TCONS_00009387-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009387-protein
Unique NameTCONS_00009387-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length113

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009387-protein ID=TCONS_00009387-protein|Name=TCONS_00009387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MSQPVRLYTKGIFVGYQRGLRNQHEQCSLLKLEGVTNKAETDFYLGKRVA
YVYRVSNKSVAKGNRKASKVRVIWGKVTRPHGSTGTVRAKFRHNLPPKAI
GASVRIMMYPSRV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005256XLOC_005256Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009387TCONS_00009387Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001780Ribosomal_L35A
IPR018266Ribosomal_L35Ae_CS
IPR009000Transl_B-barrel
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.10.190coord: 5..113
e-value: 5.6E-49
score: 164.0
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 7..107
e-value: 3.6E-43
score: 145.6
IPR001780Ribosomal protein L35APRODOMPD012670coord: 10..106
e-value: 2.0E-31
score: 332.0
IPR018266Ribosomal protein L35Ae, conserved sitePROSITEPS01105RIBOSOMAL_L35AEcoord: 75..96
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 7..107

Blast
[Close]
BLAST of TCONS_00009387-protein vs. Swiss-Prot (Human)
Match: RL35A (60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.655e-46
Identity = 68/108 (62.96%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    6 RLYTKGIFVGYQRGLRNQHEQCSLLKLEGVTNKAETDFYLGKRVAYVYRVSNKSVAKGNRKASKVRVIWGKVTRPHGSTGTVRAKFRHNLPPKAIGASVRIMMYPSRV 113
            RL++K IF GY+RGLRNQ E  +LLK+EGV  + ET+FYLGKR AYVY+  N +V  G  K +K RVIWGKVTR HG++G VRAKFR NLP KAIG  +R+M+YPSR+
Sbjct:    4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG-KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
The following BLAST results are available for this feature:
BLAST of TCONS_00009387-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL35A7.655e-4662.9660S ribosomal protein L35a OS=Homo sapiens GN=RPL3... [more]
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