XLOC_005040 (gene) - C. hemisphaerica

Overview
NameXLOC_005040
Unique NameXLOC_005040
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000089:383429..390352+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005040 ID=XLOC_005040|Name=XLOC_005040|organism=Clytia hemisphaerica|type=gene|length=6924bp|location=Sequence derived from alignment at sc0000089:383429..390352+ (Clytia hemisphaerica)
AAAGATTGGCATCGAACTTCATAGGTATGAACTCTGTCTTcagatcattt
tattttatttttatctagGCTCGTCTAGGCTGCAGCCATCCGTAAAATTT
TTATGCTGTGATGTTGTGAATCGGGCTTGCAAGACTTCTTAAAGCCAGAT
TTGAGTAAAAAACGACAAGTTTGGGTTGATAagtcttaagggctctgacc
atagtgaatttttaatatttgccacttacaaaatataaagttctacttgg
tgtagcccacaaaactgtggcatgttatacatattctgtttggccaatta
tccgtgagtctgaaaatttaagaatcgcaatgaaaaaatttgataaagaa
gaaaatgaactttgaagagcttattttcggcgaagaaaaaacattctgaa
attttttttgcggtagatggtgtatcttttatcgaactaaaataattttt
cggaaaatttttctaaaagcttacttgcttcaaaatcttgaaaatagtgc
tttttgaccaatttacCATCccatttcatagaaaaacagccataactttt
gatgcattaatttagaaaattttccgaaaaatttaaaacagttcaattct
ttgcggacagtttgaaaaaacttcgaaaccattaaaacttagcacttttt
ataaaagcaggtgatgcaacatattttaacgtctttttaaagttcgtaac
gttgaaaaacaatttataaaggcaattctttgttaatagtgttaaagaac
ctaaaacataacttttatgttcaaatactaaaatcaattttccgactatg
gtcagagcccttaagttagTTCTTTTCTGCACGCTGCATTTTCAAGAAGT
gccttaaaaatcttttaaacaacCTGCAGCTTTGATCTTGATTGCTAAGC
GCCATCTTCCTCAATCCAGTCGGTCAGGATTTaaaaccctttaactgccg
atgtcggcatatgccgacatgagcattttcgatttctttgccgatgtcgg
gatttgccgacatgggcactttccatttctttgccgatgtcgggatttgc
cgacatgggcactttccatttctttgccgatgtcgggatttgccgacatg
ggcactttCCATTCCTTTGCCGCAAAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcatatgc
cgacatctggcaaataggtcgaaccttctttttttcccgtggcaaatagg
tcgaaccttaaaaaatacgaacggcagttaaagggttaaaacaAAGTACA
GTATCTCTGTGATCAAAAAGAAGGATAAATCAACATTTATCTATCCTGAG
TGTAGTGGGGAGTTCAAACTGTTTCAGCATTCGACCCAATTCAACAAGGA
TCCCAAAGCGGGCACTCGAattgtgatacaggggtgttttttATACAGAG
CGAGTCGGTAAGCGCAAGCATACAATGCATGAAGTGAGAAATAATTCTGC
TTTTACTTTGTAAGTTTCACGACATTGTATTTTCAACCTTTACTACGGGT
GATAACTTCTTTCTCGATCTCAACATCACATTATTTCGGCTCGTCGAATA
TTCTTGTTGTTGTCTCCTTTTTAATTATAAGTATACTTTTTCTGAATATT
GATTCAGTACGCACTTCCTCGTCGATTCTTTCATCGCTTTGATCATCGAA
AGATGGAAATTAGTTTTACCTCAAGAACTACTATTTTAAGATGCACACAA
TTTTCATAAACATGGTCTTTTCAATTATCATACACATGCTAAATCGTTAC
TTTAAATGTTTAAATGAGAAAACTTGTGCTGAGAAAGACATTTATAGAAG
GTTCTATGAACTAAAAATAGTTACTCCAAATTAGcatggtttgaaatttt
ttctaaacaacaaaacttatttaatttttatgtttttcactTAAGTTTGA
GGATTGCTCCACAACAAGTTCTATTTTTATAAAGATTGCTTCACAACTGA
ATCAAAATCTCTTtcgaaaagtctttttgatatAATATGTTATTTTCAAC
ACTAATCTTTTGTTGTAATATGAGCTTTGAAGACTCTTGAGTAAACTTAT
CCAATTATAGTAAATATATAGCAAAGATTGCTCCACAAATGAGTTTATAA
ACAGCAACCACAAGTAGTTAAATAGCGCTCAGAACATAGTCTCGAAAATT
ATTGTAAAGAGTTATCATCAGTATAGGTGTAATCCTTACCTGTAGATAAC
TTTATAGTTATCTATAGTAAGGAGAATGATGATCATGGGGCTGAATGACT
TGTATGAGTTAGAAGCTTCGGACCTTGGTGCTGCAACACACCTTGTGTTC
CCATGACTGACCTCGCCAACTGATACATCGCCATAAGACAAAATTTAAAC
TCTGATTTATAGACCAAACTGTACCCTGCATATTACAGGAACGTCTTCAA
AGAATATTCGAATTTTAATCAAGCTGCGATATTGAGATTCAGCATACAGA
TGTTAGATACACATGAAATATGTGAGTTTAATGTACTTCATAGATATGGA
TAATTCTTAAATTGGCTAGGTCAACATTTCTTATGAGATAGGAATTTCGA
AATAGATACGAGCCACACACGTAAGAGGACGATCTAAGAAACACTTACAT
ACAGTACATACAATCGATTGTATTTTTAAAACAGAACAGTTTCATTCAAA
AATAGATTTAAGTTGTGTCAATTTAATCATAAGAAACCGACCACGCTATA
TCTCGTAGGATGTAtgaattcatttttcaaaaacagacGAACGACTTCCT
TCAACAAAAttcattacatgttttttatccTGTTAACAGAATGTTAGTTG
GTCAAATTACTTCTTACTTCTTCTCTTTCCTGTTGTAAttaatttacagt
aatatatttctcaggtctatcgacctctatgaaataatcatgcttaacat
tttacaattttacagttgTAAGCGCACGGTGGGCCTCTTAACCAGTCGTC
TTTAATTGCTTGATATCTGGCTATGTTGACGtttcgttgaaaaaacgttg
agGTTGAGGACAATAAGTAGTCTCCTGTAATAAAGTAACACTAAATTACC
CAAACATCTTTATTTCGGACACATAGGCTCAAGAATATGAAATTAAAGAA
TCATGATTTTTTCCtctttaaaatttattaaaattttatcaCGTTTTAAT
TGACTTTTAAGCCCGTCTCATCTTTTAAGATCTAACTATAATGTCTTTAt
gtacaaattttcaaatatatacGAAGTAGTAGATTTATTATTAAATTGTA
AAACTACCGCTGACTGTTGCCATTTCAAAGGTTCTATTCACAAAATTATT
GTCAACAGAATAATTGAGGGGGTGAGATAATAATAATATCGTATTTACAA
AttataagtgaaaaaaaattctaacgtATATACAATGGAAAAggatcgat
attttttatatgaaaaaataaaataaaaggtttcaaatatttttttcttg
actttttatTCTTATGGGAGAGATGGAGGGTTTAGAAAGACTTTTCTCTG
TTATGCCTATAGACCTTTGATCTTGCATTTATAGTCTATTCAATGTTGTA
ATGCTACAGTATTCTTCTTTGCAGTTTTAATTACACTTACACAAAATGAT
GTCTCGACAAAAGACCAAAAGATTGATTAAAGGTAAAAATTTCATGTGAT
TTCAAAAGAATAATTCCtcaaaatgctgaatcagcaagtAAGGTATATCT
TCTAACGAGTTCGCTAAGGTCATTCTTTTTTCGTCCTATGTCTCTCTTAT
CCTTTGATGGTATAatgaaaatattacaaaaataaaaaaatacaatttta
attttcaaagggAAATCTTTGGCAAATTGAGGCTGATTTCTTAAATTGGA
AGTATGAatgtaaaaatcaaacaaaacgtTTAAATGAACAACGTATCTAA
ATATAGGAAACAGTATTATTTTTAGAAAGCTATCTGTTTGCTTTGATGAC
ATAAAAACGAATGATCAACATAGCGGCTTCTTACTCGTGACACTCAAAAT
CTCAGGAAGACATTTTCTGTCGGCgaaagttattattttaatcCTTCTTT
CTCTATGGAGAAACCATTATCTTGTAAAAGGATTGTCAATTCATATGATA
CATTcctattgaaaaagaaatcatcCTCAATAtccaaaaaatcttgaaat
ttgaaaattaaaaaaaattgtactctcaaaaaaaacaaagctaaaaaaat
tatatcttcAATTAGCTTTCTTtacaatcttttttaaaaatgtattatat
atttataaaaaacacaTCAAGTTTACCACCCTTTTTCTAGATACAAGATG
CATGGCAGTTCAAAAAATGGATTAGGGGACACCTAGACAGAAGACCCAGT
CACCTTTCAATGGATTCAATCACATATAAAACATGTGACTACCTTGTGAA
AAATAACTGATGGTGatggtaagatttttttttttttggggggggttCAA
CTTAATGACCATGCATATTTTGTGTCTTTTATAGGGCTGTGGTAAAGATA
GGGGTCAAGGAATTAGTCAACCAAAATAATAAAGCTAATTATTTTTAGTA
AAATTCTTCGTCCCCTTTCTATTGAGAGACTTGTTTTTAATGCACCAATG
ACTCATATAGTGTTGCCTAGTTTTTAATCCAATTTCAAGGGAATATTAAA
AATCTCTTTCATCGAGATGGTAGAATCAAATACAAGCCTCTCCATAGGAA
TGATGACATTTTCTACTTATACAATACTGTGCATATACTACATTAAAAAA
AACGgataaaaacttctttttttgtttaaattaaAGGAGGTAATAGTGTA
TTCACGTAGGTTGGGATTGGTTGGTCAAATAGGTGGTATTAATAACTATA
CAAGGCATTAAAGCTAAGTGGGCTAAATTGGATTTGAAtcttcaaacaaa
caaaaaaagaatagcTCTCTCTATATCGTACTCCTATCtctcaagaaaaa
aaaactcgaaaaaaatattgtgaAACCTTTTACTATCGATCTTTCCCATC
TCAATAAAAAAGGTGATCCTCTCTCTTTATCTCCACCTAGACGTTAGGGG
TTTAAGAGAAAATCGTAATGTTAGAAAAAGGAAGCCAGACCTTTGAAAGG
AAAATAAACCTCATAGCTATGATAGTCAATTCATCGAGtcgaaactttta
aatttttttcggaagGAACATTCGAGGTCAAACAGTTAAGAACGCAAGAC
cgttttaataaaaattttaaaaaataaattcaatgtTACTTTTGGTAATG
CATTCAGTTAACTTTAAAACCTTCTAAATATTCGTTTCGTAAAAATGTTC
ACAGTCAAAAGTTGGTTTTTGTATGACGTAAGATTGTTTGAACCGAGTAG
ACTGActctaaattttcaaatttgtatGGTATAGATATCCCTAGCGATTC
TGGCAGCCTGATCCTAGCATAACAAACAAGAATAAATTTGCAAAATAATT
AGTAAAATCTCACTTACTCCATTATCAATAAGAACAGAGTGTACGTAGAC
CTTCAAGATAAGCGAGGCattaaaaacagtcaaaaatgataacgtcaaaa
aattacatttacatttgctgttttaaaaccaaaataagAGACCAAAAAga
ccaagaaaatcaaaattattattGTAGAAAGAGCAGTAAAAGTTgtttaa
aatatgtttttaaaaaatcaccaccgaccaaaaaaaatgaaataaatttt
gtcgAACTTGGATTATCAAGTTATGATGTTGCTGGCATCAATCAAAAAAA
CCAAACCATTTTGCTCAATATCAAACAAATcgaagacaaaaaaaattgtg
tagAAAAACAACAGAGGGTGAACAAAGCAAAAAGTGCTTCCAGTATAgaa
atcaaccaaaatttaacttttcacCGTGTTGTTTTTTCTTGCATAATGTA
CACAAATAGACCCCTCTTCACCAATGCGATACGAAACTTCTGATGGATCA
ATCCACACAGTAAACTCTTTAGGTAGACTTTCGACAATCCAAACTGCATC
GCAATTTTTTGCCGTTTTTTCGATCAGTGATTCGCTACCATTTTGATTAA
TACGTAAACATCTGAATGCGCTTCCTTTCATTGGTCTGTCTGGATACCAA
TGACCAGTATACATTTCTATGATGGCTTTGATTAATCTTTCTTTGAATGA
TTGCAAACCGTGTGTATTAGTTTTCTTCAAAGTAGAGTTCTGTACGAAAC
GTAAGATTAAACTAACACCAGCCTCGACTTCATGTTCCATACTATTGGGA
TCGTATGGTGTGGTATTTTCTTTGTTATTACTCGACAGTCTGTTGTTGTT
AGGCGTCGAGTTGGCGTTGCCGGGTGGCTTTTGGCGTTTCTTATTTTTCA
TCTCTGATGTTGTTGGTATAATAGTCTTTCTTGCAATTTGAATATTTGGT
GTCATGAtttgtttttttcgatttttttgtgTTCAAGTCACTTTGTTTTG
AGTTTTTCTACTACTTTctctttacaatttttttgagttttttttatttc
tggaaaataaaagaaaatcagaaaatatagaATTACATATATTGATAACA
ATGAACATAATCAGATGAGTAAGTCACCACTATCAGTTATAAACCTTGTG
GGTATATCATATGATTTCTCtaca
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009007TCONS_00009007Clytia hemisphaericatranscript
TCONS_00009008TCONS_00009008Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:383429..390352 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33	1.78	3.75	4.02	58.28	38.87	55.16	55.6	27.18	48.54	25.29	41.21	71.57	59.32	46.49	41.66	37.33	60.43	49.26	63.66	39.14	37.93	8.6	18.96	25.41	31.52	157.57	114.69	152.29	172.79