XLOC_005092 (gene) - C. hemisphaerica

Overview
NameXLOC_005092
Unique NameXLOC_005092
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000090:77975..87990+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005092 ID=XLOC_005092|Name=XLOC_005092|organism=Clytia hemisphaerica|type=gene|length=10016bp|location=Sequence derived from alignment at sc0000090:77975..87990+ (Clytia hemisphaerica)
ATAAAGAAGATGGCATTGAAATTCATATTTATCGTATTTTGTTTAGTAAT
ATGTTATGCATGTTCACAAAAAGGTAACACGACATAAATTTGCTTTTTAA
ACTGACTTGCTTGTTTAAGAGTGTTTTACAACACCTGCGGATATGTTGGA
TGTTGAATACTTTCATACTCTCTAGGGTATTAATTGCTCCCGAAGGGAGC
CTATGTTGTTTCACGAGGCCGTGCTGGGGATCGAGCtggcgaaaaattgt
tcaagaaaaaaaacggGACGATGTAACCTAGTGACTGCATCTACTAAAAG
ATTGCCGTGTGGTGAGCTTTTAAGCTAGCTCGACCGCGCGAACAGatatt
ttgcgtttttggctctccaaagtcatagcttggaatacaacaacaccgcg
tgaacagaaatttagcatctttagcgctccaaagtcatagcttggaatac
aacaacaaaaagcAACGAAGCAACTTGGGACCAGTTGGTTTCAGAAAGTA
GAAGGTATAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aagaaaatgcttttgagaagaaagtCATTCTAAATATTTCCTGAAGATTA
TTCCAAGACCCTgcctataaaacatgaaaagctTTGTAATTTAAGCTTTA
TAAGGTATCTATTAAAGGGGGGCATGTTTAGTGCAAGCTATGGCTGAGAA
AAATACTTTGCAATATCActgtatttctgacaaaaataaacacaacattt
cgccttttctgaatttcaatcaatcactgtcaaatgcctgtcatcgggag
catcatagcgaaagctacttgctagtcTAGTCTATTACGCCGACATTAAG
TATTTACGCCGTCTATTAAGGCGTagtggtgtagtggttatcgtgcttga
cttctgtccaggaggctcgagttcgatacccaccgtggcactacgattca
cttggcaagtgaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNATAtttcagacattgtggtgtgccgTGACACTcaggagg
ttctacacctgcgaggacatccgttctcccgtgtagttcgagtgtcgtgg
tatacatCATGGCTCtgcagctcgcatctgcagggttgcaatgtctgctt
gcgctgtgattcctactccatcgtgggtaggacccattccgatgcatcgg
agggcatatctatcaATTACGCCGACATGGTTTCTACATAGTGCAAAGAA
AGGCTTAAAGCGAATGGATTACCGTATAACTgaatatttatttaattttt
tcgattttatgaggggcgtttattcgagggggcgtttaaaagaagagggc
gtttattaaattatttgagtctaacgtcgaatatttagagcaaatctact
tttgttttagttttatACCAGGATTTCAGTGCAAATTTCTTTGGGTCGGC
GACTAAAATTGCATCAAAACTGATCTGGttacaaaaaaaactaaaatctt
cTTTAATCAAAACTTGTATCAAAGTATACTTGtatcaaaagtttctaata
aacgcccctcccctaGAGGGGGCGTTCATttgaagggggcgtttatttga
gggagGCCGTTtgttaaataattttcctttaaggaggggcgtttattcca
GGGGGcgttaaaaaaaaggggggTTTATTCGAAGTAGTACGGTATAGGAA
GCGAAACAATGAATGGATTATAGGAATCGAAACCTAGGATGACTTTTGAC
CCTTATTTAGCTTCTTGCTCAACTATCATTGATTTCCATTTTAAGTAGAT
GAACTTATTGATATTTAAAATCCTGATCGGAATTGTATCGGGGAATTCCG
TTGAACGGGAAATATCGGGAAACTAATTATCACGTGTGAGTGTATTCATA
TGATATTGCGCTCTCATGAGTCTTTTGATAGATCGTTGACAggattttca
ttaggtcaaacaAAACTATTGATAAACGATGTGGGTGTTGGGTGCTGATA
GCACGATACTGGCATACTTagcctgataacagctgttcataattttctta
cgcgcatggtaaacctctgaaggcgcttgaaaattatacatctgaggaaa
atagtcctcccgcgcaaaattttacaacaagaatcttgttgtgcacttga
aagtcaaaaactgatacggcgcccctattcataaacacaatcacgcaact
ttgttgtcatccccagtccttttagacgaacgcggtaattacgatttcga
gattgcatattcgtcagattgttatctttttacccatccctttagagctt
cagcgtggtgtgcagaaaacaatcacaatctgatctcaggttaggcATAC
TGGGATTATAAAAATCTAACATCTATTAGGGCTGCAAACTACTTTTAATT
ACCGTGAAAaagccccgggggggggtactaggtttgcgaggtgacgggta
tgtccgagccgaaaatcgaaaatcgaccctttgagagacaaaattttggt
gattttgggaccctttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ttttgaatttgtacccctttgagagacttttgaggaatgagaaaaggtac
ccttatggctcgcacatacccggcacccattttgcctaagtaaccccccc
ggggaaaaagcacaggtcgaaatcatatatcgacgctgtgccgacgaatc
gagattctattcagcacgcaatcaacgaagacaaaagtgaccatgacgac
catccaagatcttagatgaagttcaaagttgatatttctattcccgtcgt
tgaaaacacaactttttaaaaagagtcagtgatagagaatcataacataa
agtctgtctattatttcgattcaattaaagtgacatttccgtaattaata
gtttagtaattactgttatacatttggggatcatgtaaaagatttctttc
gaaagaaactcacttcaattacacttggaggtttctggggaattcgtaaa
tagtaaactgcatactgatacagtctgctagacattgataaggtaatatt
tgctcttaatctttgattctttctacagtgattagattgacacatgcgcg
atagaatttatattattggtcttcagaggttaatatattctttgaaaact
taacctctgatactcagggtaacttTTAATATATCCAGTTGAATGAGTAT
GAATATCATTACAAATAGTGGcgcaagtggctctgggtacgtGATTGGGG
TGAACTTTTTTAAGTCCTACTAACTTTGAATCTTTGCAGATCTTTGTGCA
aaacttaacttttttttcgatcaaactttcaaaaaccaGCTCTCTTTCcc
ttagacgatcctatcgtctacacattaTCACTAAAAAAGGAATAATTCAG
GAGGCGGGATGAATTTGAAAACGGAGTTTAGTTCGatgcggagatgttta
cagtgtatAGTGTAATGTATGTACAattttgttccaaactctaccgccac
tatcTTTtaccgtaaaccgccctgacgccctttCTCTGCGCATAtatatt
ttcccgcgtttacttaccctctaaacggacgatagcgTTTATCTTTCCCT
CGAAGTTTTAGGATGCAAGTATTCAGGTTTAAGATACTCTTGATACTATA
AAAGTGAAACTACTAATGATTCGTGTCACATTCTTCTGGTATTTCCAAAC
TTTCTTAAAAACCCAACAAAAACGACTACTTTTAAAGTGTTTTTTTGAGC
GAGATTCCTTGGCggatggcacacaacgttgtttcaacgttcatctaacg
ttatatggacgttgtgaacgttagataaacctTGAAACAACCCCAGCTTG
GTTGTCGGTCTATGTTTACGAAGACGTAAATCGCCTACCTGTGGTTCGCT
TCTCGGCTTCCTGTGGTTTTTATAATGTCGAGTTGAATTTGTGACCATcg
cttttaattatttttctgtTTACTGCGCATCTGAAATTTTTACATAATCA
GCGTCTTTCGGTTTTTCGAAAAGAagcaatagcgctccgcaacgcatacg
tcataattattacttttctctttttttgacatttgtacgagttgcaatcc
cacaattcaacaattcaatgcggctcaattaaagatacgtgcaagctgtt
atatatcttttgtcaaacgatgcaattaacgtgcaaaagagattaatgca
aaggttgatgggattggaactcgtacaaacacatcgagagtaatgatcat
gtcaaaaataaaatatatttttagattcagcgcggtgcgctattcAAGCG
ATTCTATCAAAAGGGAAAACTTAGATttaaatcaaagattttgatgaata
cacgtttttatataagaacatagggaGCCTTCGGATAAGTGTTCCGGTTT
CATATCAGAGCAATTTTCaactaaaaataagaaaaagcaCTTAAAAACTT
TCGTGCTCTTATTTAGCTCTCTGCTCAACCATCATTGATTTCCATTTTAA
GTAGATGAACACATTGATATTTCAGATCCTTATCGGAATCTTATCGGGGA
ATTCCGTTAAACGGGAAATATCGGGAAACTAATTATCACGTGTGAGTGTA
TTCAAATTATATTACGCCTTCCTTTGACGGATCGGtgattagattttcat
ttaggtCAAATAATACCTTTGATAAACGAAATCCTGAACAGAATTGTATC
GGGGAATTCCGTTAAACGGATTACTATCGGGAAACTAATTATCAGATGTA
TTTCTCGGAAGCTGAATTTGACAGCTTAGCGGTGTATATTGAATTTACGA
GAACTTTATAATGAAATAATGATTTGTTTAGCATTATTTTGATAGATTGT
GTTTTGTTCTGCAGCAACTTTGGGTCCAGTCTCTTTTTTGATTGACCCTT
GCATTGACTGGGTAGAATTATGCAATATTTTTCGCAAGTGAAAATTAGAG
CCAAAGCATAAGCAAATAACACCTACATATAAAAACCGTAATAATATTCG
TCCTGGGATCGAGTGGGGTTCTTTTTTTGCATCTTTTTCTGGTATTGGGT
TAAATTGCTTTTAAGAATCGAATCTTAAATCTGCCAAACGACAGGTTTGC
TCTCGAATAAACTCACAACAgcgtttttttttgttctttatgTTACAGTT
GCTGATAAACCGCGAGGCTCGACAGACAATAACAGTCTTACTACAACACA
AAAAcaactcgaaaaattatcgaCAACGCTTTCGGTTGCCGGTAAAATCA
ACACGCTCAACAAAAATGAAGTATCTCCTACGGTACAAACAACAGACAAG
AGACAACAAGATGAAAAAGATCGCGTCCGTTACGAGAAATGGAAGAAACG
GCGTCAGTGGCAACGTAATAAGGCTTGGAAACGTGGACAACGTGAACGAC
AACGTAAGGAAAGGGAGAAACGGAGAGAACGCCAGCGACACGACGATGat
gacgacgacgacgacgaggatggtatatatttttatttttcattctttct
CCAACCTATTGAAATAGTGATGAATCTCTTGAATTTGAAATGAAGCCAAT
TATTCTTCATTTCacttaaaaattaaagaaaaattcataTTGTAATGATT
AGTTCAGTATTTTTTTTACTAGATTGCATTTTGTTCTGGGAATTTTCTTA
AGCTGAACACGAGGATATGCGTGCTCTTCATCttcaattctttaaaatta
aatagCAATATGATTGAGACATGCGGAATAAAATTATAATACTCCGTCAC
CACAGGTTGATATTCAAAGAAACTTAAATTGTGGTTTGACTATCTATCTG
CTTTCTTTTACATCCATTGATTCTATGGATGTCACATTCGATCAAATATT
CCAGAGAATAATTTTCTACTtgggaatatatttttttctagaataGTCAT
TTTTTGTATGTTTAAGATTACAAGATTACTTCTCCTATTAATTTTAAATA
CCGTCTACCTTATCTTAGATCACAACAAACCAAACGTTATCTACATCACC
TCTACAATAGCTGCCATCTTTATTGTTTGTTTCGTTGCCTTGGTGACCTG
GCATTTAAAAGAGACTGATCGATTATGTTTCAAACAAAACGAAAATCAAC
GCCGAAACACGAACAGCAGTCAAAGAGCATTCGCTAGGAGATCCAAAATG
AATTCTTCGATTGCTAAACCATTTCCTAAACCTTATCCAGGAGAAAAGTT
TACTAATGGTGTTTTATCCAAGAATTTCATTAATTCTGTAGTGATTGAAA
ACATTTCTGTCTCTTACAGCTCACCGTCAAATAAAGAAgctcaaaatgaa
acaaaacttgAGGAGTTTCAGAAGCAAGATTCTATGCTATCTACTGAAAA
ATCTACATCTGATGTATTGGAAAAAACGGTTTCTGACACTTTAAGTGAGA
CGCTGACATCTTTGCAAATTCCTGCCAACAAAAGTAACAGCCCAAGCCAA
CATTCTTTATCACACCCAGGGTCGTCATATTTACGTCATAGTGACTTCAT
CATCGGTGACGTAatgaatgacgtcattgttgatATAAAGCAATTGTATC
AACAATGTGAACATTCTAAAGATGAAATTTGTTCAACGAATAAAGGCGCT
ATTGAAAGTTCAGACAATGCCGTAAATGAGAATTCTGACCTCGTAAACAA
AAATTCCATTAAAAGTAGCGTAACAAGAGACTCAGAACTCTCAATCAAAG
ACTTCATTACCGAGAATAAATGTAATGACGATCTTGAAGAACATATTAAT
AATGGAgacttaaaaattgaaattgaagtcGCTTCAAATGTTGATGAGAA
ACAAACAGCGGTTGTAATTACGGCTTAAAACTCGGCtgagagattttttt
tgagaCATCTCGTTTTGAAGTACTCTTAGGTCCCTAATAAACGAAGGGGG
GAGGTTGGAACAAGCGAAGTGAGGGTTGGAAAAACTTCGAATTTGAAGAA
ACGTCAGggtttggaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009083TCONS_00009083Clytia hemisphaericatranscript
TCONS_00009084TCONS_00009084Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009083-proteinTCONS_00009083-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:77975..87990 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19	1.31	0.71	0.43	1.45	0.83	0.51	0.65	3	4.12	1.27	2.32	7.12	6.82	21.37	29.8	1.89	2.09	0.13	0.29	0.09	0.12	0.51	0.74	1.17	1.4	0.25	0.19	0.33	0.35