TCONS_00009344 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009344
Unique Name	TCONS_00009344
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1918

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000093:82669..85538+
coding sequence from alignment at sc0000093:82669..85538+

transcript sequence

>TCONS_00009344 ID=TCONS_00009344|Name=TCONS_00009344|organism=Clytia hemisphaerica|type=transcript|length=1918bp
TTGATCCACGTGAAATATTTAAATTCTTGTCTCGCAAAAATTAGtacacg
caaaaatttatccaATTAAGGTATACAATAAGAAAACCCTTTAATTCTTC
ATACATTTCAAAAGATTTAGTACTATTATAGGCACTTAAAAAATGATCCT
GCTTCTTCAGAACTTGAAGAGCATGAAAACCATGGGATCATTGATCATTT
TAAAAGACGGGATTGCTTTTTGGAATGTGGGAATGCCATTGCCAAGGCAT
TATGAACCAGTCAGGGAGTTAGATAAAGGCCTAGAATGTGTTTTTTATGC
CTTTCTTTTTAACTGTGTTTGCTTTGACTATTTAAAGTTTCAACTATGTT
ATAATTGGTCTGTAATTATTTGTTCTTAATGAGTTATAATTAAGCTTGTT
TTTATTACATGTCTTTCATTATCTCTGCTTTGAGGTCAGGAAGTCTGCAA
AGCTTTGTTTGCATGTTAAAACTATTATCTAAAGATTATAAAACTCAAGA
TTTGATATCttagatttttcattttaaacagTAAGAAAGGTGAAGTAAAA
ctaaatataaaaagaaaatgggTACTGATTTTTCAAATGCActgaaaaaa
ttcaaactggTTTTTTTAGGTGAACAGAGTGtTGGGAAGACATCACTCAT
CACACGATTTATGTATGATAGTTTTGACAGTACATACCAGgcAACCATAG
GCATAGATTTCCTTTCAAAGACCATGTACTTGGAGGATCGAACGGTTCGC
TTGCAAATTTGGGACACAGCAGGGCAAGAGAGATTTAGAAGTTTGATTCC
AAGTTATATCAGAGATTCTTCTGCTGCAGTTGTTGTCTATGATATTTCAA
GTACAAATTCCTTTGCTCAAGTAGATCGTTGGATAGAAGATGTCCGTGCA
GAGAGAGGCCAAGATGTTGTTATAATGTTGGTTGGTAACAAAACAGATTT
AACAGATAAAAGACGCGTTTCCATGGAGCAAGGGGAAAGAAGAGCTAAAG
AATTAGGAGTTTTATTTATTGAGAGTAGTGCAAAGACAGGTCATAACGTG
AAACAGCTATTCAGACGGGTTGCAGCAGCTTTACCAGGCATTGACAgtaa
agaagatgaaaaaccAAACAACATTAACCAAGTCATTCACCCAAAGATTG
ATGATGAGCCGCAAAGCTCATGTGGTTGCTGATCAATGTGATATATAGAT
TTTAGGCTTAGaaattaatcaaattaataCCAATTATTAACAACAGTCGA
TAGTTTGGTCTTATTTGGAAGAAAGACACATTCTGGAAAGAAAAAGAGAT
CTTGCTTGAAATGAAATGCCTTTTCAGTCAAATTGTTATTCTGGCATTTT
GCTTAAGGAAAGCACATGCCATTAATATGAAGGCTGCTTTAATATTAGAG
TTTGATACTTTGAATATAAAATAGGCCAACAGAACTATTATATCAAACTA
TCAAGCTGCCAGGATAACGCACATAGTGCGTAACATTGTCTTACCGTAAT
GATATCTTTTTAaggaagaaattgattttttgtgaGAAGACcttcttttt
tatattatgaaaagTATTAATTTTCTTACCTTGTACAgcataatattttt
attttaaaagaaaacaaaaataaatatatattaCAGAGCCAAATAGTTAT
TTTTTAATATATAGAAAAAGAAGTATACTAGGAGTATATTATACTTGCCC
ACCAGCATTTTAGcagtaaaacttttttatttcaataagtTATGTTATTA
TGATAAAAACAAGAGTACAAGTTAGATAAAAAACTCAAGTCATAAAAGAC
ATGATCTTAAATAAAAAGATTGAGTTTAAATCTGCTTTGTtttgtaaaat
taaattttatttcattttttccttttttgattatttatcatttttctttt
tgactatTTATCCACcag

Run BLAST on NCBI

protein sequence of TCONS_00009344-protein

>TCONS_00009344-protein ID=TCONS_00009344-protein|Name=TCONS_00009344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MGTDFSNALKKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLS
KTMYLEDRTVRLQIWDTAGQERFRSLIPSYIRDSSAAVVVYDISSTNSFA
QVDRWIEDVRAERGQDVVIMLVGNKTDLTDKRRVSMEQGERRAKELGVLF
IESSAKTGHNVKQLFRRVAAALPGIDSKEDEKPNNINQVIHPKIDDEPQS
SCGC

Run BLAST on NCBI

transcript from alignment at sc0000093:82669..85538+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009344 ID=TCONS_00009344|Name=TCONS_00009344|organism=Clytia hemisphaerica|type=transcript|length=2870bp|location=Sequence derived from alignment at sc0000093:82669..85538+ (Clytia hemisphaerica)
TTGATCCACGTGAAATATTTAAATTCTTGTCTCGCAAAAATTAGtacacg
caaaaatttatccaATTAAGGTATACAATAAGAAAACCCTTTAATTCTTC
ATACATTTCAAAAGATTTAGTACTATTATAGGCACTTAAAAAATGATCCT
GCTTCTTCAGAACTTGAAGAGCATGAAAACCATGGGATCATTGATCATTT
TAAAAGACGGGATTGCTTTTTGGAATGTGGGAATGCCATTGCCAAGGCAT
TATGAACCAGTCAGGGAGTTAGATAAAGGCCTAGAATGTGTTTTTTATGC
CTTTCTTTTTAACTGTGTTTGCTTTGACTATTTAAAGTTTCAACTATGTT
ATAATTGGTCTGTAATTATTTGTTCTTAATGAGTTATAATTAAGCTTGTT
TTTATTACATGTCTTTCATTATCTCTGCTTTGAGGTCAGGAAGTCTGCAA
AGCTTTGTTTGCATGTTAAAACTATTATCTAAAGATTATAAAACTCAAGA
TTTGATATCttagatttttcattttaaacagTAAGAAAGGTGAAGTAAAA
ctaaatataaaaagaaaatgggTACTGATTTTTCAAATGCActgaaaaaa
ttcaaactggTTTTTTTAGGTGAACAGAGTGGTAAGTCTTTTGTTTTGcc
cttttctttattttaattCTTGCTTTTTGACTGGCGAAAGACCTATCCAC
TCACATTGTTTAAACAACATTTTCAAATAGTTTGGACTAAATGGATAAAA
CAGGGATAAAACAATACTTTGTTGTTTTGgctattgaaatttgattttta
gatGAAGACACAGATCAATTTGGGTTTGAACATTCTGTCATAAATGTTTG
AGCCCTGATTTAtgaatttgcaatttttcttgctttagtTGGGAAGACAT
CACTCATCACACGATTTATGTATGATAGTTTTGACAGTACATACCAGGTA
taataaatgtaaatttatCCCTTTTACAATTATTCGAAGATATTATTTTT
CATGGTGAAcaaatgcaaatttttgctcgcaCAATGCTGAGAGGAggcag
tgaaagttattgtttcttttatttagAAATATTGTGTAAGCAAATGATAG
TTGATGTCCTTTTTTAGATCATCTTTCAATCTTTATTTTGTTCCCTCCAC
TTCattacaatatttttattttctaggcAACCATAGGCATAGATTTCCTT
TCAAAGACCATGTACTTGGAGGATCGAACGGTAAGTTCTCTATCAACGAT
TTGTATCAGCTTCAAGCATCTGGCATTTGTTATTAACTGAGTAGTTTTGT
AATCCTAAACATATACTACACAATACTTTGTGTGTTTCTACTACTTTCAA
AGAGATAATAATTGTTTTCCTTTGCTCAGGTTCGCTTGCAAATTTGGGAC
ACAGCAGGGCAAGAGAGATTTAGAAGTTTGATTCCAAGTTATATCAGAGA
TTCTTCTGCTGCAGTTGTTGTCTATGATATTTCAAGTAAGTTTTATTGCa
atttgatattctttttgCAGATGTGGTAACGATAGCTGGTGATGATGATA
CATATTTTCAATCGTCAAATTTGTATGAAATGCTTTAGActgatattgat
atttttaatcgaTTAGGTACAAATTCCTTTGCTCAAGTAGATCGTTGGAT
AGAAGATGTCCGTGCAGAGAGAGGCCAAGATGTTGTTATAATGTTGGTTG
GTAACAAAACAGATTTAACAGATAAAAGACGCGTTTCCATGGAGCAAGGG
GAAAGAAGAGCTAAAGAATTAGGAGTTTTATTTATTGAGAGTAGTGCAAA
GACAGGTCATAACGTGAAACAGGTTTGTATTTGGGATCAAACTCATCCAT
TGTCTTATTTTagctcaaaaagtttttgataattATACAACGTTAATCTT
TTTCATATTCttctattgaaatatctttcaaagctTCTTGGGCTTCTACC
ATAAATTTGTTAAATCGGAATGAATAAAATCTAAACAATGAGTTTGTATC
ATTTTTAGCTATTCAGACGGGTTGCAGCAGCTTTACCAGGCATTGACAgt
aaagaagatgaaaaaccAAACAACATTAACCAAGTCATTCACCCAAAGAT
TGATGATGAGCCGCAAAGCTCATGTGGTTGCTGATCAATGTGATATATAG
ATTTTAGGCTTAGaaattaatcaaattaataCCAATTATTAACAACAGTC
GATAGTTTGGTCTTATTTGGAAGAAAGACACATTCTGGAAAGAAAAAGAG
ATCTTGCTTGAAATGAAATGCCTTTTCAGTCAAATTGTTATTCTGGCATT
TTGCTTAAGGAAAGCACATGCCATTAATATGAAGGCTGCTTTAATATTAG
AGTTTGATACTTTGAATATAAAATAGGCCAACAGAACTATTATATCAAAC
TATCAAGCTGCCAGGATAACGCACATAGTGCGTAACATTGTCTTACCGTA
ATGATATCTTTTTAaggaagaaattgattttttgtgaGAAGACcttcttt
tttatattatgaaaagTATTAATTTTCTTACCTTGTACAgcataatattt
ttattttaaaagaaaacaaaaataaatatatattaCAGAGCCAAATAGTT
ATTTTTTAATATATAGAAAAAGAAGTATACTAGGAGTATATTATACTTGC
CCACCAGCATTTTAGcagtaaaacttttttatttcaataagtTATGTTAT
TATGATAAAAACAAGAGTACAAGTTAGATAAAAAACTCAAGTCATAAAAG
ACATGATCTTAAATAAAAAGATTGAGTTTAAATCTGCTTTGTtttgtaaa
attaaattttatttcattttttccttttttgattatttatcatttttctt
tttgactatTTATCCACcag

Coding sequence (CDS) from alignment at sc0000093:82669..85538+

>TCONS_00009344 ID=TCONS_00009344|Name=TCONS_00009344|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at sc0000093:82669..85538+ (Clytia hemisphaerica)
atgggTACTGATTTTTCAAATGCActgaaaaaattcaaactggTTTTTTT
AGGTGAACAGAGTGtTGGGAAGACATCACTCATCACACGATTTATGTATG
ATAGTTTTGACAGTACATACCAGgcAACCATAGGCATAGATTTCCTTTCA
AAGACCATGTACTTGGAGGATCGAACGGTTCGCTTGCAAATTTGGGACAC
AGCAGGGCAAGAGAGATTTAGAAGTTTGATTCCAAGTTATATCAGAGATT
CTTCTGCTGCAGTTGTTGTCTATGATATTTCAAGTACAAATTCCTTTGCT
CAAGTAGATCGTTGGATAGAAGATGTCCGTGCAGAGAGAGGCCAAGATGT
TGTTATAATGTTGGTTGGTAACAAAACAGATTTAACAGATAAAAGACGCG
TTTCCATGGAGCAAGGGGAAAGAAGAGCTAAAGAATTAGGAGTTTTATTT
ATTGAGAGTAGTGCAAAGACAGGTCATAACGTGAAACAGCTATTCAGACG
GGTTGCAGCAGCTTTACCAGGCATTGACAgtaaagaagatgaaaaaccAA
ACAACATTAACCAAGTCATTCACCCAAAGATTGATGATGAGCCGCAAAGC
TCATGTGGTTGCTGAatgggTACTGATTTTTCAAATGCActgaaaaaatt
caaactggTTTTTTTAGGTGAACAGAGTGtTGGGAAGACATCACTCATCA
CACGATTTATGTATGATAGTTTTGACAGTACATACCAGgcAACCATAGGC
ATAGATTTCCTTTCAAAGACCATGTACTTGGAGGATCGAACGGTTCGCTT
GCAAATTTGGGACACAGCAGGGCAAGAGAGATTTAGAAGTTTGATTCCAA
GTTATATCAGAGATTCTTCTGCTGCAGTTGTTGTCTATGATATTTCAAGT
ACAAATTCCTTTGCTCAAGTAGATCGTTGGATAGAAGATGTCCGTGCAGA
GAGAGGCCAAGATGTTGTTATAATGTTGGTTGGTAACAAAACAGATTTAA
CAGATAAAAGACGCGTTTCCATGGAGCAAGGGGAAAGAAGAGCTAAAGAA
TTAGGAGTTTTATTTATTGAGAGTAGTGCAAAGACAGGTCATAACGTGAA
ACAGCTATTCAGACGGGTTGCAGCAGCTTTACCAGGCATTGACAgtaaag
aagatgaaaaaccAAACAACATTAACCAAGTCATTCACCCAAAGATTGAT
GATGAGCCGCAAAGCTCATGTGGTTGCTGAatgggTACTGATTTTTCAAA
TGCActgaaaaaattcaaactggTTTTTTTAGGTGAACAGAGTGtTGGGA
AGACATCACTCATCACACGATTTATGTATGATAGTTTTGACAGTACATAC
CAGgcAACCATAGGCATAGATTTCCTTTCAAAGACCATGTACTTGGAGGA
TCGAACGGTTCGCTTGCAAATTTGGGACACAGCAGGGCAAGAGAGATTTA
GAAGTTTGATTCCAAGTTATATCAGAGATTCTTCTGCTGCAGTTGTTGTC
TATGATATTTCAAGTACAAATTCCTTTGCTCAAGTAGATCGTTGGATAGA
AGATGTCCGTGCAGAGAGAGGCCAAGATGTTGTTATAATGTTGGTTGGTA
ACAAAACAGATTTAACAGATAAAAGACGCGTTTCCATGGAGCAAGGGGAA
AGAAGAGCTAAAGAATTAGGAGTTTTATTTATTGAGAGTAGTGCAAAGAC
AGGTCATAACGTGAAACAGCTATTCAGACGGGTTGCAGCAGCTTTACCAG
GCATTGACAgtaaagaagatgaaaaaccAAACAACATTAACCAAGTCATT
CACCCAAAGATTGATGATGAGCCGCAAAGCTCATGTGGTTGCTGAatggg
TACTGATTTTTCAAATGCActgaaaaaattcaaactggTTTTTTTAGGTG
AACAGAGTGtTGGGAAGACATCACTCATCACACGATTTATGTATGATAGT
TTTGACAGTACATACCAGgcAACCATAGGCATAGATTTCCTTTCAAAGAC
CATGTACTTGGAGGATCGAACGGTTCGCTTGCAAATTTGGGACACAGCAG
GGCAAGAGAGATTTAGAAGTTTGATTCCAAGTTATATCAGAGATTCTTCT
GCTGCAGTTGTTGTCTATGATATTTCAAGTACAAATTCCTTTGCTCAAGT
AGATCGTTGGATAGAAGATGTCCGTGCAGAGAGAGGCCAAGATGTTGTTA
TAATGTTGGTTGGTAACAAAACAGATTTAACAGATAAAAGACGCGTTTCC
ATGGAGCAAGGGGAAAGAAGAGCTAAAGAATTAGGAGTTTTATTTATTGA
GAGTAGTGCAAAGACAGGTCATAACGTGAAACAGCTATTCAGACGGGTTG
CAGCAGCTTTACCAGGCATTGACAgtaaagaagatgaaaaaccAAACAAC
ATTAACCAAGTCATTCACCCAAAGATTGATGATGAGCCGCAAAGCTCATG
TGGTTGCTGAatgggTACTGATTTTTCAAATGCActgaaaaaattcaaac
tggTTTTTTTAGGTGAACAGAGTGtTGGGAAGACATCACTCATCACACGA
TTTATGTATGATAGTTTTGACAGTACATACCAGgcAACCATAGGCATAGA
TTTCCTTTCAAAGACCATGTACTTGGAGGATCGAACGGTTCGCTTGCAAA
TTTGGGACACAGCAGGGCAAGAGAGATTTAGAAGTTTGATTCCAAGTTAT
ATCAGAGATTCTTCTGCTGCAGTTGTTGTCTATGATATTTCAAGTACAAA
TTCCTTTGCTCAAGTAGATCGTTGGATAGAAGATGTCCGTGCAGAGAGAG
GCCAAGATGTTGTTATAATGTTGGTTGGTAACAAAACAGATTTAACAGAT
AAAAGACGCGTTTCCATGGAGCAAGGGGAAAGAAGAGCTAAAGAATTAGG
AGTTTTATTTATTGAGAGTAGTGCAAAGACAGGTCATAACGTGAAACAGC
TATTCAGACGGGTTGCAGCAGCTTTACCAGGCATTGACAgtaaagaagat
gaaaaaccAAACAACATTAACCAAGTCATTCACCCAAAGATTGATGATGA
GCCGCAAAGCTCATGTGGTTGCTGAatgggTACTGATTTTTCAAATGCAc
tgaaaaaattcaaactggTTTTTTTAGGTGAACAGAGTGtTGGGAAGACA
TCACTCATCACACGATTTATGTATGATAGTTTTGACAGTACATACCAGgc
AACCATAGGCATAGATTTCCTTTCAAAGACCATGTACTTGGAGGATCGAA
CGGTTCGCTTGCAAATTTGGGACACAGCAGGGCAAGAGAGATTTAGAAGT
TTGATTCCAAGTTATATCAGAGATTCTTCTGCTGCAGTTGTTGTCTATGA
TATTTCAAGTACAAATTCCTTTGCTCAAGTAGATCGTTGGATAGAAGATG
TCCGTGCAGAGAGAGGCCAAGATGTTGTTATAATGTTGGTTGGTAACAAA
ACAGATTTAACAGATAAAAGACGCGTTTCCATGGAGCAAGGGGAAAGAAG
AGCTAAAGAATTAGGAGTTTTATTTATTGAGAGTAGTGCAAAGACAGGTC
ATAACGTGAAACAGCTATTCAGACGGGTTGCAGCAGCTTTACCAGGCATT
GACAgtaaagaagatgaaaaaccAAACAACATTAACCAAGTCATTCACCC
AAAGATTGATGATGAGCCGCAAAGCTCATGTGGTTGCTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005235	XLOC_005235	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009344-protein	TCONS_00009344-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000093	supercontig	sc0000093:82669..85538 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73668	3.76532	1.22225	1.42574	28.4151	21.9452	12.3572	13.3427	12.3154	10.7693	10.9787	9.19404	12.3291	11.0833	13.2024	12.5996	21.4591	20.1261	7.10579	9.14452	15.1338	15.4488	21.065	19.8436	10.6093	12.333	11.5853	8.77948	29.1242	28.8748

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Blast

[Close]

BLAST of TCONS_00009344 vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 4.345e-104
Identity = 151/203 (74.38%), Postives = 175/203 (86.21%), Query Frame = 1

Query:  571 GTDFSNALKKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTVRLQIWDTAGQERFRSLIPSYIRDSSAAVVVYDISSTNSFAQVDRWIEDVRAERGQDVVIMLVGNKTDLTDKRRVSMEQGERRAKELGVLFIESSAKTGHNVKQLFRRVAAALPGIDSKEDEKPNNINQVIHPKIDDEPQSSCGC 1179
            G DF N L+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDRTVRLQ+WDTAGQERFRSLIPSYIRDS+ AVVVYDI++ NSF Q  +WI+DVR ERG DV+IMLVGNKTDL DKR+VS+E+GER+AKEL V+FIE+SAK G+NVKQLFRRVAAALPG++S +D    ++  +   K  ++P S  GC
Sbjct:    4 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGC 206

The following BLAST results are available for this feature:

BLAST of TCONS_00009344 vs. Swiss-Prot (Human)

BLAST of TCONS_00009344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAB6A	4.345e-104	74.38	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6...	[more]

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TCONS_00009344 (transcript) - C. hemisphaerica