TCONS_00009344-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009344-protein
Unique NameTCONS_00009344-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009344-protein ID=TCONS_00009344-protein|Name=TCONS_00009344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MGTDFSNALKKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLS
KTMYLEDRTVRLQIWDTAGQERFRSLIPSYIRDSSAAVVVYDISSTNSFA
QVDRWIEDVRAERGQDVVIMLVGNKTDLTDKRRVSMEQGERRAKELGVLF
IESSAKTGHNVKQLFRRVAAALPGIDSKEDEKPNNINQVIHPKIDDEPQS
SCGC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005235XLOC_005235Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009344TCONS_00009344Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 35..51
score: 33.87
coord: 150..172
score: 37.68
coord: 12..33
score: 42.78
coord: 53..75
score: 49.9
coord: 115..128
score: 53.75
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 12..175
e-value: 3.8E-83
score: 292.2
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 14..174
e-value: 3.3E-12
score: 36.6
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 17..199
e-value: 6.4E-5
score: 20.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 9..175
e-value: 3.3E-32
score: 123.0
NoneNo IPR availableGENE3D3.30.70.1390coord: 10..75
e-value: 3.4E-28
score: 96.9
NoneNo IPR availableGENE3D3.40.50.300coord: 76..172
e-value: 1.6E-36
score: 123.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..204
NoneNo IPR availablePROSITEPS51419RABcoord: 4..204
score: 32.203
NoneNo IPR availableCDDcd01861Rab6coord: 12..172
e-value: 2.84283E-108
score: 309.553
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..167
e-value: 7.0E-29
score: 98.7
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 13..171
e-value: 2.7E-58
score: 196.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..184

Blast
[Close]
BLAST of TCONS_00009344-protein vs. Swiss-Prot (Human)
Match: RAB6A (Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3)

HSP 1 Score: 318.161 bits (814), Expect = 5.935e-112
Identity = 151/203 (74.38%), Postives = 175/203 (86.21%), Query Frame = 0 
Query:    2 GTDFSNALKKFKLVFLGEQSVGKTSLITRFMYDSFDSTYQATIGIDFLSKTMYLEDRTVRLQIWDTAGQERFRSLIPSYIRDSSAAVVVYDISSTNSFAQVDRWIEDVRAERGQDVVIMLVGNKTDLTDKRRVSMEQGERRAKELGVLFIESSAKTGHNVKQLFRRVAAALPGIDSKEDEKPNNINQVIHPKIDDEPQSSCGC 204
            G DF N L+KFKLVFLGEQSVGKTSLITRFMYDSFD+TYQATIGIDFLSKTMYLEDRTVRLQ+WDTAGQERFRSLIPSYIRDS+ AVVVYDI++ NSF Q  +WI+DVR ERG DV+IMLVGNKTDL DKR+VS+E+GER+AKEL V+FIE+SAK G+NVKQLFRRVAAALPG++S +D    ++  +   K  ++P S  GC
Sbjct:    4 GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGC 206
The following BLAST results are available for this feature:
BLAST of TCONS_00009344-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB6A5.935e-11274.38Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6... [more]
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