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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009084 ID=TCONS_00009084|Name=TCONS_00009084|organism=Clytia hemisphaerica|type=transcript|length=1014bp TAAACCGCGAGGCTCGACAGACAATAACAGTCTTACTACAACACAAAAAc aactcgaaaaattatcgaCAACGCTTTCGGTTGCCGGTAAAATCAACACG CTCAACAAAAATGAAGTATCTCCTACGGTACAAACAACAGACAAGAGACA ACAAGATGAAAAAGATCGCGTCCGTTACGAGAAATGGAAGAAACGGCGTC AGTGGCAACGTAATAAGGCTTGGAAACGTGGACAACGTGAACGACAACGT AAGGAAAGGGAGAAACGGAGAGAACGCCAGCGACACGACGATGatgacga cgacgacgacgaggatgCTCACCGTCAAATAAAGAAgctcaaaatgaaac aaaacttgAGGAGTTTCAGAAGCAAGATTCTATGCTATCTACTGAAAAAT CTACATCTGATGTATTGGAAAAAACGGTTTCTGACACTTTAAGTGAGACG CTGACATCTTTGCAAATTCCTGCCAACAAAAGTAACAGCCCAAGCCAACA TTCTTTATCACACCCAGGGTCGTCATATTTACGTCATAGTGACTTCATCA TCGGTGACGTAatgaatgacgtcattgttgatATAAAGCAATTGTATCAA CAATGTGAACATTCTAAAGATGAAATTTGTTCAACGAATAAAGGCGCTAT TGAAAGTTCAGACAATGCCGTAAATGAGAATTCTGACCTCGTAAACAAAA ATTCCATTAAAAGTAGCGTAACAAGAGACTCAGAACTCTCAATCAAAGAC TTCATTACCGAGAATAAATGTAATGACGATCTTGAAGAACATATTAATAA TGGAgacttaaaaattgaaattgaagtcGCTTCAAATGTTGATGAGAAAC AAACAGCGGTTGTAATTACGGCTTAAAACTCGGCtgagagattttttttg agaCATCTCGTTTTGAAGTACTCTTAGGTCCCTAATAAACGAAGGGGGGA GGTTGGAACAAGCGAAGTGAGGGTTGGAAAAACTTCGAATTTGAAGAAAC GTCAGggtttggaa Run BLAST on NCBI transcript from alignment at sc0000090:86180..87990+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009084 ID=TCONS_00009084|Name=TCONS_00009084|organism=Clytia hemisphaerica|type=transcript|length=1811bp|location=Sequence derived from alignment at sc0000090:86180..87990+ (Clytia hemisphaerica) TAAACCGCGAGGCTCGACAGACAATAACAGTCTTACTACAACACAAAAAc
aactcgaaaaattatcgaCAACGCTTTCGGTTGCCGGTAAAATCAACACG
CTCAACAAAAATGAAGTATCTCCTACGGTACAAACAACAGACAAGAGACA
ACAAGATGAAAAAGATCGCGTCCGTTACGAGAAATGGAAGAAACGGCGTC
AGTGGCAACGTAATAAGGCTTGGAAACGTGGACAACGTGAACGACAACGT
AAGGAAAGGGAGAAACGGAGAGAACGCCAGCGACACGACGATGatgacga
cgacgacgacgaggatggtatatatttttatttttcattctttctCCAAC
CTATTGAAATAGTGATGAATCTCTTGAATTTGAAATGAAGCCAATTATTC
TTCATTTCacttaaaaattaaagaaaaattcataTTGTAATGATTAGTTC
AGTATTTTTTTTACTAGATTGCATTTTGTTCTGGGAATTTTCTTAAGCTG
AACACGAGGATATGCGTGCTCTTCATCttcaattctttaaaattaaatag
CAATATGATTGAGACATGCGGAATAAAATTATAATACTCCGTCACCACAG
GTTGATATTCAAAGAAACTTAAATTGTGGTTTGACTATCTATCTGCTTTC
TTTTACATCCATTGATTCTATGGATGTCACATTCGATCAAATATTCCAGA
GAATAATTTTCTACTtgggaatatatttttttctagaataGTCATTTTTT
GTATGTTTAAGATTACAAGATTACTTCTCCTATTAATTTTAAATACCGTC
TACCTTATCTTAGATCACAACAAACCAAACGTTATCTACATCACCTCTAC
AATAGCTGCCATCTTTATTGTTTGTTTCGTTGCCTTGGTGACCTGGCATT
TAAAAGAGACTGATCGATTATGTTTCAAACAAAACGAAAATCAACGCCGA
AACACGAACAGCAGTCAAAGAGCATTCGCTAGGAGATCCAAAATGAATTC
TTCGATTGCTAAACCATTTCCTAAACCTTATCCAGGAGAAAAGTTTACTA
ATGGTGTTTTATCCAAGAATTTCATTAATTCTGTAGTGATTGAAAACATT
TCTGTCTCTTACAGCTCACCGTCAAATAAAGAAgctcaaaatgaaacaaa
acttgAGGAGTTTCAGAAGCAAGATTCTATGCTATCTACTGAAAAATCTA
CATCTGATGTATTGGAAAAAACGGTTTCTGACACTTTAAGTGAGACGCTG
ACATCTTTGCAAATTCCTGCCAACAAAAGTAACAGCCCAAGCCAACATTC
TTTATCACACCCAGGGTCGTCATATTTACGTCATAGTGACTTCATCATCG
GTGACGTAatgaatgacgtcattgttgatATAAAGCAATTGTATCAACAA
TGTGAACATTCTAAAGATGAAATTTGTTCAACGAATAAAGGCGCTATTGA
AAGTTCAGACAATGCCGTAAATGAGAATTCTGACCTCGTAAACAAAAATT
CCATTAAAAGTAGCGTAACAAGAGACTCAGAACTCTCAATCAAAGACTTC
ATTACCGAGAATAAATGTAATGACGATCTTGAAGAACATATTAATAATGG
AgacttaaaaattgaaattgaagtcGCTTCAAATGTTGATGAGAAACAAA
CAGCGGTTGTAATTACGGCTTAAAACTCGGCtgagagattttttttgaga
CATCTCGTTTTGAAGTACTCTTAGGTCCCTAATAAACGAAGGGGGGAGGT
TGGAACAAGCGAAGTGAGGGTTGGAAAAACTTCGAATTTGAAGAAACGTC
AGggtttggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009084-exon-sc0000090-1491911889:86180..86496 | TCONS_00009084-exon-sc0000090-1491911889:86180..86496 | Clytia hemisphaerica | exon |
TCONS_00009084-exon-sc0000090-1510915933:86180..86496 | TCONS_00009084-exon-sc0000090-1510915933:86180..86496 | Clytia hemisphaerica | exon |
TCONS_00009084-exon-sc0000090-1575043694:86180..86496 | TCONS_00009084-exon-sc0000090-1575043694:86180..86496 | Clytia hemisphaerica | exon |
TCONS_00009084-exon-sc0000090-1491911889:87294..87990 | TCONS_00009084-exon-sc0000090-1491911889:87294..87990 | Clytia hemisphaerica | exon |
TCONS_00009084-exon-sc0000090-1510915933:87294..87990 | TCONS_00009084-exon-sc0000090-1510915933:87294..87990 | Clytia hemisphaerica | exon |
TCONS_00009084-exon-sc0000090-1575043694:87294..87990 | TCONS_00009084-exon-sc0000090-1575043694:87294..87990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000090 | supercontig | sc0000090:86180..87990 + |
Blast
The following BLAST results are available for this feature:
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