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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008727 ID=TCONS_00008727|Name=TCONS_00008727|organism=Clytia hemisphaerica|type=transcript|length=4846bpRun BLAST on NCBI protein sequence of TCONS_00008727-protein >TCONS_00008727-protein ID=TCONS_00008727-protein|Name=TCONS_00008727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1179bp MSSEDIRGNFLTDGGQKNRRFSDSSDSDNEAETLINNQTINEAALQIQMPRun BLAST on NCBI transcript from alignment at sc0000087:397620..410210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008727 ID=TCONS_00008727|Name=TCONS_00008727|organism=Clytia hemisphaerica|type=transcript|length=12591bp|location=Sequence derived from alignment at sc0000087:397620..410210+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000087:397620..410210+ >TCONS_00008727 ID=TCONS_00008727|Name=TCONS_00008727|organism=Clytia hemisphaerica|type=CDS|length=49560bp|location=Sequence derived from alignment at sc0000087:397620..410210+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008727 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 293.508 bits (750), Expect = 2.413e-81 Identity = 246/902 (27.27%), Postives = 437/902 (48.45%), Query Frame = 1
Query: 469 DDTIDL-----TIFEAAREGCLEKIITQIEYLKREDDIKRLLEQRNQCEETPLHVAAKYNQENIIRYLVNHNVW--IDVPDQQKNTPLHTAIKNDSKIATKTLVEMGANVHLKNDYGLYPIHFAASRGNKDLCRILVSYKEVDVNVTDHGLCTPLHIAVGSQQAGTVQLLLSHKANPYVQDLEGRYPLHIAASDGSDAIIEILVKAMKRFTVTGPHANVDVQNNEQKTPLHMACLHGHVKSVTKLLEHQADVNCQCSSKITPMHLAAIYGRDDVIKILVKYGSK----LNKRDTFHMTPLHRACLYGRINVISLLYTLGAHLELRNETGFTPLLCAVWSGSIDVVRYLLNCGVNFEAIDNTERNVLHIAAQKKQ--HKLLEVLLQHKGILGLINNTDQNNWTPLHYATYFMSVKCQRILLDHQSTVTARNKRRKTPIHFASCLGKPAAVHMLCEVSRDC--IDQTDDSLKTPLMLAAINGNIQICEVLISYGADVEKTDDLKMTVLHYACQNGYPEIVKMLLESSAN-VDATNLNFETPLHLAAKNGKTDCMEALIDSGAQVVIKDKSGKNCLDKAIENYKKNACIYLLRDKHWKQLMQNVDFN--GNR-PMDKMIERMPAVAEIVLDNCIETSNLEKEHIDYSITYYF-------DFVALTPEPGSKSNKVCGPSIMAKNNRETLLAHPVTICFINSQWKLLPRYMXXXXXXXXXXXXXXXXXMIVKEKDWIYRSPENSTSNITNTSFPDYQDAVFVNPTCEATSMMVXXXXXXXXXXXQLF---KEFIQFIMSPFDYIMDLVNYIEIGLYVTSLIFVTTYFMDEHYRCLQMEHYDNEALRVNAGAVAIMLAFCNMLFYMKRAPFVGLIVLMFIEVLKTVISVLLIFGFIIVGFALSFHFI 3087
DDT D +FE + G L+ Q + LKR DD+ LH AA Q ++ + + + D NTPLH A++ + + K L+ GAN +L+N + P+H A N ++ ++L+ ++ +DVN+ T + IA + + +Q+LL A P + G +P+H AA GS +EI+++ + + +++ NN + TPLH+A +G ++ + L++ A ++ + T +H AA G +++K+++ S +N D H T LHRA L+ + L ++GA + + G +PL+ A S S ++V LL+ G + DN RN LH+ Q+ L +Q + I L+ + D + TPLHYA LL ++ +++K +K+P+HFA+ G+ L + D +++ D TPL LAA NG+ ++ ++L+ GA + +D T LH+A GY + +K++L+++ D + + T LH AA+ G + L+ A +V+ +K + L A+ N +K + ++R K W + ++ N GN+ P+ +MIE +P +++LD C+ S +K DY I Y F +F TP + + M +NNR LL HPV ++ +W + ++L +Y + L +T ++V K + NST I TS D+ + + + T+ +I +I+ + +F KE Q +Y MD+ N +E +Y T +IFV F++ L+ GA+A+ + N L Y++R G+ ++M +LKT++ ++F F+++ F LSF+ +
Sbjct: 27 DDTEDFKESLKVVFEGSAYG-LQNFNKQ-KKLKRCDDMDTFF----------LHYAAAEGQIELMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYS-RQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVL-NKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGM---AFNSTGIINETS--DHSEIL------DTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE-----------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYIL 891 The following BLAST results are available for this feature:
BLAST of TCONS_00008727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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