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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009007 ID=TCONS_00009007|Name=TCONS_00009007|organism=Clytia hemisphaerica|type=transcript|length=3074bp
AAAGATTGGCATCGAACTTCATAGTTTTAATTACACTTACACAAAATGAT
GTCTCGACAAAAGACCAAAAGATTGATTAAAGGTAAAAATTTCATGTGAT
TTCAAAAGAATAATTCCtcaaaatgctgaatcagcaagtAAGGTATATCT
TCTAACGAGTTCGCTAAGGTCATTCTTTTTTCGTCCTATGTCTCTCTTAT
CCTTTGATGGTATAatgaaaatattacaaaaataaaaaaatacaatttta
attttcaaagggAAATCTTTGGCAAATTGAGGCTGATTTCTTAAATTGGA
AGTATGAatgtaaaaatcaaacaaaacgtTTAAATGAACAACGTATCTAA
ATATAGGAAACAGTATTATTTTTAGAAAGCTATCTGTTTGCTTTGATGAC
ATAAAAACGAATGATCAACATAGCGGCTTCTTACTCGTGACACTCAAAAT
CTCAGGAAGACATTTTCTGTCGGCgaaagttattattttaatcCTTCTTT
CTCTATGGAGAAACCATTATCTTGTAAAAGGATTGTCAATTCATATGATA
CATTcctattgaaaaagaaatcatcCTCAATAtccaaaaaatcttgaaat
ttgaaaattaaaaaaaattgtactctcaaaaaaaacaaagctaaaaaaat
tatatcttcAATTAGCTTTCTTtacaatcttttttaaaaatgtattatat
atttataaaaaacacaTCAAGTTTACCACCCTTTTTCTAGATACAAGATG
CATGGCAGTTCAAAAAATGGATTAGGGGACACCTAGACAGAAGACCCAGT
CACCTTTCAATGGATTCAATCACATATAAAACATGTGACTACCTTGTGAA
AAATAACTGATGGTGatggtaagatttttttttttttggggggggttCAA
CTTAATGACCATGCATATTTTGTGTCTTTTATAGGGCTGTGGTAAAGATA
GGGGTCAAGGAATTAGTCAACCAAAATAATAAAGCTAATTATTTTTAGTA
AAATTCTTCGTCCCCTTTCTATTGAGAGACTTGTTTTTAATGCACCAATG
ACTCATATAGTGTTGCCTAGTTTTTAATCCAATTTCAAGGGAATATTAAA
AATCTCTTTCATCGAGATGGTAGAATCAAATACAAGCCTCTCCATAGGAA
TGATGACATTTTCTACTTATACAATACTGTGCATATACTACATTAAAAAA
AACGgataaaaacttctttttttgtttaaattaaAGGAGGTAATAGTGTA
TTCACGTAGGTTGGGATTGGTTGGTCAAATAGGTGGTATTAATAACTATA
CAAGGCATTAAAGCTAAGTGGGCTAAATTGGATTTGAAtcttcaaacaaa
caaaaaaagaatagcTCTCTCTATATCGTACTCCTATCtctcaagaaaaa
aaaactcgaaaaaaatattgtgaAACCTTTTACTATCGATCTTTCCCATC
TCAATAAAAAAGGTGATCCTCTCTCTTTATCTCCACCTAGACGTTAGGGG
TTTAAGAGAAAATCGTAATGTTAGAAAAAGGAAGCCAGACCTTTGAAAGG
AAAATAAACCTCATAGCTATGATAGTCAATTCATCGAGtcgaaactttta
aatttttttcggaagGAACATTCGAGGTCAAACAGTTAAGAACGCAAGAC
cgttttaataaaaattttaaaaaataaattcaatgtTACTTTTGGTAATG
CATTCAGTTAACTTTAAAACCTTCTAAATATTCGTTTCGTAAAAATGTTC
ACAGTCAAAAGTTGGTTTTTGTATGACGTAAGATTGTTTGAACCGAGTAG
ACTGActctaaattttcaaatttgtatGGTATAGATATCCCTAGCGATTC
TGGCAGCCTGATCCTAGCATAACAAACAAGAATAAATTTGCAAAATAATT
AGTAAAATCTCACTTACTCCATTATCAATAAGAACAGAGTGTACGTAGAC
CTTCAAGATAAGCGAGGCattaaaaacagtcaaaaatgataacgtcaaaa
aattacatttacatttgctgttttaaaaccaaaataagAGACCAAAAAga
ccaagaaaatcaaaattattattGTAGAAAGAGCAGTAAAAGTTgtttaa
aatatgtttttaaaaaatcaccaccgaccaaaaaaaatgaaataaatttt
gtcgAACTTGGATTATCAAGTTATGATGTTGCTGGCATCAATCAAAAAAA
CCAAACCATTTTGCTCAATATCAAACAAATcgaagacaaaaaaaattgtg
tagAAAAACAACAGAGGGTGAACAAAGCAAAAAGTGCTTCCAGTATAgaa
atcaaccaaaatttaacttttcacCGTGTTGTTTTTTCTTGCATAATGTA
CACAAATAGACCCCTCTTCACCAATGCGATACGAAACTTCTGATGGATCA
ATCCACACAGTAAACTCTTTAGGTAGACTTTCGACAATCCAAACTGCATC
GCAATTTTTTGCCGTTTTTTCGATCAGTGATTCGCTACCATTTTGATTAA
TACGTAAACATCTGAATGCGCTTCCTTTCATTGGTCTGTCTGGATACCAA
TGACCAGTATACATTTCTATGATGGCTTTGATTAATCTTTCTTTGAATGA
TTGCAAACCGTGTGTATTAGTTTTCTTCAAAGTAGAGTTCTGTACGAAAC
GTAAGATTAAACTAACACCAGCCTCGACTTCATGTTCCATACTATTGGGA
TCGTATGGTGTGGTATTTTCTTTGTTATTACTCGACAGTCTGTTGTTGTT
AGGCGTCGAGTTGGCGTTGCCGGGTGGCTTTTGGCGTTTCTTATTTTTCA
TCTCTGATGTTGTTGGTATAATAGTCTTTCTTGCAATTTGAATATTTGGT
GTCATGAtttgtttttttcgatttttttgtgTTCAAGTCACTTTGTTTTG
AGTTTTTCTACTACTTTctctttacaatttttttgagttttttttatttc
tggaaaataaaagaaaatcagaaaatatagaATTACATATATTGATAACA
ATGAACATAATCAGATGAGTAAGTCACCACTATCAGTTATAAACCTTGTG
GGTATATCATATGATTTCTCtaca Run BLAST on NCBI transcript from alignment at sc0000089:383429..390352+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009007 ID=TCONS_00009007|Name=TCONS_00009007|organism=Clytia hemisphaerica|type=transcript|length=6924bp|location=Sequence derived from alignment at sc0000089:383429..390352+ (Clytia hemisphaerica)
AAAGATTGGCATCGAACTTCATAGGTATGAACTCTGTCTTcagatcattt
tattttatttttatctagGCTCGTCTAGGCTGCAGCCATCCGTAAAATTT
TTATGCTGTGATGTTGTGAATCGGGCTTGCAAGACTTCTTAAAGCCAGAT
TTGAGTAAAAAACGACAAGTTTGGGTTGATAagtcttaagggctctgacc
atagtgaatttttaatatttgccacttacaaaatataaagttctacttgg
tgtagcccacaaaactgtggcatgttatacatattctgtttggccaatta
tccgtgagtctgaaaatttaagaatcgcaatgaaaaaatttgataaagaa
gaaaatgaactttgaagagcttattttcggcgaagaaaaaacattctgaa
attttttttgcggtagatggtgtatcttttatcgaactaaaataattttt
cggaaaatttttctaaaagcttacttgcttcaaaatcttgaaaatagtgc
tttttgaccaatttacCATCccatttcatagaaaaacagccataactttt
gatgcattaatttagaaaattttccgaaaaatttaaaacagttcaattct
ttgcggacagtttgaaaaaacttcgaaaccattaaaacttagcacttttt
ataaaagcaggtgatgcaacatattttaacgtctttttaaagttcgtaac
gttgaaaaacaatttataaaggcaattctttgttaatagtgttaaagaac
ctaaaacataacttttatgttcaaatactaaaatcaattttccgactatg
gtcagagcccttaagttagTTCTTTTCTGCACGCTGCATTTTCAAGAAGT
gccttaaaaatcttttaaacaacCTGCAGCTTTGATCTTGATTGCTAAGC
GCCATCTTCCTCAATCCAGTCGGTCAGGATTTaaaaccctttaactgccg
atgtcggcatatgccgacatgagcattttcgatttctttgccgatgtcgg
gatttgccgacatgggcactttccatttctttgccgatgtcgggatttgc
cgacatgggcactttccatttctttgccgatgtcgggatttgccgacatg
ggcactttCCATTCCTTTGCCGCAAAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcatatgc
cgacatctggcaaataggtcgaaccttctttttttcccgtggcaaatagg
tcgaaccttaaaaaatacgaacggcagttaaagggttaaaacaAAGTACA
GTATCTCTGTGATCAAAAAGAAGGATAAATCAACATTTATCTATCCTGAG
TGTAGTGGGGAGTTCAAACTGTTTCAGCATTCGACCCAATTCAACAAGGA
TCCCAAAGCGGGCACTCGAattgtgatacaggggtgttttttATACAGAG
CGAGTCGGTAAGCGCAAGCATACAATGCATGAAGTGAGAAATAATTCTGC
TTTTACTTTGTAAGTTTCACGACATTGTATTTTCAACCTTTACTACGGGT
GATAACTTCTTTCTCGATCTCAACATCACATTATTTCGGCTCGTCGAATA
TTCTTGTTGTTGTCTCCTTTTTAATTATAAGTATACTTTTTCTGAATATT
GATTCAGTACGCACTTCCTCGTCGATTCTTTCATCGCTTTGATCATCGAA
AGATGGAAATTAGTTTTACCTCAAGAACTACTATTTTAAGATGCACACAA
TTTTCATAAACATGGTCTTTTCAATTATCATACACATGCTAAATCGTTAC
TTTAAATGTTTAAATGAGAAAACTTGTGCTGAGAAAGACATTTATAGAAG
GTTCTATGAACTAAAAATAGTTACTCCAAATTAGcatggtttgaaatttt
ttctaaacaacaaaacttatttaatttttatgtttttcactTAAGTTTGA
GGATTGCTCCACAACAAGTTCTATTTTTATAAAGATTGCTTCACAACTGA
ATCAAAATCTCTTtcgaaaagtctttttgatatAATATGTTATTTTCAAC
ACTAATCTTTTGTTGTAATATGAGCTTTGAAGACTCTTGAGTAAACTTAT
CCAATTATAGTAAATATATAGCAAAGATTGCTCCACAAATGAGTTTATAA
ACAGCAACCACAAGTAGTTAAATAGCGCTCAGAACATAGTCTCGAAAATT
ATTGTAAAGAGTTATCATCAGTATAGGTGTAATCCTTACCTGTAGATAAC
TTTATAGTTATCTATAGTAAGGAGAATGATGATCATGGGGCTGAATGACT
TGTATGAGTTAGAAGCTTCGGACCTTGGTGCTGCAACACACCTTGTGTTC
CCATGACTGACCTCGCCAACTGATACATCGCCATAAGACAAAATTTAAAC
TCTGATTTATAGACCAAACTGTACCCTGCATATTACAGGAACGTCTTCAA
AGAATATTCGAATTTTAATCAAGCTGCGATATTGAGATTCAGCATACAGA
TGTTAGATACACATGAAATATGTGAGTTTAATGTACTTCATAGATATGGA
TAATTCTTAAATTGGCTAGGTCAACATTTCTTATGAGATAGGAATTTCGA
AATAGATACGAGCCACACACGTAAGAGGACGATCTAAGAAACACTTACAT
ACAGTACATACAATCGATTGTATTTTTAAAACAGAACAGTTTCATTCAAA
AATAGATTTAAGTTGTGTCAATTTAATCATAAGAAACCGACCACGCTATA
TCTCGTAGGATGTAtgaattcatttttcaaaaacagacGAACGACTTCCT
TCAACAAAAttcattacatgttttttatccTGTTAACAGAATGTTAGTTG
GTCAAATTACTTCTTACTTCTTCTCTTTCCTGTTGTAAttaatttacagt
aatatatttctcaggtctatcgacctctatgaaataatcatgcttaacat
tttacaattttacagttgTAAGCGCACGGTGGGCCTCTTAACCAGTCGTC
TTTAATTGCTTGATATCTGGCTATGTTGACGtttcgttgaaaaaacgttg
agGTTGAGGACAATAAGTAGTCTCCTGTAATAAAGTAACACTAAATTACC
CAAACATCTTTATTTCGGACACATAGGCTCAAGAATATGAAATTAAAGAA
TCATGATTTTTTCCtctttaaaatttattaaaattttatcaCGTTTTAAT
TGACTTTTAAGCCCGTCTCATCTTTTAAGATCTAACTATAATGTCTTTAt
gtacaaattttcaaatatatacGAAGTAGTAGATTTATTATTAAATTGTA
AAACTACCGCTGACTGTTGCCATTTCAAAGGTTCTATTCACAAAATTATT
GTCAACAGAATAATTGAGGGGGTGAGATAATAATAATATCGTATTTACAA
AttataagtgaaaaaaaattctaacgtATATACAATGGAAAAggatcgat
attttttatatgaaaaaataaaataaaaggtttcaaatatttttttcttg
actttttatTCTTATGGGAGAGATGGAGGGTTTAGAAAGACTTTTCTCTG
TTATGCCTATAGACCTTTGATCTTGCATTTATAGTCTATTCAATGTTGTA
ATGCTACAGTATTCTTCTTTGCAGTTTTAATTACACTTACACAAAATGAT
GTCTCGACAAAAGACCAAAAGATTGATTAAAGGTAAAAATTTCATGTGAT
TTCAAAAGAATAATTCCtcaaaatgctgaatcagcaagtAAGGTATATCT
TCTAACGAGTTCGCTAAGGTCATTCTTTTTTCGTCCTATGTCTCTCTTAT
CCTTTGATGGTATAatgaaaatattacaaaaataaaaaaatacaatttta
attttcaaagggAAATCTTTGGCAAATTGAGGCTGATTTCTTAAATTGGA
AGTATGAatgtaaaaatcaaacaaaacgtTTAAATGAACAACGTATCTAA
ATATAGGAAACAGTATTATTTTTAGAAAGCTATCTGTTTGCTTTGATGAC
ATAAAAACGAATGATCAACATAGCGGCTTCTTACTCGTGACACTCAAAAT
CTCAGGAAGACATTTTCTGTCGGCgaaagttattattttaatcCTTCTTT
CTCTATGGAGAAACCATTATCTTGTAAAAGGATTGTCAATTCATATGATA
CATTcctattgaaaaagaaatcatcCTCAATAtccaaaaaatcttgaaat
ttgaaaattaaaaaaaattgtactctcaaaaaaaacaaagctaaaaaaat
tatatcttcAATTAGCTTTCTTtacaatcttttttaaaaatgtattatat
atttataaaaaacacaTCAAGTTTACCACCCTTTTTCTAGATACAAGATG
CATGGCAGTTCAAAAAATGGATTAGGGGACACCTAGACAGAAGACCCAGT
CACCTTTCAATGGATTCAATCACATATAAAACATGTGACTACCTTGTGAA
AAATAACTGATGGTGatggtaagatttttttttttttggggggggttCAA
CTTAATGACCATGCATATTTTGTGTCTTTTATAGGGCTGTGGTAAAGATA
GGGGTCAAGGAATTAGTCAACCAAAATAATAAAGCTAATTATTTTTAGTA
AAATTCTTCGTCCCCTTTCTATTGAGAGACTTGTTTTTAATGCACCAATG
ACTCATATAGTGTTGCCTAGTTTTTAATCCAATTTCAAGGGAATATTAAA
AATCTCTTTCATCGAGATGGTAGAATCAAATACAAGCCTCTCCATAGGAA
TGATGACATTTTCTACTTATACAATACTGTGCATATACTACATTAAAAAA
AACGgataaaaacttctttttttgtttaaattaaAGGAGGTAATAGTGTA
TTCACGTAGGTTGGGATTGGTTGGTCAAATAGGTGGTATTAATAACTATA
CAAGGCATTAAAGCTAAGTGGGCTAAATTGGATTTGAAtcttcaaacaaa
caaaaaaagaatagcTCTCTCTATATCGTACTCCTATCtctcaagaaaaa
aaaactcgaaaaaaatattgtgaAACCTTTTACTATCGATCTTTCCCATC
TCAATAAAAAAGGTGATCCTCTCTCTTTATCTCCACCTAGACGTTAGGGG
TTTAAGAGAAAATCGTAATGTTAGAAAAAGGAAGCCAGACCTTTGAAAGG
AAAATAAACCTCATAGCTATGATAGTCAATTCATCGAGtcgaaactttta
aatttttttcggaagGAACATTCGAGGTCAAACAGTTAAGAACGCAAGAC
cgttttaataaaaattttaaaaaataaattcaatgtTACTTTTGGTAATG
CATTCAGTTAACTTTAAAACCTTCTAAATATTCGTTTCGTAAAAATGTTC
ACAGTCAAAAGTTGGTTTTTGTATGACGTAAGATTGTTTGAACCGAGTAG
ACTGActctaaattttcaaatttgtatGGTATAGATATCCCTAGCGATTC
TGGCAGCCTGATCCTAGCATAACAAACAAGAATAAATTTGCAAAATAATT
AGTAAAATCTCACTTACTCCATTATCAATAAGAACAGAGTGTACGTAGAC
CTTCAAGATAAGCGAGGCattaaaaacagtcaaaaatgataacgtcaaaa
aattacatttacatttgctgttttaaaaccaaaataagAGACCAAAAAga
ccaagaaaatcaaaattattattGTAGAAAGAGCAGTAAAAGTTgtttaa
aatatgtttttaaaaaatcaccaccgaccaaaaaaaatgaaataaatttt
gtcgAACTTGGATTATCAAGTTATGATGTTGCTGGCATCAATCAAAAAAA
CCAAACCATTTTGCTCAATATCAAACAAATcgaagacaaaaaaaattgtg
tagAAAAACAACAGAGGGTGAACAAAGCAAAAAGTGCTTCCAGTATAgaa
atcaaccaaaatttaacttttcacCGTGTTGTTTTTTCTTGCATAATGTA
CACAAATAGACCCCTCTTCACCAATGCGATACGAAACTTCTGATGGATCA
ATCCACACAGTAAACTCTTTAGGTAGACTTTCGACAATCCAAACTGCATC
GCAATTTTTTGCCGTTTTTTCGATCAGTGATTCGCTACCATTTTGATTAA
TACGTAAACATCTGAATGCGCTTCCTTTCATTGGTCTGTCTGGATACCAA
TGACCAGTATACATTTCTATGATGGCTTTGATTAATCTTTCTTTGAATGA
TTGCAAACCGTGTGTATTAGTTTTCTTCAAAGTAGAGTTCTGTACGAAAC
GTAAGATTAAACTAACACCAGCCTCGACTTCATGTTCCATACTATTGGGA
TCGTATGGTGTGGTATTTTCTTTGTTATTACTCGACAGTCTGTTGTTGTT
AGGCGTCGAGTTGGCGTTGCCGGGTGGCTTTTGGCGTTTCTTATTTTTCA
TCTCTGATGTTGTTGGTATAATAGTCTTTCTTGCAATTTGAATATTTGGT
GTCATGAtttgtttttttcgatttttttgtgTTCAAGTCACTTTGTTTTG
AGTTTTTCTACTACTTTctctttacaatttttttgagttttttttatttc
tggaaaataaaagaaaatcagaaaatatagaATTACATATATTGATAACA
ATGAACATAATCAGATGAGTAAGTCACCACTATCAGTTATAAACCTTGTG
GGTATATCATATGATTTCTCtaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009007-exon-sc0000089-1491911889:383429..383452 | TCONS_00009007-exon-sc0000089-1491911889:383429..383452 | Clytia hemisphaerica | exon |
| TCONS_00009007-exon-sc0000089-1510915933:383429..383452 | TCONS_00009007-exon-sc0000089-1510915933:383429..383452 | Clytia hemisphaerica | exon |
| TCONS_00009007-exon-sc0000089-1575043694:383429..383452 | TCONS_00009007-exon-sc0000089-1575043694:383429..383452 | Clytia hemisphaerica | exon |
| TCONS_00009007-exon-sc0000089-1491911889:387303..390352 | TCONS_00009007-exon-sc0000089-1491911889:387303..390352 | Clytia hemisphaerica | exon |
| TCONS_00009007-exon-sc0000089-1510915933:387303..390352 | TCONS_00009007-exon-sc0000089-1510915933:387303..390352 | Clytia hemisphaerica | exon |
| TCONS_00009007-exon-sc0000089-1575043694:387303..390352 | TCONS_00009007-exon-sc0000089-1575043694:387303..390352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:383429..390352 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002087 | Anti_prolifrtn |
Blast
BLAST of TCONS_00009007 vs. Swiss-Prot (Human)
Match: BTG1 (Protein BTG1 OS=Homo sapiens GN=BTG1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.978e-23 Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -1
Query: 2343 SMEHEVEAGVSLILRFVQNSTLKKTNTHGLQSFKERLIKAIIEMYTGHWYPDRPMKGSAFRCLRINQNGSESLIEKTAK--NCDAVWIVESLPKEFTVWIDPSEVSYRIGEEGSICVHY 2693
+M E+ A VS I +F++ L T+ LQ+F + L + + E Y HW+P++P KGS +RC+RIN + LI + A+ + + LP E T+W+DP EVSYRIGE+GSICV Y
Sbjct: 10 TMIGEIAAAVSFISKFLRTKGL--TSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRINHK-MDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLY 125
The following BLAST results are available for this feature:
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