TCONS_00008727-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008727-protein
Unique NameTCONS_00008727-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008727-protein ID=TCONS_00008727-protein|Name=TCONS_00008727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1179bp
MSSEDIRGNFLTDGGQKNRRFSDSSDSDNEAETLINNQTINEAALQIQMP
VGSQTDLNVHELDDTIDLTIFEAAREGCLEKIITQIEYLKREDDIKRLLE
QRNQCEETPLHVAAKYNQENIIRYLVNHNVWIDVPDQQKNTPLHTAIKND
SKIATKTLVEMGANVHLKNDYGLYPIHFAASRGNKDLCRILVSYKEVDVN
VTDHGLCTPLHIAVGSQQAGTVQLLLSHKANPYVQDLEGRYPLHIAASDG
SDAIIEILVKAMKRFTVTGPHANVDVQNNEQKTPLHMACLHGHVKSVTKL
LEHQADVNCQCSSKITPMHLAAIYGRDDVIKILVKYGSKLNKRDTFHMTP
LHRACLYGRINVISLLYTLGAHLELRNETGFTPLLCAVWSGSIDVVRYLL
NCGVNFEAIDNTERNVLHIAAQKKQHKLLEVLLQHKGILGLINNTDQNNW
TPLHYATYFMSVKCQRILLDHQSTVTARNKRRKTPIHFASCLGKPAAVHM
LCEVSRDCIDQTDDSLKTPLMLAAINGNIQICEVLISYGADVEKTDDLKM
TVLHYACQNGYPEIVKMLLESSANVDATNLNFETPLHLAAKNGKTDCMEA
LIDSGAQVVIKDKSGKNCLDKAIENYKKNACIYLLRDKHWKQLMQNVDFN
GNRPMDKMIERMPAVAEIVLDNCIETSNLEKEHIDYSITYYFDFVALTPE
PGSKSNKVCGPSIMAKNNRETLLAHPVTICFINSQWKLLPRYMYYLSLLT
YVVYLTLLTTMIVKEKDWIYRSPENSTSNITNTSFPDYQDAVFVNPTCEA
TSMMVISITLIIYSIIQLFKEFIQFIMSPFDYIMDLVNYIEIGLYVTSLI
FVTTYFMDEHYRCLQMEHYDNEALRVNAGAVAIMLAFCNMLFYMKRAPFV
GLIVLMFIEVLKTVISVLLIFGFIIVGFALSFHFISGDWNDGPDADFFDM
KKSIIKVVAMTIGDGSMSKGKKRGRGGKGGSGSSIAEMTDYLYLVFALLL
PIVMVNLMIGLAVGEIANVTRTAKLCMLKDQVYLVTNLQSKYPESYLKLH
HQSSVTVYPNKRNLWEKFTDWLQAYTYDSLASFSENDDEEQNKRTDNEAL
VKEQINSINKKMKRMSRQNEEQADIMRKILEILNGVSSESVPSPPTSRRS
SVAPLIRLNDSPASPSPVDKMIKSTIFEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004899XLOC_004899Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008727TCONS_00008727Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR005821Ion_trans_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 171..201
e-value: 0.021
score: 24.0
coord: 238..267
e-value: 0.32
score: 20.0
coord: 313..342
e-value: 6.7E-4
score: 29.0
coord: 280..309
e-value: 3.4E-5
score: 33.3
coord: 138..167
e-value: 0.038
score: 23.1
coord: 614..643
e-value: 2100.0
score: 2.6
coord: 105..134
e-value: 8.1E-5
score: 32.0
coord: 346..375
e-value: 0.21
score: 20.7
coord: 379..408
e-value: 8.4E-5
score: 32.0
coord: 581..610
e-value: 1.2E-4
score: 31.4
coord: 412..441
e-value: 9.8
score: 15.1
coord: 481..510
e-value: 340.0
score: 8.5
coord: 548..577
e-value: 1.0E-5
score: 35.0
coord: 205..234
e-value: 0.018
score: 24.2
coord: 515..544
e-value: 1.6E-4
score: 31.0
coord: 448..477
e-value: 0.21
score: 20.7
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 517..546
e-value: 6.3E-5
score: 23.1
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 105..137
score: 10.312
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 313..345
score: 12.315
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 238..260
score: 9.084
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 208..237
score: 8.683
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 379..411
score: 11.541
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 515..547
score: 12.209
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 448..480
score: 8.71
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 280..312
score: 11.14
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 581..613
score: 12.743
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 548..580
score: 11.541
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 346..378
score: 10.606
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 138..170
score: 10.927
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 329..424
e-value: 6.7E-34
score: 116.5
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 187..278
e-value: 1.5E-25
score: 88.9
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 425..502
e-value: 1.5E-16
score: 59.6
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 503..592
e-value: 9.3E-31
score: 105.9
coord: 279..328
e-value: 1.3E-18
score: 66.5
coord: 54..186
e-value: 9.7E-29
score: 99.4
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 318..407
e-value: 9.5E-15
score: 54.9
coord: 417..504
e-value: 9.2E-11
score: 42.1
coord: 221..309
e-value: 7.8E-13
score: 48.7
coord: 93..169
e-value: 2.0E-12
score: 47.4
coord: 553..636
e-value: 4.1E-14
score: 52.8
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 593..664
e-value: 1.9E-11
score: 43.4
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 105..636
score: 124.662
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 270..634
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 103..308
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 747..1022
e-value: 6.5E-7
score: 28.7
NoneNo IPR availablePFAMPF13637Ank_4coord: 175..214
e-value: 2.4E-5
score: 24.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1136..1169
NoneNo IPR availableCDDcd00204ANKcoord: 90..159
e-value: 3.11517E-10
score: 58.1638
NoneNo IPR availableCDDcd00204ANKcoord: 275..400
e-value: 1.51975E-33
score: 126.344
NoneNo IPR availableCDDcd00204ANKcoord: 200..334
e-value: 3.13855E-30
score: 116.714
NoneNo IPR availableCDDcd00204ANKcoord: 133..259
e-value: 1.23307E-29
score: 114.788
NoneNo IPR availableCDDcd00204ANKcoord: 510..635
e-value: 5.30132E-34
score: 127.5
NoneNo IPR availableCDDcd00204ANKcoord: 376..501
e-value: 1.17068E-27
score: 109.395

Blast
[Close]
BLAST of TCONS_00008727-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3)

HSP 1 Score: 360.533 bits (924), Expect = 3.467e-106
Identity = 289/1027 (28.14%), Postives = 496/1027 (48.30%), Query Frame = 0 
Query:   63 DDTIDL-----TIFEAAREGCLEKIITQIEYLKREDDIKRLLEQRNQCEETPLHVAAKYNQENIIRYLVNHNVW--IDVPDQQKNTPLHTAIKNDSKIATKTLVEMGANVHLKNDYGLYPIHFAASRGNKDLCRILVSYKEVDVNVTDHGLCTPLHIAVGSQQAGTVQLLLSHKANPYVQDLEGRYPLHIAASDGSDAIIEILVKAMKRFTVTGPHANVDVQNNEQKTPLHMACLHGHVKSVTKLLEHQADVNCQCSSKITPMHLAAIYGRDDVIKILVKYGSK----LNKRDTFHMTPLHRACLYGRINVISLLYTLGAHLELRNETGFTPLLCAVWSGSIDVVRYLLNCGVNFEAIDNTERNVLHIAAQKKQ--HKLLEVLLQHKGILGLINNTDQNNWTPLHYATYFMSVKCQRILLDHQSTVTARNKRRKTPIHFASCLGKPAAVHMLCEVSRDC--IDQTDDSLKTPLMLAAINGNIQICEVLISYGADVEKTDDLKMTVLHYACQNGYPEIVKMLLESSAN-VDATNLNFETPLHLAAKNGKTDCMEALIDSGAQVVIKDKSGKNCLDKAIENYKKNACIYLLRDKHWKQLMQNVDFN--GNR-PMDKMIERMPAVAEIVLDNCIETSNLEKEHIDYSITYYF-------DFVALTPEPGSKSNKVCGPSIMAKNNRETLLAHPVTICFINSQWKLLPRYMYYLSLLTYVVYLTLLTTMIVKEKDWIYRSPENSTSNITNTSFPDYQDAVFVNPTCEATSMMVISITLIIYSIIQLFKEFIQFIMSPFDYIMDLVNYIEIGLYVTSLIFVTTYFMDEHYRCLQMEHYDNEALRVNAGAVAIMLAFCNMLFYMKRAPFVGLIVLMFIEVLKTVISVLLIFGFIIVGFALSFHFISGDWNDGPDADFFDMKKSIIKVVAMTIGDGSMSKG--KKRGRGGKGGSGSSIAEMTDYLYLVFALLLPIVMVNLMIGLAVGEIANVTRTAKLCMLKDQVYLVTNLQSKYPESYLKLHHQSSVTVYPNK 1061
            DDT D       +FE +  G L+    Q + LKR DD+              LH AA   Q  ++  +   +    +   D   NTPLH A++ +   + K L+  GAN +L+N   + P+H A    N ++ ++L+ ++ +DVN+      T + IA  +  +  +Q+LL   A P   +  G +P+H AA  GS   +EI+++  +    +    +++  NN + TPLH+A  +G ++ +   L++ A ++     + T +H AA  G  +++K+++   S     +N  D  H T LHRA L+    +   L ++GA +   +  G +PL+ A  S S ++V  LL+ G   +  DN  RN LH+  Q+      L    +Q + I  L+ + D +  TPLHYA           LL    ++ +++K +K+P+HFA+  G+      L +   D   +++ D    TPL LAA NG+ ++ ++L+  GA +  +D    T LH+A   GY + +K++L+++    D  + +  T LH AA+ G    +  L+   A +V+ +K   + L  A+ N +K   + ++R K W + ++    N  GN+ P+ +MIE +P   +++LD C+  S  +K   DY I Y F       +F   TP        +   + M +NNR  LL HPV   ++  +W       + ++L +Y + L  +T ++V  K  +     NST  I  TS     D   +  T  +  +    I + + SI    KE  Q      +Y MD+ N +E  +Y T +IFV   F++               L+   GA+A+   + N L Y++R    G+ ++M   +LKT++   ++F F+++ F LSF +I  +  D   +       SII+  +M +GD +  +   +   R        S A++       F + +PIV++NL+IGLAVG+IA V + A L  +  QV L T+L+ K P  +L+   Q S  VYPNK
Sbjct:   27 DDTEDFKESLKVVFEGSAYG-LQNFNKQ-KKLKRCDDMDTFF----------LHYAAAEGQIELMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYS-RQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVL-NKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCMLHSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGM---AFNSTGIINETS-----DHSEILDTTNSYLIKTCMILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVE-----------IPAHLQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSF-YILLNLQDPFSSPLL----SIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVS-----FTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNK 1009
The following BLAST results are available for this feature:
BLAST of TCONS_00008727-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRPA13.467e-10628.14Transient receptor potential cation channel subfam... [more]
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