTCGTATGAAATGTTCATTGAACGCTTACGTGTTGATTTTGCTGAAGACA
GATCGAATGTCAAACAGTTTCAGCTTTCGTGCTATCGTATCTTTCTCGAG
ATGTGCG Run BLAST on NCBI protein sequence of TCONS_00009498-protein >TCONS_00009498-protein ID=TCONS_00009498-protein|Name=TCONS_00009498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MSDNVPKTYLEKQEDKKIDDYFNSNAADKASDSDDENIENITIVPKRIEV
KDDVVVINADAEAKTNLTEKNYPCPTCRTLFSLMDIETHADECANNAPNM
PIIIDDEETFTSYNEEAMMEQMQTEPREETQGTGRVLQSEEVREIVQTTI
NSIEVKDNESINLIVFRGSCFKDFHNHFKKPWRDRIAAKLCIKFAGEVGR
DEGGGVSREFYTEALKEVKQDYFCGVDNAMEPLLTSSHSIVDGKVKSIGH
LFASSICNHGPAPNFLAPWLFDYIVGGVEKMFKVLPVELDRESQLGVMYS
KNHFAKEDGTIHTIH Run BLAST on NCBI transcript from alignment at sc0000095:651020..655726+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009498 ID=TCONS_00009498|Name=TCONS_00009498|organism=Clytia hemisphaerica|type=transcript|length=4707bp|location=Sequence derived from alignment at sc0000095:651020..655726+ (Clytia hemisphaerica)
TAAATAGCTATAGAGAAGCACTCATCTCTAGACCAATACTTCTGTGGAAG
TGATGACTACCTTCTTTTGTATCCTGACAAAAAATTGTTGACAAAATACC
ATCATCTGAAGaaacttttactgtcaaaaagTATAAAGAATTTCTCAAGG
AACCGTCGTATGAAAGGGTAAAACTATACTTATGCCTTGAGGTAGACTTC
ATGAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAA
AATAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAG
ATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTT
AAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcct
cactgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAA
TGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATG
CCCATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGC
AATGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAG
GAAGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATC
AATAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAG
AGGAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGG
ACAGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGG
GATGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGGTACATATGAGAA
TTTTAGTAGTAGTATTCTGGGTGGGTAGGTACTTATAGACCTTTCCAATA
ATGCTGCAGCCCTATTAAAAAGTTGACAAATATTGCTAAGGATCGCAGCC
AATGAGACATAGGCAAGTCGTTTCAGATTGGGATGGCTACCGTCAATCAG
GTTCAATTAGTTTCATAAAATGAGCTAGGTAACTTTCATCGATCACCAAT
TAGCAGTCTGGTCTGTGATTTGTACATTTTACAAGCTAGAATAACAACAA
GTTATGATATAACTTCTGGCCTTAATAAATTGGGGACCAGAAAATATTGT
GGTCTGGAGGTGATGAAAGTTACCCTGGCTTATTATAGTAATGCCGATTA
ATGGTACTCTCCTAGCAAAAGTTGGGGGGTtaacatccagataccagacc
catagccgggtggtggtgtccttttttcctttaaaagtttgaaaagttca
GTTGGTATTGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccccccc
ccgtttattaatttttaagaatattttcagctgtcaaagagaaggttcct
tattttgctcaaaaaagcctgGTTTAAGCCTAAATTAACCTCATTTTTGG
GTTTTTATTTGGGTTTATTTGGAAACTAAGAGTAATAATTCAACAGGGTG
TCTTCTCTAAACAATGATCATTTTTGTTCTTAGCTATTCtgttttatttc
attatttagaGGCCCTAAAAGAGGTGAAACAAGACTATTTTTGTGGTGTG
GATAATGCTATGGAACCACTGCTGACCAGTAGTCACTCTATTGTGGACGG
AAAAGTTAAATCCATTGGTCACTTGTTCGCTTCTTCAATTTGTAACCATG
GCCCAGCACCAAACTTTTTAGCACCATGGTTGTTTGACTACATTGTTGGT
GGAGTTGAGAAAATGTTCAAAGTTCTACCTGTTGAATTGGATCGTGAATC
CCAGTTAGGAGTTATGTATAGCAAGGTATTTATTTGATGCAGCTAATTAT
TAAAATTTCTGAAACTGTTTGACATCGATCCGTCTTCAGCAAAATCAACA
CGTAAGCATTCAATGAACATTTCATACGACCAAAGCTGTATATCTAAATG
GCAAAATATAATTCTGANATTCGATCCGTCTTCAGCAAAATCAACACGTA
AGCATTCAATGAACATTTCATACGACCAAAGCTGTATATCTAAATGGCAA
AATATAATTCTGAAAACATCCGGATTTGAACGTATTGGTTCAAGGAGGGG
GGTGAATGTTTTAACCTTGATGGGGGCTTTCAGGAAATTTTATAAGAAGT
TGGGGGGAGAAAGAGCAAAAACTAGGTATAATATTTCAATAGATGATTAA
AAATGTGTCTATATTTCATCCATTTGTGTGTTCACTGCaggaaattgtta
tttttgtttaagtTATTATTCAAAATATAGTGAATCGGTTGGACGCAAAT
ATTTTCTTCTAATGGGTGGGATCCCGGAAAAAGGGCAGGTGGGGGAGGAG
ACCAAATGGGGGTTTTGGGCCCCAGATGAGGGGACCTGAAAACCTGGAGG
ACACCATGACAATCtacttcaaacaatttttttgaaggGAATTCTGAGAA
TAGACTCAAATGCAAGTGAATATGCTATAATTTGAATTACTAATGGGTGG
TGGTTGGTGAATATTACATTGAAAGTTGGAGGGGGGGGttgcatcaaatt
ttgaaaggcaGTACCAGTAGGGGGGGGTTGCTCTAGACTAAGAGGGGTTA
GTGGCCCTTTCCAAACTATACCATAATAGGTTGACTGAGGTAATAGGTTG
ATTCGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTT
CGAACCGGTGTGAAACGGTGCAAAGATCGGTTTTTCGATAACCGGTTCAA
ATCGGGTGttatggaaatcgcttggcaggacacaAATTTCATTACTTGTG
TGTGTCATGAGATcttaattttctcaaaactagCCTTTGTGTCAGTTTGT
GTGCCTTTGTCAATATTTTAAACCCCTTTGGAATTTCACCCCGAttggtg
aaaattaaaaaagaaaaattcatctCAGATTGATTGGTTGGCTcagaaaa
agcaacaaaatggtagatatttaaatcatttgatttaaattgattatatt
gagacaaacTTGTTGGAAACTACTTTTAATTTGATTTATGTCTTCTCTTT
TAGAACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGAAA
GCTTAATGCAAGGATTGCAAGTTTTTCAGTTGCTCGAACCAATTCGTTCA
AATCCGGATGTTTTCGGAATTATATTTTGCCATTCAGATATACTGCCTTG
GTCGTATGAAATGTTCATTGAACGCTTACGTGTTGATTTTGCTGAAGACA
GATCGAATGTCAAACAGTTTCAGCTTTCGTGCTATCGTATCTTTCTCGAG
ATGTGCG Coding sequence (CDS) from alignment at sc0000095:651020..655726+ >TCONS_00009498 ID=TCONS_00009498|Name=TCONS_00009498|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000095:651020..655726+ (Clytia hemisphaerica)
ATGAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAA
AATAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAG
ATGATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTT
AAAGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcct
cactgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAA
TGGATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATG
CCCATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGC
AATGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAG
GAAGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATC
AATAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAG
AGGAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGG
ACAGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGG
GATGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGaGGCCCTAAAAGA
GGTGAAACAAGACTATTTTTGTGGTGTGGATAATGCTATGGAACCACTGC
TGACCAGTAGTCACTCTATTGTGGACGGAAAAGTTAAATCCATTGGTCAC
TTGTTCGCTTCTTCAATTTGTAACCATGGCCCAGCACCAAACTTTTTAGC
ACCATGGTTGTTTGACTACATTGTTGGTGGAGTTGAGAAAATGTTCAAAG
TTCTACCTGTTGAATTGGATCGTGAATCCCAGTTAGGAGTTATGTATAGC
AAGAACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGAAT
GAGTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAAAA
TAGATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAGAT
GATGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTTAA
AGATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcctca
ctgaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAATG
GATATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATGCC
CATAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGCAA
TGATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAGGA
AGAGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATCAA
TAGCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAGAG
GAAGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGGAC
AGAATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGGGA
TGAAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGaGGCCCTAAAAGAGG
TGAAACAAGACTATTTTTGTGGTGTGGATAATGCTATGGAACCACTGCTG
ACCAGTAGTCACTCTATTGTGGACGGAAAAGTTAAATCCATTGGTCACTT
GTTCGCTTCTTCAATTTGTAACCATGGCCCAGCACCAAACTTTTTAGCAC
CATGGTTGTTTGACTACATTGTTGGTGGAGTTGAGAAAATGTTCAAAGTT
CTACCTGTTGAATTGGATCGTGAATCCCAGTTAGGAGTTATGTATAGCAA
GAACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGAATGA
GTGATAATGTTCCTAAAACGTATCTTGAAAAACAAGAAGACAAGAAAATA
GATGATTATTTTAATTCCAACGCTGCAGACAAGGCTTCAGATTCAGATGA
TGAGAATATTGAGAATATCACGATTGTTCCCAAAAGAATTGAAGTTAAAG
ATGATGTGGTTGTCATAAATGCTGATGCAGAGGCGAAAACAAAcctcact
gaaaaaaattatccatGTCCTACTTGTAGAACACTCTTTTCATTAATGGA
TATAGAAACACATGCTGATGAGTGTGCCAATAATGCCCCAAACATGCCCA
TAATAATTGATGATGAAGAAACATTTACATCTTATAACGAGGAAGCAATG
ATGGAACAAATGCAAACAGAACCCAGAGAAGAGACTCAAGGAACAGGAAG
AGTATTACAGTCAGAAGAGGTACGTGAAATAGTACAAACCACCATCAATA
GCATTGAAGTTAAGGATAATGAAAGTATAAACTTAATTGTATTCAGAGGA
AGCTGTTTCAAAGACTTTCATAATCATTTCAAAAAACCTTGGAGGGACAG
AATAGCTGCAAAATTATGTATCAAATTTGCTGGAGAAGTTGGTAGGGATG
AAGGTGGCGGTGTCAGCAGAGAGTTTTACACAGaGGCCCTAAAAGAGGTG
AAACAAGACTATTTTTGTGGTGTGGATAATGCTATGGAACCACTGCTGAC
CAGTAGTCACTCTATTGTGGACGGAAAAGTTAAATCCATTGGTCACTTGT
TCGCTTCTTCAATTTGTAACCATGGCCCAGCACCAAACTTTTTAGCACCA
TGGTTGTTTGACTACATTGTTGGTGGAGTTGAGAAAATGTTCAAAGTTCT
ACCTGTTGAATTGGATCGTGAATCCCAGTTAGGAGTTATGTATAGCAAGA
ACCATTTTGCTAAAGAAGATGGAACCATACATACCATTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009498-exon-sc0000095-1491911889:651020..651856 | TCONS_00009498-exon-sc0000095-1491911889:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1510915933:651020..651856 | TCONS_00009498-exon-sc0000095-1510915933:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1575043694:651020..651856 | TCONS_00009498-exon-sc0000095-1575043694:651020..651856 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1491911889:652729..652994 | TCONS_00009498-exon-sc0000095-1491911889:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1510915933:652729..652994 | TCONS_00009498-exon-sc0000095-1510915933:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1575043694:652729..652994 | TCONS_00009498-exon-sc0000095-1575043694:652729..652994 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1491911889:655473..655726 | TCONS_00009498-exon-sc0000095-1491911889:655473..655726 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1510915933:655473..655726 | TCONS_00009498-exon-sc0000095-1510915933:655473..655726 | Clytia hemisphaerica | exon |
| TCONS_00009498-exon-sc0000095-1575043694:655473..655726 | TCONS_00009498-exon-sc0000095-1575043694:655473..655726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095 | supercontig | sc0000095:651020..655726 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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