TCONS_00009391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009391
Unique NameTCONS_00009391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009391 ID=TCONS_00009391|Name=TCONS_00009391|organism=Clytia hemisphaerica|type=transcript|length=984bp
aaaaaatgaatagaatttcattttggtaGACACTCCTCTATCATAAAAGC
ATACTGTTGCATaataatttgttcattttttatttctttccagTGGTtga
aaaaagacaataaaatataatcaCAGAGAGATAGAGACAGAAGTTTCTGC
AGaggaataaaaatattttcagtttgaaaGAAGCATATTGCTGACTGGTT
GTTAAGGAtatcaataatttttattttttggaaaaaatgggaAATTCAAC
AAGCAAAAACAAGACTAAGGAGAGTGCAGCTCAAAACGGCAAAGCTCCTG
CTCCAGCAACTGAAGAGGAAGTGATCAAAACTCCCACCGCCGAGCCAGAG
GCCCCTGCTGCCGAAGCTCCTGCCGCCGAACCAGAAGCTCCTGCCGCCGA
GCCTGAAGCTCCTGCTGCTGAACCAAAAGCACCTGCTGCCGAGCCAGAGG
CCCCAGCAGCCGAACCAGAAGCCCCGAAAGTAGAGCCAGAAGCCCCAAAA
GTAGAACAGACTGAATCTAATCCAACAGAGGAAGCAAAATCGAGTTAAAA
CAAGGGGTGTTGTTAGTCTTCAGTTatcttttttacaaaatgaaaatgta
gCTCAAAGGTTAGAATAACCAAATATAGCGGAAGAGAATGTTTATCGTTG
CTCGTGGATGACTATCAAAGATGAATTCCATCAATAAAACTGTTGAAAAT
GCTACATCAGTGGAAAAAACATTGTGAATAAATGAATTTCTAATTAAACA
GAGAGAACGCTTGGTGATAGACTCACATAATGCATGCATAAACACGAACG
TCGAAAATATTTGTGAGAATGGTCAGAGATCTCATAATTATGAAGTTCCT
TCTTTCTCAATGAAAATAAccttatttttgtaaataataaacttgagttt
taaaatcaaaacacagTCTAGTCTAGTCACGCAAAATCTTGGCTACAATC
AATTCATCTGATTAGTCATTTTATTTTACCATTT
Run BLAST on NCBI

transcript from alignment at sc0000093:124998..128256-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009391 ID=TCONS_00009391|Name=TCONS_00009391|organism=Clytia hemisphaerica|type=transcript|length=3259bp|location=Sequence derived from alignment at sc0000093:124998..128256- (Clytia hemisphaerica)
AAAAAATGAATAGAATTTCATTTTGGTAGACACTCCTCTATCATAAAAGC
ATACTGTTGCATAATAATTTGTTCATTTTTTATTTCTTTCCAGTGGTTGA
AAAAAGACAATAAAATATAATCACAGAGAGATAGAGACAGAAGTTTCTGC
AGAGGAATAAAAATATTTTCAGTTTGAAAGAAGCATATTGCTGACTGGTT
GTTAAGGATATCAATAATTTTTATTTTTTGGAAAAAATGGGAAATTCAAC
AAGCAAAAACAAGACTAAGGAGAGTGCAGGTGAGATTTCGTTTTTGTTTT
GATTTTACATTCCCATAAAGATTCTGCAACGGTTTTGTTTATTCTTGCTA
AAAACTAAATTAATATTTAGGCACACTTTCTCTCTTTAATTAAGGATCGT
TAGTATTTCTGCTGAAGTTGTCAATTACAGCGAGAAAGTCTTTCTTCCTA
ATAATGAAAGTTTTTTCCTTTTTCTATTTTTTGTTTATCATTGTTTTTGC
TTCACTAAAATAATTTTAAATTGGATCAGGACCTGCGTCTTAATGCTAAC
ACAACATCTTAGCTGGCACTGGGCGAAATAAGAGATTTCCATGTTGAAAA
TATGATATTTCCATATACTTTTGTAAATATCATATTTTCAAAATATTTCC
AACTTTTGGAAATATGATATTTCCAAAAATTGGAAATATCATGAAATATG
ATATTTCCACAACTTTGGAAATATGGAAAAGTCATATTTTTATATTTTCA
AGATATTTCCAGGATTGGAAATCTCTTATTTCGCCCAGTGTGTATTTTCG
ACAAAGATTCACTCAAATCGATAAAAGGAGTGACTAATACTTTCAGGAAC
TGAAGGAATTTAACTTTGCACGCAGACTCCTTCTGCTATATATATTGAAC
GAAAATGACGAGATTTCTCCACTTTTTTATAACAATTTTAGCTGTAAAGG
AAACTGTTTCATAAAATAACTCACTGTAATGACAGTTTACAATCAGAAAT
ATGTTCGTTATGTGGTTTTAATAAATTTTACCCAGCTATAAGCAGTGCAA
TGATAGATTTTCATGACTTGATAGTTTGATTGTACACAGTAGTGATTATT
TTGTATCCCCCGTCTGATTAGCACTTGTGAAAAAATGCCCGAGGGGAGCA
GCCCAGTTACATTGAAAAACAATGAATGATGACTCCAACAATCCCTGAGA
AACTTCTGAAAAACTAGAAAACTATTTTAAAAAACTATATTAGCAGTAGT
ATTTCAAGACCTGTGTCTCGGTGGCTCGGAAACTTGAAATCAATGGGGAT
TGAGAACTCCGCCCATCCCACCAAAATCTTCCAAAATCTCCTGTTTGAGC
GAGAAGGTATTTACGATGATAATTAGTCATTGAATGAAAGATTCAAATTT
ATACAGGAAAGAGTAAAAAATTGAAAGATAAACTCACTTTTCAAAGAGAA
AGAGACGAAGGAATAATCATAATTCATCCTTTCCACATGTTATATAATCC
TGTAATATTCCTTATCTTTCATTGAACTCATTCAATCAATTTGTTATCAT
AACGTAAAGCATGAATGGCGCACCCTGTGGACCCTGTTTTGATAGTGAAA
TCCTCCTTAAGCTCTTATTAAGCCCTTCTAATCACGCATTATGAGTTTTT
GAAAATGATCCGTGTGTCTGGATTTCTCATTCCCCCTTTTTTCAATTGAT
TATATATTACATTGTGTAAGCCTGCGACACGTAAACCCCTTCTTGATTTG
CTGGGGCCTCAAAAGCCCTACACAAAGTCCTGTACATTTCTTCTCCAATC
TGAAGAACTATTGCAGTGATAATCATTTTCTAAGCTTTTGAAAGAATATG
CCTTGAAGCAGAGAGAAGCATCAAAGGATTTGATATTTGTAAAATATATA
AGCTTTTTTATAAAGGCTGTTTTAATTTTTTCGTGATTTTAAGGTTTAAA
TATTTGAAAAAATGTGACAAGCTCGAAATATGAAATCAATCTGCTTTACA
CAAATCTCCATCAGCTTCAAGTTGGGGTGAATACGTTAGATCTTCCAAAT
AAGAGGGAGGGAATATATTATCGCTATGGAATTTTTCTTCTATTCTTTCT
CTTAAATGGACTTTGAACTTTCGAAAAGATAAAACCTCAGTATTAAACAA
CTTTTTTTGTCATATCTTTCTTTCTTTTAATATCATATCTTTTTTTCACT
GATACTTATCTCTTGGAATGTCAAGAGCAAGAGATGATGTAACTTCTGTA
AATATCCAATTCAAAACGTGACTTGATCCATGCCAACTGTATTCCGTATC
ATTTATATGCTCGAATAAAATTATAAAGTGCCCCTAAGTATAACCTTAAA
TTCAAGCTAACATATTTAATCTTCAGCATAAATATCATTTTCTTAACACT
CTTTCAGCTCAAAACGGCAAAGCTCCTGCTCCAGCAACTGAAGAGGAAGT
GATCAAAACTCCCACCGCCGAGCCAGAGGCCCCTGCTGCCGAAGCTCCTG
CCGCCGAACCTGAAGCACCAGCAGCCGAACCAGAGGCACCTGCCGCCGAA
CCAGAGGCTCCTGCCGCCGAACCAGAAGCACCAGCAGCCGAACCAGAAGC
ACCAGCAGCCGAACCTGAAGCACCAGCAGCCGAACCAGAAGCACCAACAG
CCGAACCAGAGGCTCCTGCCGCCGAGCCTGAAGCTCCTGCTGCTGAACCA
AAAGCACCTGCTGCCGAGCCAGAGGCCCCAGCAGCCGAACCAGAAGCCCC
GAAAGTAGAGCCAGAAGCCCCAAAAGTAGAACAGACTGAATCTAATCCAA
CAGAGGAAGCAAAATCGAGTTAAAACAAGGGGTGTTGTTAGTCTTCAGTT
ATCTTTTTTACAAAATGAAAATGTAGCTCAAAGGTTAGAATAACCAAATA
TAGCGGAAGAGAATGTTTATCGTTGCTCGTGGATGACTATCAAAGATGAA
TTCCATCAATAAAACTGTTGAAAATGCTACATCAGTGGAAAAAACATTGT
GAATAAATGAATTTCTAATTAAACAGAGAGAACGCTTGGTGATAGACTCA
CATAATGCATGCATAAACACGAACGTCGAAAATATTTGTGAGAATGGTCA
GAGATCTCATAATTATGAAGTTCCTTCTTTCTCAATGAAAATAACCTTAT
TTTTGTAAATAATAAACTTGAGTTTTAAAATCAAAACACAGTCTAGTCTA
GTCACGCAAAATCTTGGCTACAATCAATTCATCTGATTAGTCATTTTATT
TTACCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005259XLOC_005259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009391-exon-sc0000093-1575043694:127978..128256TCONS_00009391-exon-sc0000093-1575043694:127978..128256Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1575043694:125764..125849TCONS_00009391-exon-sc0000093-1575043694:125764..125849Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1575043694:125680..125700TCONS_00009391-exon-sc0000093-1575043694:125680..125700Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1575043694:124998..125595TCONS_00009391-exon-sc0000093-1575043694:124998..125595Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1510915933:127978..128256TCONS_00009391-exon-sc0000093-1510915933:127978..128256Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1510915933:125764..125849TCONS_00009391-exon-sc0000093-1510915933:125764..125849Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1510915933:125680..125700TCONS_00009391-exon-sc0000093-1510915933:125680..125700Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1510915933:124998..125595TCONS_00009391-exon-sc0000093-1510915933:124998..125595Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1491911889:127978..128256TCONS_00009391-exon-sc0000093-1491911889:127978..128256Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1491911889:125764..125849TCONS_00009391-exon-sc0000093-1491911889:125764..125849Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1491911889:125680..125700TCONS_00009391-exon-sc0000093-1491911889:125680..125700Clytia hemisphaericaexon
TCONS_00009391-exon-sc0000093-1491911889:124998..125595TCONS_00009391-exon-sc0000093-1491911889:124998..125595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:124998..128256 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.09994	2.16855	2.82402	3.16014	0.343285	0.372886	2.32886	1.46078	0.623293	6.52846	2.74014	0.688808	1.31825	1.07614	2.58745	1.76332	24.2804	21.0016	1.58049	2.68813	69.5639	73.7746	58.5304	72.3162	59.5767	40.8607	42.4021	53.0277	24.0945	15.1524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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