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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008901 ID=TCONS_00008901|Name=TCONS_00008901|organism=Clytia hemisphaerica|type=transcript|length=2005bp
AGGTTCTACCGTCTAAATATATCTGCGGTACGTATTTTGAATTAAACCCA
TCGATTATATGAATGATGTAAGCATTCATTTGAACGATTCATTTTGAATG
GTAAAGTGGAATATTTAAAACCAAGTTTTCAAGTATTTCGTCACAAATCA
CTTTTTTCTTTCGACGCAAGATGTTTGCCATGTTGTTTTTCACTGTCATC
ATTTTGATGTGTACTTTTGGTGTATGTTTTTCAATCGACTTTTCGTCAGT
GGCACCCGgtgattctttatttttcaagtcGAGAATCGAAGGTGAAATTA
TCAACGCTAATTCTTCTTCTTGGGAGAAAATTATTCCGCTATCCAGCGAA
CCTCAATGTAGGTCAAAATGCCATCATTCAACTCAATGTCGGTCAGCAGC
ATTTTATCCCACAGACAACATTTGCAAGTTCAGAGACGTAAATCGCCTTT
CACCAAACGGCGTATTCGTGCAGAAAGCTGGTATCAAAGTTTATGACAAA
CGAACAGCGCCTATTACACCGGTTATTATAAAAACGGTCGAAAATGCTAC
AGATTGCAAAGATGTCATGAATCAAGGCCACAAAAGAAGTGGTGTTTACA
TGGTTTCAACTGATGTCCAAAAATACGTCCCAATCCTCTGTGACATGGAC
ACAGCAGGTGGTGGCTGGACAGTGATTCAGCAACGTGTGGATGGTTCCAT
CCCTTTCAATCGAACATGGAATTCTTACAAATTTGGCTTCGGTGATTTCT
CTACTAACTTCTGGTTCGGTAATGATCGCATACACAATCTCACAACCCAT
TATGGCAACGATAACGACATCATCTTTGATCTCACAAAGCATGACGGAAC
CAAAACGAACGCAGGGTACAGGAATTTCTACATCGATGGTGAATCTGACA
AATATCGTCTCCATGTTAATAGCCGTTATGATCCTGATCTTCCAGATAGT
TCATATGCGGATGTAACTTTCACTCAAGGTTTTGGCTTACACGACGGAAA
AATCTTCTACACTATTGACGCTGATTCAAGTTTAAGTTGCTCAGAAGAAA
AGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCCATTTGAAT
GGAATATATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGGGATAAAGT
CACTTTTATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACATCCATTCA
TCAAAACCCGAATGCTGGTCAGACGAAATAATTGACAGACGTATACCAGT
ACTAGTATCTTTGATCATAGATATTCTATTATCTGATTTATAGTTAGTGT
ATAAAAGATTcgaatattttaagaatttcaaatgtgtttgaagtttttga
atttattcGAATTTTTTACTATCACTacaaaaatggcgaaaactagGGAA
TAACAAGTTTAAACTCCTTAGTGAAAAAGATATTGAGAAATTGAGTGGCT
TTTTTTTCAGgcacttttggaaaaatataattttgttctGCTTTTTTCTT
CGGACATCAACTGTAAAACTGATTTATGTACCGCACTTTACCCAAAACAA
TCGAAACGCTCCCTTAACAATGAACGGCTTTAAAAACGGCCCATATCTTG
AACCTTTGTTTACCGGTCGACAAGAATCGAAAATCCTTATTCTTAAAGTA
AAACCCACAATTGattatttagtattttttacACCTGCTGTTTTTTTACA
CGAGAAATCTTTCTCTATCACTTTGAATAAGTGAACAAATTGCTCTTTCA
CTTTCGGATAGCATGAGAGAGAATAGCTCATTTACTTTGTGGAATGCTGT
CATGAAGATGAGACAAAACAAAGATGTAAATAAAATTGTCTGTATAAATC
TTGTAAATTATCGATGTAAATAgttatattattttcttttaaataattta
tttgtttgtttttcccAGCACTTTTATTTTGTGAATGTATACATAAGATT
TTTAACATATCTTaaccatttttcattttatttgatcaTCTCTTTACAGG
AAAAG Run BLAST on NCBI protein sequence of TCONS_00008901-protein >TCONS_00008901-protein ID=TCONS_00008901-protein|Name=TCONS_00008901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MFAMLFFTVIILMCTFGVCFSIDFSSVAPGDSLFFKSRIEGEIINANSSS
WEKIIPLSSEPQCRSKCHHSTQCRSAAFYPTDNICKFRDVNRLSPNGVFV
QKAGIKVYDKRTAPITPVIIKTVENATDCKDVMNQGHKRSGVYMVSTDVQ
KYVPILCDMDTAGGGWTVIQQRVDGSIPFNRTWNSYKFGFGDFSTNFWFG
NDRIHNLTTHYGNDNDIIFDLTKHDGTKTNAGYRNFYIDGESDKYRLHVN
SRYDPDLPDSSYADVTFTQGFGLHDGKIFYTIDADSSLSCSEEKGGSGWW
FANCYKIHLNGIYGLQGSDAGIVWDKVTFIVPSSGGNKVQHPFIKTRMLV
RRNN Run BLAST on NCBI transcript from alignment at sc0000088:487190..492110- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008901 ID=TCONS_00008901|Name=TCONS_00008901|organism=Clytia hemisphaerica|type=transcript|length=4921bp|location=Sequence derived from alignment at sc0000088:487190..492110- (Clytia hemisphaerica)
AGGTTCTACCGTCTAAATATATCTGCGGTACGTATTTTGAATTAAACCCA
TCGATTATATGAATGATGTAAGCATTCATTTGAACGATTCATTTTGAATG
GTAAAGTGGAATATTTAAAACCAAGTTTTCAAGTATTTCGTCACAAATCA
CTTTTTTCTTTCGACGCAAGATGTTTGCCATGTTGTTTTTCACTGTCATC
ATTTTGATGTGTACTTTTGGTGTATGTTTTTCAATCGACTTTTCGTCAGT
GGCACCCGGTGATTCTTTATTTTTCAAGTCGAGAATCGAAGGTGAAATTA
TCAACGCTAATTCTTCTTCTTGGGAGAAAATTATTCCGCTATCCAGCGAA
CCTCAATGTAGGTCAAAATGCCATCATTCAACTCAATGTCGGTCAGCAGC
ATTTTATCCCACAGACAACATTTGCAAGTTCAGAGACGTAAATCGCCTTT
CACCAAACGGCGTATTCGTGCAGAAAGCTGGTATCAAAGTTTATGACAAA
CGAACAGCGCCTATTACACCGGTTATTATAAAAACGGTCGAAAATGCTAC
AGATTGCAAAGATGTCATGAATCAAGGCCACAAAAGAAGTGGTGTTTACA
TGGTTTCAACTGATGTCCAAAAATACGTCCCAATCCTCTGTGACATGGAC
ACAGCAGGTATGTTAAGCAGTTATTGGAAAAAGTCGAATCCAATATGCAC
TCTTCTCGTAGCCCAATATTTTTCATATTGGATGAGACTACGTCCAAATA
AATGGTTTATTATCCGTTCATCGCTAAAATATTTCCCGTTTTCAAGCATA
ATTCCAATTTAATTCATCGTGAATTATATGATTTGTTCTCTGTTTATTCA
AAAGTCTTATTTTTATTTGTGACGTAACGTCAAAAAGAAGATGCTCAATT
GTCATTGAACTTGTTTGTGACGTCAATTTTTGAAATACGCTCTCTAATTC
GATCTTCAAGGGAAATTGGATTATCATCGAATAAGGGAGCTTATCGAATA
AGGGAGCGTCCTTTATGAGAGTACCGAGTTTATGTATGTGTATTTTTCAG
CGACGGAGACGGTAAGGTTCTAATTGGAGTAGATCCTGACCATCTAAGGA
CGACGGTAAATCAGCACTTTTACCGTCCTCGATTTTGCGGGGCGGAATTG
CGGGTTTTTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGCAAA
TACATAAACTCGAGTTTCTTGTTGACAGGGACTTTAAATTTCATCGAATA
AGGGAGCCTATCGAATAGTAGAATGTCGAATTAGAGAGCGTGAACTGTAT
GTAGCCCCCATGGAAGCTATATATTCGAAAATATTGGACAGCAAAGAAGC
CAATCAAATGTCGCTATTTACGCGCTTCGGATAATAATCTTTTTTATTTG
ACCCCTTTTCTGTGAGGTTGGGCCTACCTCGCGTTTCAAAATAAAAGTTA
AAGTGGAAACCCCATTACAAGTACGGGAAGGGTAGGGAAAATAGGGAGGC
TAAGAACTGACATATGCTGACATCGGTTTTTAAAGGGTTTAAGAAATCTT
ATTGCAAACGTCAAAAATTAGCTTAAATCCCGTTTTGCCACTTTCCCGTA
AGGACGATTGCCGGGCCGGACGGCGTTTTCAGCCGGTCAAATTTTCCGTG
AGGCATCTCTACCAACCGGAAAACAAGCTCGCAAAGTTTCAAAGACGTAG
CATCAAAACTCCACACACAGCGGCCGATACAAGTACTTGTTAATCACACT
CTCCAATGCCGCGCAAGTGTTTACAAAATTGATTTCAATGTTTTTTTTCT
TATTTTTTTTATTCGAACGTTTTAATTGCATTCGAAATTTATTTTGTGAG
AAAGAAAGACTACAGTATGAACAACAATAAAAGAAAAACATGGAGAGAAG
AGAAAAATATAAAATTTTCAGTGTAATTTCTGTAATTTACTTTCATAACT
GGGAAAAAGTAGTGAAACCCATTGTGCGATTAGCTCGATATCACATAATA
ACTCGTACAATTCGAAAATTGCACTCGTGATTTTTTTGTTTCGAAAAAAA
AAATCACTCGTGCAATTATTCTCGAATTGCACTCGTTATCATTACATATA
CTAATCACATTATGTGATTACATATACAAACTAAAACTTTCATTAATGCA
TTGCTACTAATCTTGCAACATTCTTTCGCATTGATGACAAAAGATTCTAT
TTCTTTTTCACCAGGTGGTGGCTGGACAGTGATTCAGCAACGTGTGGATG
GTTCCATCCCTTTCAATCGAACATGGAATTCTTACAAATTTGGCTTCGGT
GATTTCTCTACTAACTTCTGGTTCGGTAATGATCGCATACACAATCTCAC
AACCCATTATGGCAACGATAATGACATCATCTTTGATCTCACAAAGCATG
ACGGAACCAAAACGAACGCAGGGTACAGGAATTTCTACATCGATGGTGAA
TCTAACAAATATCGTCTCCATGTTAATAGCCGTTATGATCCTGATCTTCC
AGATAGTTCATATGCGGATGTAACTTTCACTCAAGGTTTTGGCTTACACG
ACGGAAAAATCTTCTACACTATTGACGCTGATTCAAGTTTAAGTTGCTCA
GAAGAAAAGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCCA
TTTGAATGGAATATATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGGG
ATAAAGTCACTTTTATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACAT
CCATTCATCAAAACCCGAATGCTGGTCAGACGAAATAATTGACAGACGTA
TACCAGTACTAGTATCTTTGATCATAGATATTCTATTATCTGATTTATAG
TTAGTGTATAAAAGATTCGAATATTTTAAGAATTTCAAATGTGTTTGAAG
TTTTTGAATTTATTCGAATTTTTTACTATCACTACAAAAATGGCGAAAAC
TAGGGAATAACAAGTTTAAACTCCTTAGTGAAAAAGATATTGAGAAATTG
AGTGGCTTTTTTTTCAGGCACTTTTGGAAAAATATAATTTTGTTCTGCTT
TTTTCTTCGGACATCAACTGTAAAACTGATTTATGTACCGCACTTTACCC
AAAACAATCGAAACGCTCCCTTAACAATGAACGGCCTTAAAAACGGCCCA
TATCTTGAACCTTTGTTTACCGGTCGACAAGAATCGAAAATCCTTATTCT
TAAAGTAAAACCCACAATTGATTTAGTATTTTTTACACCTGCTGTTTTTT
TACACGAGAAATCTTTCTCTGTCACTTTGAATAAGTGAACAAATTGCTCT
TTCACTTTCGGATAGCATGAGAGAGAATAGCTCATTTACTTTGTGGAATG
CTGTCATGAAGANGTACAATTCGAAAATTGCACTCGTGATTTTTTTGTTT
CGAAAAAAAAAATCACTCGTGCAATTATTCTCGAATTGCACTCGTTATCA
TTACATATACTAATCACATTATGTGATTACATATACAAACTAAAACTTTC
ATTAATGCATTGCTACTAATCTTGCAACATTCTTTCGCATTGATGACAAA
AGATTCTATTTCTTTTTCACCAGGTGGTGGCTGGACAGTGATTCAGCAAC
GTGTGGATGGTTCCATCCCTTTCAATCGAACATGGAATTCTTACAAATTT
GGCTTCGGTGATTTCTCTACTAACTTCTGGTTCGGTAATGATCGCATACA
CAATCTCACAACCCATTATGGCAACGATAACGACATCATCTTTGATCTCA
CAAAGCATGACGGAACCAAAACGAACGCAGGGTACAGGAATTTCTACATC
GATGGTGAATCTGACAAATATCGTCTCCATGTTAATAGCCGTTATGATCC
TGATCTTCCAGATAGTTCATATGCGGATGTAACTTTCACTCAAGGTTTTG
GCTTACACGACGGAAAAATCTTCTACACTATTGACGCTGATTCAAGTTTA
AGTTGCTCAGAAGAAAAGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTA
CAAGATCCATTTGAATGGAATATATGGACTTCAAGGCAGCGATGCAGGGA
TCGTTTGGGATAAAGTCACTTTTATAGTTCCTTCTAGCGGCGGCAATAAA
GTTCAACATCCATTCATCAAAACCCGAATGCTGGTCAGACGAAATAATTG
ACAGACGTATACCAGTACTAGTATCTTTGATCATAGATATTCTATTATCT
GATTTATAGTTAGTGTATAAAAGATTCGAATATTTTAAGAATTTCAAATG
TGTTTGAAGTTTTTGAATTTATTCGAATTTTTTACTATCACTACAAAAAT
GGCGAAAACTAGGGAATAACAAGTTTAAACTCCTTAGTGAAAAAGATATT
GAGAAATTGAGTGGCTTTTTTTTCAGGCACTTTTGGAAAAATATAATTTT
GTTCTGCTTTTTTCTTCGGACATCAACTGTAAAACTGATTTATGTACCGC
ACTTTACCCAAAACAATCGAAACGCTCCCTTAACAATGAACGGCTTTAAA
AACGGCCCATATCTTGAACCTTTGTTTACCGGTCGACAAGAATCGAAAAT
CCTTATTCTTAAAGTAAAACCCACAATTGATTATTTAGTATTTTTTACAC
CTGCTGTTTTTTTACACGAGAAATCTTTCTCTATCACTTTGAATAAGTGA
ACAAATTGCTCTTTCACTTTCGGATAGCATGAGAGAGAATAGCTCATTTA
CTTTGTGGAATGCTGTCATGAAGATGAGACAAAACAAAGATGTAAATAAA
ATTGTCTGTATAAATCTTGTAAATTATCGATGTAAATAGTTATATTATTT
TCTTTTAAATAATTTATTTGTTTGTTTTTCCCAGCACTTTTATTTTGTGA
ATGTATACATAAGATTTTTAACATATCTTAACCATTTTTCATTTTATTTG
ATCATCTCTTTACAGGAAAAG Coding sequence (CDS) from alignment at sc0000088:487190..492110- >TCONS_00008901 ID=TCONS_00008901|Name=TCONS_00008901|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0000088:487190..492110- (Clytia hemisphaerica)
GTGGTGGCTGGACAGTGATTCAGCAACGTGTGGATGGTTCCATCCCTTTC
AATCGAACATGGAATTCTTACAAATTTGGCTTCGGTGATTTCTCTACTAA
CTTCTGGTTCGGTAATGATCGCATACACAATCTCACAACCCATTATGGCA
ACGATAACGACATCATCTTTGATCTCACAAAGCATGACGGAACCAAAACG
AACGCAGGGTACAGGAATTTCTACATCGATGGTGAATCTGACAAATATCG
TCTCCATGTTAATAGCCGTTATGATCCTGATCTTCCAGATAGTTCATATG
CGGATGTAACTTTCACTCAAGGTTTTGGCTTACACGACGGAAAAATCTTC
TACACTATTGACGCTGATTCAAGTTTAAGTTGCTCAGAAGAAAAGGGCGG
CTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCCATTTGAATGGAATAT
ATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGGGATAAAGTCACTTTT
ATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACATCCATTCATCAAAAC
CCGAATGCTGGTCAGACGAAATAATTGAATGTTTGCCATGTTGTTTTTCA
CTGTCATCATTTTGATGTGTACTTTTGGTGTATGTTTTTCAATCGACTTT
TCGTCAGTGGCACCCGGTGATTCTTTATTTTTCAAGTCGAGAATCGAAGG
TGAAATTATCAACGCTAATTCTTCTTCTTGGGAGAAAATTATTCCGCTAT
CCAGCGAACCTCAATGTAGGTCAAAATGCCATCATTCAACTCAATGTCGG
TCAGCAGCATTTTATCCCACAGACAACATTTGCAAGTTCAGAGACGTAAA
TCGCCTTTCACCAAACGGCGTATTCGTGCAGAAAGCTGGTATCAAAGTTT
ATGACAAACGAACAGCGCCTATTACACCGGTTATTATAAAAACGGTCGAA
AATGCTACAGATTGCAAAGATGTCATGAATCAAGGCCACAAAAGAAGTGG
TGTTTACATGGTTTCAACTGATGTCCAAAAATACGTCCCAATCCTCTGTG
ACATGGACACAGCAGGTGGTGGCTGGACAGTGATTCAGCAACGTGTGGAT
GGTTCCATCCCTTTCAATCGAACATGGAATTCTTACAAATTTGGCTTCGG
TGATTTCTCTACTAACTTCTGGTTCGGTAATGATCGCATACACAATCTCA
CAACCCATTATGGCAACGATAACGACATCATCTTTGATCTCACAAAGCAT
GACGGAACCAAAACGAACGCAGGGTACAGGAATTTCTACATCGATGGTGA
ATCTGACAAATATCGTCTCCATGTTAATAGCCGTTATGATCCTGATCTTC
CAGATAGTTCATATGCGGATGTAACTTTCACTCAAGGTTTTGGCTTACAC
GACGGAAAAATCTTCTACACTATTGACGCTGATTCAAGTTTAAGTTGCTC
AGAAGAAAAGGGCGGCTCAGGTTGGTGGTTTGCCAACTGTTACAAGATCC
ATTTGAATGGAATATATGGACTTCAAGGCAGCGATGCAGGGATCGTTTGG
GATAAAGTCACTTTTATAGTTCCTTCTAGCGGCGGCAATAAAGTTCAACA
TCCATTCATCAAAACCCGAATGCTGGTCAGACGAAATAATTGAATGTTTG
CCATGTTGTTTTTCACTGTCATCATTTTGATGTGTACTTTTGGTGTATGT
TTTTCAATCGACTTTTCGTCAGTGGCACCCGGTGATTCTTTATTTTTCAA
GTCGAGAATCGAAGGTGAAATTATCAACGCTAATTCTTCTTCTTGGGAGA
AAATTATTCCGCTATCCAGCGAACCTCAATGTAGGTCAAAATGCCATCAT
TCAACTCAATGTCGGTCAGCAGCATTTTATCCCACAGACAACATTTGCAA
GTTCAGAGACGTAAATCGCCTTTCACCAAACGGCGTATTCGTGCAGAAAG
CTGGTATCAAAGTTTATGACAAACGAACAGCGCCTATTACACCGGTTATT
ATAAAAACGGTCGAAAATGCTACAGATTGCAAAGATGTCATGAATCAAGG
CCACAAAAGAAGTGGTGTTTACATGGTTTCAACTGATGTCCAAAAATACG
TCCCAATCCTCTGTGACATGGACACAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008901-exon-sc0000088-1575043694:491454..492110 | TCONS_00008901-exon-sc0000088-1575043694:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008901-exon-sc0000088-1575043694:487190..488537 | TCONS_00008901-exon-sc0000088-1575043694:487190..488537 | Clytia hemisphaerica | exon |
| TCONS_00008901-exon-sc0000088-1510915933:491454..492110 | TCONS_00008901-exon-sc0000088-1510915933:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008901-exon-sc0000088-1510915933:487190..488537 | TCONS_00008901-exon-sc0000088-1510915933:487190..488537 | Clytia hemisphaerica | exon |
| TCONS_00008901-exon-sc0000088-1491911889:491454..492110 | TCONS_00008901-exon-sc0000088-1491911889:491454..492110 | Clytia hemisphaerica | exon |
| TCONS_00008901-exon-sc0000088-1491911889:487190..488537 | TCONS_00008901-exon-sc0000088-1491911889:487190..488537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:487190..492110 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008901 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 150.214 bits (378), Expect = 3.380e-40 Identity = 84/245 (34.29%), Postives = 134/245 (54.69%), Query Frame = 3
Query: 510 PITPV-IIKTVENATDCKDVMNQGHKRSGVYMVSTDVQKYVPILCDMDTAGGGWTVIQQRVDGSIPFNRTWNSYKFGFGDFSTNFWFGNDRIHNLTTHYGNDNDIIFDLTKHDGTKTNAGYRNFYIDGESDKYRLHVNSRYDPDLPDSSYADVTFTQGFGLHDGKIFYTIDAD---SSLSCSEEKGGSGWWFANCYKIHLNGIYGLQGSDA---GIVWDKVTFIVPSSGGNKVQHPFIKTRMLVR 1223
P PV +++ E +C+++++QG SG Y + + +P+ CDMDT GGGW V Q+R DGS+ F R+W+SY+ GFG+ + FW GN+ +H LT + ++ +L +G +T A Y F + GE D Y+L + +++ T LH G+ F T DAD S+ +C+ G+ WW+A+CY+ +LNG Y + + A GI W + G V HP+ + RM++R
Sbjct: 77 PGDPVNLLRCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQ--GNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALG----------KFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGA-WWYASCYRSNLNGRYAVSEAAAHKYGIDW---------ASGRGVGHPYRRVRMMLR 299
The following BLAST results are available for this feature:
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