|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009008 ID=TCONS_00009008|Name=TCONS_00009008|organism=Clytia hemisphaerica|type=transcript|length=2862bp
GATTTTTTCCtctttaaaatttattaaaattttatcaCGTTTTAATTGAC
TTTTAAGCCCGTCTCATCTTTTAAGATCTAACTATAATGTCTTTAtgtac
aaattttcaaatatatacGAAGTAGTAGATTTATTATTAAATTGTAAAAC
TACCGCTGACTGTTGCCATTTCAAAGGTTCTATTCACAAAATTATTGTCA
ACAGAATAATTGAGGGGGTGAGATAATAATAATATCGTATTTACAAAtta
taagtgaaaaaaaattctaacgtATATACAATGGAAAAggatcgatattt
tttatatgaaaaaataaaataaaaggtttcaaatatttttttcttgactt
tttatTCTTATGGGAGAGATGGAGGGTTTAGAAAGACTTTTCTCTGTTAT
GCCTATAGACCTTTGATCTTGCATTTATAGTCTATTCAATGTTGTAATGC
TACAGTATTCTTCTTTGCAGTTTTAATTACACTTACACAAAATGATGTCT
CGACAAAAGACCAAAAGATTGATTAAAGATACAAGATGCATGGCAGTTCA
AAAAATGGATTAGGGGACACCTAGACAGAAGACCCAGTCACCTTTCAATG
GATTCAATCACATATAAAACATGTGACTACCTTGTGAAAAATAACTGATG
GTGatggtaagatttttttttttttggggggggttCAACTTAATGACCAT
GCATATTTTGTGTCTTTTATAGGGCTGTGGTAAAGATAGGGGTCAAGGAA
TTAGTCAACCAAAATAATAAAGCTAATTATTTTTAGTAAAATTCTTCGTC
CCCTTTCTATTGAGAGACTTGTTTTTAATGCACCAATGACTCATATAGTG
TTGCCTAGTTTTTAATCCAATTTCAAGGGAATATTAAAAATCTCTTTCAT
CGAGATGGTAGAATCAAATACAAGCCTCTCCATAGGAATGATGACATTTT
CTACTTATACAATACTGTGCATATACTACATTAAAAAAAACGgataaaaa
cttctttttttgtttaaattaaAGGAGGTAATAGTGTATTCACGTAGGTT
GGGATTGGTTGGTCAAATAGGTGGTATTAATAACTATACAAGGCATTAAA
GCTAAGTGGGCTAAATTGGATTTGAAtcttcaaacaaacaaaaaaagaat
agcTCTCTCTATATCGTACTCCTATCtctcaagaaaaaaaaactcgaaaa
aaatattgtgaAACCTTTTACTATCGATCTTTCCCATCTCAATAAAAAAG
GTGATCCTCTCTCTTTATCTCCACCTAGACGTTAGGGGTTTAAGAGAAAA
TCGTAATGTTAGAAAAAGGAAGCCAGACCTTTGAAAGGAAAATAAACCTC
ATAGCTATGATAGTCAATTCATCGAGtcgaaacttttaaatttttttcgg
aagGAACATTCGAGGTCAAACAGTTAAGAACGCAAGACcgttttaataaa
aattttaaaaaataaattcaatgtTACTTTTGGTAATGCATTCAGTTAAC
TTTAAAACCTTCTAAATATTCGTTTCGTAAAAATGTTCACAGTCAAAAGT
TGGTTTTTGTATGACGTAAGATTGTTTGAACCGAGTAGACTGActctaaa
ttttcaaatttgtatGGTATAGATATCCCTAGCGATTCTGGCAGCCTGAT
CCTAGCATAACAAACAAGAATAAATTTGCAAAATAATTAGTAAAATCTCA
CTTACTCCATTATCAATAAGAACAGAGTGTACGTAGACCTTCAAGATAAG
CGAGGCattaaaaacagtcaaaaatgataacgtcaaaaaattacatttac
atttgctgttttaaaaccaaaataagAGACCAAAAAgaccaagaaaatca
aaattattattGTAGAAAGAGCAGTAAAAGTTgtttaaaatatgttttta
aaaaatcaccaccgaccaaaaaaaatgaaataaattttgtcgAACTTGGA
TTATCAAGTTATGATGTTGCTGGCATCAATCAAAAAAACCAAACCATTTT
GCTCAATATCAAACAAATcgaagacaaaaaaaattgtgtagAAAAACAAC
AGAGGGTGAACAAAGCAAAAAGTGCTTCCAGTATAgaaatcaaccaaaat
ttaacttttcacCGTGTTGTTTTTTCTTGCATAATGTACACAAATAGACC
CCTCTTCACCAATGCGATACGAAACTTCTGATGGATCAATCCACACAGTA
AACTCTTTAGGTAGACTTTCGACAATCCAAACTGCATCGCAATTTTTTGC
CGTTTTTTCGATCAGTGATTCGCTACCATTTTGATTAATACGTAAACATC
TGAATGCGCTTCCTTTCATTGGTCTGTCTGGATACCAATGACCAGTATAC
ATTTCTATGATGGCTTTGATTAATCTTTCTTTGAATGATTGCAAACCGTG
TGTATTAGTTTTCTTCAAAGTAGAGTTCTGTACGAAACGTAAGATTAAAC
TAACACCAGCCTCGACTTCATGTTCCATACTATTGGGATCGTATGGTGTG
GTATTTTCTTTGTTATTACTCGACAGTCTGTTGTTGTTAGGCGTCGAGTT
GGCGTTGCCGGGTGGCTTTTGGCGTTTCTTATTTTTCATCTCTGATGTTG
TTGGTATAATAGTCTTTCTTGCAATTTGAATATTTGGTGTCATGAtttgt
ttttttcgatttttttgtgTTCAAGTCACTTTGTTTTGAGTTTTTCTACT
ACTTTctctttacaatttttttgagttttttttatttctggaaaataaaa
gaaaatcagaaaatatagaATTACATATATTGATAACAATGAACATAATC
AGATGAGTAAGTCACCACTATCAGTTATAAACCTTGTGGGTATATCATAT
GATTTCTCtaca Run BLAST on NCBI transcript from alignment at sc0000089:386833..390352+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009008 ID=TCONS_00009008|Name=TCONS_00009008|organism=Clytia hemisphaerica|type=transcript|length=3520bp|location=Sequence derived from alignment at sc0000089:386833..390352+ (Clytia hemisphaerica)
GATTTTTTCCtctttaaaatttattaaaattttatcaCGTTTTAATTGAC
TTTTAAGCCCGTCTCATCTTTTAAGATCTAACTATAATGTCTTTAtgtac
aaattttcaaatatatacGAAGTAGTAGATTTATTATTAAATTGTAAAAC
TACCGCTGACTGTTGCCATTTCAAAGGTTCTATTCACAAAATTATTGTCA
ACAGAATAATTGAGGGGGTGAGATAATAATAATATCGTATTTACAAAtta
taagtgaaaaaaaattctaacgtATATACAATGGAAAAggatcgatattt
tttatatgaaaaaataaaataaaaggtttcaaatatttttttcttgactt
tttatTCTTATGGGAGAGATGGAGGGTTTAGAAAGACTTTTCTCTGTTAT
GCCTATAGACCTTTGATCTTGCATTTATAGTCTATTCAATGTTGTAATGC
TACAGTATTCTTCTTTGCAGTTTTAATTACACTTACACAAAATGATGTCT
CGACAAAAGACCAAAAGATTGATTAAAGGTAAAAATTTCATGTGATTTCA
AAAGAATAATTCCtcaaaatgctgaatcagcaagtAAGGTATATCTTCTA
ACGAGTTCGCTAAGGTCATTCTTTTTTCGTCCTATGTCTCTCTTATCCTT
TGATGGTATAatgaaaatattacaaaaataaaaaaatacaattttaattt
tcaaagggAAATCTTTGGCAAATTGAGGCTGATTTCTTAAATTGGAAGTA
TGAatgtaaaaatcaaacaaaacgtTTAAATGAACAACGTATCTAAATAT
AGGAAACAGTATTATTTTTAGAAAGCTATCTGTTTGCTTTGATGACATAA
AAACGAATGATCAACATAGCGGCTTCTTACTCGTGACACTCAAAATCTCA
GGAAGACATTTTCTGTCGGCgaaagttattattttaatcCTTCTTTCTCT
ATGGAGAAACCATTATCTTGTAAAAGGATTGTCAATTCATATGATACATT
cctattgaaaaagaaatcatcCTCAATAtccaaaaaatcttgaaatttga
aaattaaaaaaaattgtactctcaaaaaaaacaaagctaaaaaaattata
tcttcAATTAGCTTTCTTtacaatcttttttaaaaatgtattatatattt
ataaaaaacacaTCAAGTTTACCACCCTTTTTCTAGATACAAGATGCATG
GCAGTTCAAAAAATGGATTAGGGGACACCTAGACAGAAGACCCAGTCACC
TTTCAATGGATTCAATCACATATAAAACATGTGACTACCTTGTGAAAAAT
AACTGATGGTGatggtaagatttttttttttttggggggggttCAACTTA
ATGACCATGCATATTTTGTGTCTTTTATAGGGCTGTGGTAAAGATAGGGG
TCAAGGAATTAGTCAACCAAAATAATAAAGCTAATTATTTTTAGTAAAAT
TCTTCGTCCCCTTTCTATTGAGAGACTTGTTTTTAATGCACCAATGACTC
ATATAGTGTTGCCTAGTTTTTAATCCAATTTCAAGGGAATATTAAAAATC
TCTTTCATCGAGATGGTAGAATCAAATACAAGCCTCTCCATAGGAATGAT
GACATTTTCTACTTATACAATACTGTGCATATACTACATTAAAAAAAACG
gataaaaacttctttttttgtttaaattaaAGGAGGTAATAGTGTATTCA
CGTAGGTTGGGATTGGTTGGTCAAATAGGTGGTATTAATAACTATACAAG
GCATTAAAGCTAAGTGGGCTAAATTGGATTTGAAtcttcaaacaaacaaa
aaaagaatagcTCTCTCTATATCGTACTCCTATCtctcaagaaaaaaaaa
ctcgaaaaaaatattgtgaAACCTTTTACTATCGATCTTTCCCATCTCAA
TAAAAAAGGTGATCCTCTCTCTTTATCTCCACCTAGACGTTAGGGGTTTA
AGAGAAAATCGTAATGTTAGAAAAAGGAAGCCAGACCTTTGAAAGGAAAA
TAAACCTCATAGCTATGATAGTCAATTCATCGAGtcgaaacttttaaatt
tttttcggaagGAACATTCGAGGTCAAACAGTTAAGAACGCAAGACcgtt
ttaataaaaattttaaaaaataaattcaatgtTACTTTTGGTAATGCATT
CAGTTAACTTTAAAACCTTCTAAATATTCGTTTCGTAAAAATGTTCACAG
TCAAAAGTTGGTTTTTGTATGACGTAAGATTGTTTGAACCGAGTAGACTG
ActctaaattttcaaatttgtatGGTATAGATATCCCTAGCGATTCTGGC
AGCCTGATCCTAGCATAACAAACAAGAATAAATTTGCAAAATAATTAGTA
AAATCTCACTTACTCCATTATCAATAAGAACAGAGTGTACGTAGACCTTC
AAGATAAGCGAGGCattaaaaacagtcaaaaatgataacgtcaaaaaatt
acatttacatttgctgttttaaaaccaaaataagAGACCAAAAAgaccaa
gaaaatcaaaattattattGTAGAAAGAGCAGTAAAAGTTgtttaaaata
tgtttttaaaaaatcaccaccgaccaaaaaaaatgaaataaattttgtcg
AACTTGGATTATCAAGTTATGATGTTGCTGGCATCAATCAAAAAAACCAA
ACCATTTTGCTCAATATCAAACAAATcgaagacaaaaaaaattgtgtagA
AAAACAACAGAGGGTGAACAAAGCAAAAAGTGCTTCCAGTATAgaaatca
accaaaatttaacttttcacCGTGTTGTTTTTTCTTGCATAATGTACACA
AATAGACCCCTCTTCACCAATGCGATACGAAACTTCTGATGGATCAATCC
ACACAGTAAACTCTTTAGGTAGACTTTCGACAATCCAAACTGCATCGCAA
TTTTTTGCCGTTTTTTCGATCAGTGATTCGCTACCATTTTGATTAATACG
TAAACATCTGAATGCGCTTCCTTTCATTGGTCTGTCTGGATACCAATGAC
CAGTATACATTTCTATGATGGCTTTGATTAATCTTTCTTTGAATGATTGC
AAACCGTGTGTATTAGTTTTCTTCAAAGTAGAGTTCTGTACGAAACGTAA
GATTAAACTAACACCAGCCTCGACTTCATGTTCCATACTATTGGGATCGT
ATGGTGTGGTATTTTCTTTGTTATTACTCGACAGTCTGTTGTTGTTAGGC
GTCGAGTTGGCGTTGCCGGGTGGCTTTTGGCGTTTCTTATTTTTCATCTC
TGATGTTGTTGGTATAATAGTCTTTCTTGCAATTTGAATATTTGGTGTCA
TGAtttgtttttttcgatttttttgtgTTCAAGTCACTTTGTTTTGAGTT
TTTCTACTACTTTctctttacaatttttttgagttttttttatttctgga
aaataaaagaaaatcagaaaatatagaATTACATATATTGATAACAATGA
ACATAATCAGATGAGTAAGTCACCACTATCAGTTATAAACCTTGTGGGTA
TATCATATGATTTCTCtaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009008-exon-sc0000089-1491911889:386833..387360 | TCONS_00009008-exon-sc0000089-1491911889:386833..387360 | Clytia hemisphaerica | exon |
| TCONS_00009008-exon-sc0000089-1510915933:386833..387360 | TCONS_00009008-exon-sc0000089-1510915933:386833..387360 | Clytia hemisphaerica | exon |
| TCONS_00009008-exon-sc0000089-1575043694:386833..387360 | TCONS_00009008-exon-sc0000089-1575043694:386833..387360 | Clytia hemisphaerica | exon |
| TCONS_00009008-exon-sc0000089-1491911889:388019..390352 | TCONS_00009008-exon-sc0000089-1491911889:388019..390352 | Clytia hemisphaerica | exon |
| TCONS_00009008-exon-sc0000089-1510915933:388019..390352 | TCONS_00009008-exon-sc0000089-1510915933:388019..390352 | Clytia hemisphaerica | exon |
| TCONS_00009008-exon-sc0000089-1575043694:388019..390352 | TCONS_00009008-exon-sc0000089-1575043694:388019..390352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089 | supercontig | sc0000089:386833..390352 + |
Blast
BLAST of TCONS_00009008 vs. Swiss-Prot (Human)
Match: BTG1 (Protein BTG1 OS=Homo sapiens GN=BTG1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.738e-23 Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -1
Query: 2131 SMEHEVEAGVSLILRFVQNSTLKKTNTHGLQSFKERLIKAIIEMYTGHWYPDRPMKGSAFRCLRINQNGSESLIEKTAK--NCDAVWIVESLPKEFTVWIDPSEVSYRIGEEGSICVHY 2481
+M E+ A VS I +F++ L T+ LQ+F + L + + E Y HW+P++P KGS +RC+RIN + LI + A+ + + LP E T+W+DP EVSYRIGE+GSICV Y
Sbjct: 10 TMIGEIAAAVSFISKFLRTKGL--TSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRINHK-MDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLY 125
The following BLAST results are available for this feature:
|
