Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009479 ID=TCONS_00009479|Name=TCONS_00009479|organism=Clytia hemisphaerica|type=transcript|length=1981bpRun BLAST on NCBI transcript from alignment at sc0000095:414376..423220+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009479 ID=TCONS_00009479|Name=TCONS_00009479|organism=Clytia hemisphaerica|type=transcript|length=8845bp|location=Sequence derived from alignment at sc0000095:414376..423220+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00009479 vs. Swiss-Prot (Human)
Match: CDC7 (Cell division cycle 7-related protein kinase OS=Homo sapiens GN=CDC7 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 4.960e-44 Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 75 KMENKKLLSPTRQSLFRACKSPAKQE-DIRIPEPEKKIKLGADLLNAFPEIAENFDIIKKVGEGTFSKVFLA--KMKCDSSKKVAFKHLVPTSSPGRIENELKCLQELGNKNNVLGIKTTLRRNDHIVFVLPYFPYRKFNDVMDRMSANDIQNYMRNLLIALKHVHSYKIIHRDIKPSNFLYCQETDSYALIDFGLAMPVPGTK 677 +M+ SP R F+A S K E + ++ +K I+ L A P+++ F I K+GEGTFS V+LA +++ +K+A KHL+PTS P RI EL+CL G ++NV+G+K R+NDH+V +PY + F D+++ +S +++ YM NL ALK +H + I+HRD+KPSNFLY + YAL+DFGLA TK Sbjct: 8 QMDEPMAFSPQRDR-FQAEGSLKKNEQNFKLAGVKKDIE---KLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTK 207 HSP 2 Score: 135.961 bits (341), Expect = 1.135e-33 Identity = 87/235 (37.02%), Postives = 122/235 (51.91%), Query Frame = 3 Query: 789 CNICRNRPRQKAPRAGTPGFRSPEVLMRYPNQTTAVDMWAAGVVFLCLLSRRYPFFKAKDDMEALSQIIVLFGSKKIKKMADSIGKTFDCSPPVENPDTLKVICEKLARRQCSL---------HRDYKEGSAKRKLSDPSAAATNSPNKKQVSETIIKDSNQSNRILADITLGKNRLTQXXXXXXXXXXXXXXXXXXQPVCACIPESAYDLLGKLLELNPDDRISASDGLKHPFI 1466 C+IC +R +Q APRAGTPGFR+PEVL + PNQTTA+DMW+AGV+FL LLS RYPF+KA DD+ AL+QI+ + GS++ + A + GK+ CS V D L+ +CE+L S H ++ +++ S P + + DSN + + +P+ AYDLL KLL+LNP RI+A + L HPF Sbjct: 360 CSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQD-LRKLCERLRGMDSSTPKLTSDIQGHASHQPAISEKTDHKASCLVQTPPGQYSGNSFKKGDSNSCEHCFDEYNTNLEGWNE------------------------VPDEAYDLLDKLLDLNPASRITAEEALLHPFF 569 The following BLAST results are available for this feature:
BLAST of TCONS_00009479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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