TCONS_00009387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009387
Unique NameTCONS_00009387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009387 ID=TCONS_00009387|Name=TCONS_00009387|organism=Clytia hemisphaerica|type=transcript|length=656bp
ATTTGTATTTATTTGTTGCACAAGAatgattttttctctttttcatttta
gatACAATGTCTCAACCGGTGAGacTCTACACTAAAGGCATCTTTGTTGG
ATACCAAAGAGGATTGAGAAATCAACATGAGCAATGTTCACTTTTGAAAT
TGGAAGGTGTCACTAACAAAGCTGAAACAGACTTCTACTTAGGAAAACGT
GTTGCTTACGTATACAGAGTTTCAAACAAATCAGTTGCCAAAGGAAACCG
AAAAGCCAGCAAGGTTAGAGTCATCTGGGGAAAAGTAACTCGACCACATG
GCAGCACTGGAACCGTCCGTGCCAAATTCAGACACAATCTTCCACCAAAA
GCTATTGGTGCCTCAGTCAGAATCaTGATGTATCCATCAAGAGTATGAAT
ATTTTGagacagaaaaaaatttgaaaaatcaaaactactGATTTTCCTGT
TTACTTTTCCTCTCTATTTGTGatattttaattttcgcggttgacaCCCA
CTTCTGTCGAAAttcttctttcattttgaatagaaagtagttttaataaa
atctgctgggatTTAATCGCCATTGCAAtaattcaaaacgaggcaagtga
tgtttgtaacataatttatgaaaaggtctatttatagtaaaaattgcatt
tcgcgg
Run BLAST on NCBI

protein sequence of TCONS_00009387-protein

>TCONS_00009387-protein ID=TCONS_00009387-protein|Name=TCONS_00009387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MSQPVRLYTKGIFVGYQRGLRNQHEQCSLLKLEGVTNKAETDFYLGKRVA
YVYRVSNKSVAKGNRKASKVRVIWGKVTRPHGSTGTVRAKFRHNLPPKAI
GASVRIMMYPSRV
Run BLAST on NCBI

transcript from alignment at sc0000093:21859..24916-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009387 ID=TCONS_00009387|Name=TCONS_00009387|organism=Clytia hemisphaerica|type=transcript|length=3058bp|location=Sequence derived from alignment at sc0000093:21859..24916- (Clytia hemisphaerica)
ATTTGTATTTATTTGTTGCACAAGAATGATTTTTTCTCTTTTTCATTTTA
GATACAATGTCTCAACCGGTGAGGTAAGTTCATGCCTGTTAAGCATCAGG
TAAACGGATGCTGCCCCTCCTGATATCACTTAAATGTTGGTAAAAACACC
AGAAAAAGTGCCTATCTGGCTACAAACTGAGACTGTCCTGCCTTTCTAGA
GTATGAGCTGTAAAATGTCTGATCGGTGTAGATTATCTTCAAATTTGATT
TGATTTGGCAGAACCCTGTTTTAATGTCCATGAATTTTGAGCTCTGCTAT
GCGGTTAGTGTAAAACACAGGTCACAGGTCACAGGTCACGGGTCACAGGT
CACAGGTCACAGGTCACAGGTCAGTGTTGACAGGTCAGCTTCAATTACTG
TAAAACACAAAGAAAATGTTTGAAAAACAGTTGTTAATGTCAAAAATATA
TTTCCAAAGGTATTTTACTGATCTAGAACTATTTTAAAGCTAAAAATCTA
CCCACGTGCTTACCACGTGATTTCGTGTTTTGTGCCGTGTATAACACAGA
CCTGGAATACTTGTATTATATATTACATCTATATCACACATGTAAAAAAA
TTATATTTTCAATGTTATACGCATGTTACGTATGTTATATACAAAGAAAA
AAGAAATATTCGAATATCGATCTCACCTTTGCTTTAAACAGCCCCCTAAC
AGGAAAATAGCTATTTCACAATCACTATGTCATATCTCATTTTATCTCCT
GCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTGTTAATTGGTGTACAAAACCTCATACTTTGGGATAACATCATTA
TTTACATAATTTAAGTGTCATTTGTTGTCAATATTTGGGGTTGATGATTT
GTCGTTTAAGCCTTCTTAAATAACATATTTTGATATTACATTTCCATTAC
ATATAATATTTTCAGAAACTGATGTTATGAGTTGTATGTTACGAGTGCGT
TACAGTTTTCCGGTCTGTAATTTGTATGACCTGTGACCCGTGACCTGTGA
CCTGTGACCTGTGTTTTACACTAACCGTCTGCTATGTCTGTAGAAAATAA
CAGCTTGCTCTCGTTTTTTCCTGCATTAAATACTTGATTAGTTATTATGA
GAAAGTTCATTACCAAAACATAAATGTTAGGCTTAAACAACAAACACTGC
TTTCAGAGATCAGTATAGATATTTGCATGACTTGTTTTTCATTCAAGATT
TGCTTTTGGCATTGTTGAAAAAATTTCTTTTTTTTTAGACTCTACACTAA
AGGCATCTTTGTTGGATACCAAAGAGGATTGAGAAATCAACATGAGCAAT
GTTCACTTTTGAAATTGGAAGGTGTCACTAACAAAGCTGAAACAGACTTC
TACTTAGGAAAACGTGTTGCTTACGTATACAGAGTTTCAAACAAATCAGT
TGCCAAAGGAAACCGAAAAGCCAGCAAGGTTAGAGTCATCTGGGGAAAAG
TAACTCGACCACATGGCAGCACTGGAACCGTCCGTGCCAAATTCAGACAC
AATCTTCCACCAAAAGCTATTGGTGCCTCAGTCAGAATCGTAAGTTTTTA
ACCTACTTATTTTTCTACGATTCGCGGTTTAAATAATTATCAAAGTCTGA
GTCTTATTCTTTGAAACCTTTCGGATAAGAATAATTTCGTCAAAATCACA
TTCAACCGAGACTGAACCTGGTAAAATGTCTTCAAATGATCATTTTATGG
CTAATGTTTTTGTTTTTCTTTTGTAGATGATGTATCCATCAAGAGTATGA
ATATTTTGAGACAGAAAAAAATTTGAAAAATCAAAACTACTGATTTTCCT
GTTTACTTTTCCTCTCTATTTGTGATATTTTAATTTTCGCGGTTGACACC
CACTTCTGTCGAAATTCTTCTTTCATTTTGAATAGAAAGTAGTTTTAATA
AAATCTGCTGGGATTTAATCGCCATTGCAATAATTCAAAACGAGGCAAGT
GATGTTTGTAACATAATTTATGAAAAGGTCTATTTATAGTAAAAATTGCA
TTTCGCGG

Coding sequence (CDS) from alignment at sc0000093:21859..24916-

>TCONS_00009387 ID=TCONS_00009387|Name=TCONS_00009387|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000093:21859..24916- (Clytia hemisphaerica)
ATGATGTATCCATCAAGAGTATGAACTCTACACTAAAGGCATCTTTGTTG
GATACCAAAGAGGATTGAGAAATCAACATGAGCAATGTTCACTTTTGAAA
TTGGAAGGTGTCACTAACAAAGCTGAAACAGACTTCTACTTAGGAAAACG
TGTTGCTTACGTATACAGAGTTTCAAACAAATCAGTTGCCAAAGGAAACC
GAAAAGCCAGCAAGGTTAGAGTCATCTGGGGAAAAGTAACTCGACCACAT
GGCAGCACTGGAACCGTCCGTGCCAAATTCAGACACAATCTTCCACCAAA
AGCTATTGGTGCCTCAGTCAGAATCATGTCTCAACCGGTGAGATGATGTA
TCCATCAAGAGTATGAACTCTACACTAAAGGCATCTTTGTTGGATACCAA
AGAGGATTGAGAAATCAACATGAGCAATGTTCACTTTTGAAATTGGAAGG
TGTCACTAACAAAGCTGAAACAGACTTCTACTTAGGAAAACGTGTTGCTT
ACGTATACAGAGTTTCAAACAAATCAGTTGCCAAAGGAAACCGAAAAGCC
AGCAAGGTTAGAGTCATCTGGGGAAAAGTAACTCGACCACATGGCAGCAC
TGGAACCGTCCGTGCCAAATTCAGACACAATCTTCCACCAAAAGCTATTG
GTGCCTCAGTCAGAATCATGTCTCAACCGGTGAGATGATGTATCCATCAA
GAGTATGAACTCTACACTAAAGGCATCTTTGTTGGATACCAAAGAGGATT
GAGAAATCAACATGAGCAATGTTCACTTTTGAAATTGGAAGGTGTCACTA
ACAAAGCTGAAACAGACTTCTACTTAGGAAAACGTGTTGCTTACGTATAC
AGAGTTTCAAACAAATCAGTTGCCAAAGGAAACCGAAAAGCCAGCAAGGT
TAGAGTCATCTGGGGAAAAGTAACTCGACCACATGGCAGCACTGGAACCG
TCCGTGCCAAATTCAGACACAATCTTCCACCAAAAGCTATTGGTGCCTCA
GTCAGAATCATGTCTCAACCGGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005256XLOC_005256Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009387-proteinTCONS_00009387-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009387-exon-sc0000093-1575043694:24844..24916TCONS_00009387-exon-sc0000093-1575043694:24844..24916Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1575043694:22328..22628TCONS_00009387-exon-sc0000093-1575043694:22328..22628Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1575043694:21859..22140TCONS_00009387-exon-sc0000093-1575043694:21859..22140Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1510915933:24844..24916TCONS_00009387-exon-sc0000093-1510915933:24844..24916Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1510915933:22328..22628TCONS_00009387-exon-sc0000093-1510915933:22328..22628Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1510915933:21859..22140TCONS_00009387-exon-sc0000093-1510915933:21859..22140Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1491911889:24844..24916TCONS_00009387-exon-sc0000093-1491911889:24844..24916Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1491911889:22328..22628TCONS_00009387-exon-sc0000093-1491911889:22328..22628Clytia hemisphaericaexon
TCONS_00009387-exon-sc0000093-1491911889:21859..22140TCONS_00009387-exon-sc0000093-1491911889:21859..22140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:21859..24916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1101.4	1053.22	1259.37	1381.82	791.723	619.54	936.326	963.796	1839.26	1553.42	1830.72	2394.62	2730.44	2437.71	2568.16	2341.25	2637.38	2614.8	1519.85	1811.66	2207.37	2082.54	1669.44	1631.94	1544.09	1450.61	1992.79	2130.01	1374.16	1404.27
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001780Ribosomal_L35A
IPR018266Ribosomal_L35Ae_CS
IPR009000Transl_B-barrel
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00009387 vs. Swiss-Prot (Human)
Match: RL35A (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 9.922e-43
Identity = 68/108 (62.96%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:   72 RLYTKGIFVGYQRGLRNQHEQCSLLKLEGVTNKAETDFYLGKRVAYVYRVSNKSVAKGNRKASKVRVIWGKVTRPHGSTGTVRAKFRHNLPPKAIGASVRIMMYPSRV 395
            RL++K IF GY+RGLRNQ E  +LLK+EGV  + ET+FYLGKR AYVY+  N +V  G  K +K RVIWGKVTR HG++G VRAKFR NLP KAIG  +R+M+YPSR+
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG-KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
The following BLAST results are available for this feature:
BLAST of TCONS_00009387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL35A9.922e-4362.9660S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
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