TCONS_00008621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008621
Unique NameTCONS_00008621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008621 ID=TCONS_00008621|Name=TCONS_00008621|organism=Clytia hemisphaerica|type=transcript|length=2379bp
TTACTGCATGCATGAATGCACAGCACAATTGAATGAAAACGAGCTTTGCT
CAAGGTGAGTTTTCCGCGAgatttgcaaagaaaaagtaaaattacaTCTT
GAGCTGTGAAActttaaaaacaattaaacaaaacaaaaacaattatatgt
tggatttgtcaaaattatgacgtcataaaaatgagATTCGCTCACATGAG
ATNaatttgcaaaaaaaagtaaaattacatCTTGAGCTGTGAAActttaa
aaacaattaaacaaaacaaaaacaattatatgttggatttgtcaaaatta
tgacgtcataaaaatgagATTCGCTCACATGAGATGACAGTTGTTTTGAG
TAATGGAATTTCATATATTTGTCGTCATCGCCCTGTCATTGGTTCAAATT
GTGTGGGCCAATAAGAACGAGGATGTGGGTGTAGTGAGAGAGATCTGGTC
TAACGTGCATGGAAGTGATCTTCAAGATTTGTTAGCAGACTCGAGGTTTC
CACATCAACCGACTGTGGTTTCGTTCATCAAGAATTTCGATGCACCTCCT
GCATCACACCAGAAGAATATTGCACAaagagtcaaagGTTATTTCGTAGC
ACCACAGAAAGGAGAATACAAATTTTACAGTAGTTGTGGTGGTTCATGTG
AGGTCTTTCTTGGTTTGGATGGGACCGAGGGTGAAAACCATCGCATCATC
AACCAACAACGCTCAACGCGTAGAAACCAGTTTTTAAAGTATCCAGAGCA
AGTTTCACATACAGTCACGCTCAAGAAGGGACAGATCACTTATCTTGAAG
CCATTAATAAACAAGGTACCGATAGTGATAGCCTCAGTGTGGGTGTTGAG
CTACCAAATGGAGACAAATTGTTCCCAATTCCCCATGATCTTTTACGGAA
AAGTAAAAGTTCAGCACAAACTTACGTATCAAAGAAATCAACATCCCTCC
GGAGACGAAATCTTAAGTCAGGAAGTGGGGCCATCCTTGATTTAGAAGGA
AAACACTTCAAGAATAAGGATGCTTTAGAACCAGGAATAAACATTTTCCA
AGATTCAAAGGATGTTATGGATTCAGGCGATTTAGGTAGCGGTGATTCTG
AGGATAAAATAAGCGCAGTCGATAAAAATGCATTGAAGACAAGTGATATA
ATATCAAACGATGATATTGAAAGTATAAActtaagtgaaaataaaaaact
tacaaaTGACAAAAACAGCAAGACAGCTCACGAGAAAATGACTAAATCAC
CGGTTCAAGAGCTTACCGGAAGTGAACGTCAGGTAGTCGGCATAGGTGCT
GATCCTTTAACTCATGGCCATATGCTTGGACCCCAGGTCGGCCTCCCTTT
GATTCATCCACCGACGCGAGAAGACCACCATCCTGATGATATCACGTTAA
CCGGAGCTCATCTCGGTAATCTACCAGCTCAGCCGTTACGGCATACCGGT
AAAGTTGCTTTAGTCCCAGCTATTTTACATAAAACTGAATATTATGATCA
CGCAACGGGTTATTCCAGACCCGGAGAAACTCGGATCGAGCCGGTCATGA
ATGCACATCCGGTGGAAAATTGGAATCACGATGTAAATGCTGCAGGGGAT
CTGGAGCACGCCCTTGGCGAAATGGGTGGTCCTGTTGGATGCGGGCAACC
ACCTTGCGGTGCTCCAATACATAATGAATGCGCTATGCCACCCTGTGGCG
CCCCAATACATAATGAATGTGCAACGCCACCCTGTGGCGCCCCAATACAT
AATGAATGCGCTATGCCACCCTGTGGCGCCCCAATACATAATGAATGTGC
AACGCCACCCTGTGGCGCCCCAGCTGTGGTTCCTGTATGTCGGACTCCGC
CCTGCAATTTAGACCACGTGGATGTACATCCATTTCACGAGTCAGCACCT
CAACCTAAAAAGAAACCGGATATCGTGAAAGTAGAATTTGTTCCTGAAGA
AGCGGAAGGCATGAAAGCAGCAGGAAATACAAAAGTTGGGTCAAAGAAAG
GAGGCTCAGTCAGAGTCCAGTTCATTCCCGGTGAAGTCAAACAACCTGCA
AAGACTATGACACCTGAAGCAAGAGCTGGTCCTGCTAGTTCAAATCAGGC
GGTCACTCAACCGCCAAAGCAACAGCCGAAAGCGGCTTCAATATCGACCG
GTGCAATCGCATCGAAATTGAAAGACAAAATGGAGGGCAAGGAAGAGGTG
AAAGAACCTAAGAACGATCAACAACCACTGAAACAGCAGAAACAACCAGT
ACAACAGCAACGATATCAACAACCTCCACAACAATACAATGCACCATCAC
CACAACCAGAAATCCAAAACACGACTGGTCAGAAGCCAACAACAATGAAA
TACTCATATCAGACACAGCCTGACAAATC
Run BLAST on NCBI

transcript from alignment at sc0000086:510201..515675-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008621 ID=TCONS_00008621|Name=TCONS_00008621|organism=Clytia hemisphaerica|type=transcript|length=5475bp|location=Sequence derived from alignment at sc0000086:510201..515675- (Clytia hemisphaerica)
TTACTGCATGCATGAATGCACAGCACAATTGAATGAAAACGAGCTTTGCT
CAAGGTGAGTTTTCCGCGAGATTTGCAAAGAAAAAGTAAAATTACATCTT
GAGCTGTGAAACTTTAAAAACAATTAAACAAAACAAAAACAATTATATGT
TGGATTTGTCAAAATTATGACGTCATAAAAATGAGATTCGCTCACATGAG
ATNAATTTGCAAAAAAAAGTAAAATTACATCTTGAGCTGTGAAACTTTAA
AAACAATTAAACAAAACAAAAACAATTATATGTTGGATTTGTCAAAATTA
TGACGTCATAAAAATGAGATTCGCTCACATGAGATGACAGTTGTTTTGAG
TAATGGAATTTCATATATTTGTCGTCATCGCCCTGTCATTGGTTCAAATT
GTGTGGGCCAATAAGAACGAGGATGTGGGTAAGTGTTTGAAGCTTGGGAT
GTTTGTGAAGGCTTTATAATGTATGTAGGGATACTCTTGACATTTCCAGA
TTACGCAACATTCTCGGAGCTATCCAAAAGGTCAAGAAACTGAGTTCGAG
AAGACGTTTATCTGCACCCAATAGTCCATTTAAAGATCCTCAAATACTTG
CTATCATATCGATTGGAGTTTACCAAAGACGGCAAAGTCAACAAGTTTGA
GGCTGGAGCTTCAAGGCCACTCAGATATAACTACACTACTGTAAACTGGA
GGTGGGCTTGGATAGGGAGAACAGCTTAATGTATAACACAAGTGCAAGTA
GCCATCTTGATCTTTGAGAGTATTACTTGTATATCAGAACTAAAAAATAG
CTCTTTGAAATCTCGATGTTTTCAAATTCGTAAGCTTTAAAAACACGTGA
AAACACAAACTCTCGAAAATAGAGGAGAATTGCAGAAAACTGATATTTAC
GAGATTTGATAACTTTGTTTATAGGTGTAGTGAGAGAGATCTGGTCTAAC
GTGCATGGAAGTGATCTTCAAGATTTGTTAGCAGACTCGAGGTTTCCACA
TCAACCGACTGTGGTTTCGTTCATCAAGAATTTCGATGCACCTCCTGCAT
CACACCAGAAGAATATTGCACAAAGAGTCAAAGGTAGGTGGAAAATCTGC
CATCGAATTTGTCCTTACAGCTTTTGTAAAAAGCTTGATTTCTTTTCGAT
TTTTTATGAAATTTACAGTCATTTTAAAGATTACGTTAGTTTGGTCAATT
TTAGTAGCATTGAAAGACAATTTCTAAAAAATTCTTCAAGTCAACAAATT
TGGCCAATCTTTTGGAACATGGCCAAATTTGGCAGCATATTTGCGCTTTT
CATGTCTAAAGAGTTACCCCAAGTAATGTTATTATCTAAGTTATGTTCTA
AAGATTAGATTCCCCCTGCCAATATCAAGTATAGCCATCAAGGAGTGTGT
GTTGATCTACGGAATCTTATCTTCATTTAATCTTTAGTATGCTAGTGGGG
AAGATAACAAACATGGTCTTTTGTTGAATGTGGCTTGGCTTGTCAAAATT
GTAGAACCAGCAGTTTATAAATGTAATATGAGTTCTTCTTATAGCTTGAA
TAATGCAATTATTACCGATCTTCTTTCAATACAGGTTATTTCGTAGCACC
ACAGAAAGGAGAATACAAATTTTACAGTAGTTGTGGTGGTTCATGTGAGG
TCTTTCTTGGTTTGGATGGGACCGAGGGTGAAAACCATCGCATCATCAAC
CAACAACGCTCAACGCGTAGAAACCAGTTTTTAAAGTAAGTCTGTATGTA
AAGAAAATCCTTTCTCGTGTTTCTGGGCTGACAGTTTTTTTGTTTCTTTT
TTTTGGAGGGGGAGACCTCTGAGGGTATAAAATAAGGCATACTATACTTT
TTTGTGTTGTAAAATGGTATCTNGGAAGGGGAAGACCTCTGATGGTATAA
AATAAGGCATACTATACTTTTCTGTGTTATAAAATGGTATCTGCAAAGAT
CACCACCGTGAGATTTGATAATCAAGATTCTCGATTAAAGTTTGGAGATT
ACTATATTCTATTGAAGTAAGAGAGTGTGGTATAGCAAAATCGAAAGTTC
TTTGATCATATGGGCCGAGATATAGATGAAGGTACCTAATCTCATTTGCT
ACTAAAGAAAAGATGTCAAGCAAGGTTTTTGTTCAAATTTCAGGTATCCA
GAGCAAGTTTCACATACAGTCACGCTCAAGAAGGGACAGATCACTTATCT
TGAAGCCATTAATAAACAAGGTACCGATAGTGATAGCCTCAGTGTGGGTG
TTGAGCTACCAAATGGAGACAAATTGTTCCCAATTCCCCATGATCTTTTA
CGGAAAAGTAAAAGTTCAGGTGAGAAATTAACTATTTCATTTTAAGTGAA
AGAGCGAACGATGTTTTGGATCGCACAACCTAAAAAACTCAAACAGCCAA
TGATAAGCGAACTTTCTAATAACAGAGAAGTTACATTTATAAATAGATAG
ACGTAGCTGTAATACCATAGCAACGCTAGGGTGCAGGCGTAAAGGTTCCT
TTAGGAATATTTGATCCAGTAGAGGGGCAACTATTTTTTGAATTATCTCA
ACACGATATTGTAAGTTAAGAATGCTGAATTTCTCTCACTTTCAGCACAA
ACTTACGTATCAAAGAAATCAACATCCCTCCGGAGACGAAATCTTAAGTC
AGGAAGTGGGGCCATCCTTGATTTAGAAGGAAAACACTTCAAGAATAAGG
ATGCTTTAGAACCAGGAATAAACATTTTCCAAGATTCAAAGGATGTTATG
GATTCAGGCGATTTAGGTAGCGGTGATTCTGAGGATAAAATAAGCGCAGT
CGATAAAAATGCATTGAAGACAAGTGATATAATATCAAACGATGATATTG
AAAGTATAAACTTAAGTGAAAATAAAAAACTTACAAATGACAAAAACAGC
AAGACAGCTCACGAGAAAATGACTAAATCACCGGTTCAAGAGCTTACCGG
AAGTGAACGTCAGGTAGTCGGCATAGGTGCTGATCCTTTAACTCATGGCC
ATATGCTTGGACCCCAGGTCGGCCTCCCTTTGATTCATCCACCGACGCGA
GAAGACCACCATCCTGATGATATCACGTTAACCGGAGCTCATCTCGGTAA
TCTACCAGCTCAGCCGTTACGGCATACCGGTAAAGTTGCTTTAGTCCCAG
CTATTTTACATAAAACTGAATATTATGATCACGCAACGGGTTATTCCAGA
CCCGGAGAAACTCGGATCGAGCCGGTCATGAATGCACATCCGGTGGAAAA
TTGGAATCACGATGTAAATGCTGCAGGGGATCTGGAGCACGCCCTTGGCG
AAATGGGTGGTCCTGTTGGATGCGGGCAACCACCTTGCGGTGCTCCAATA
CATAATGAATGCGCTATGCCACCCTGTGGCGCCCCAATACATAATGAATG
TGCAACGCCACCCTGTGGCGCCCCAATACATAATGAATGCGCTATGCCAC
CCTGTGGCGCCCCAATACATAATGAATGTGCAACGCCACCCTGTGGCGCC
CCAGCTGTGGTTCCTGTATGTCGGACTCCGCCCTGCAATTTAGACCACGT
GGATGTACATCCATTTCACGAGTCAGCACCTCAACCTAAAAAGAAACCGG
ATATCGTGAAAGTAGAATTTGTTCCTGAAGAAGCGGAAGGCATGAAAGCA
GCAGGTTTGTAAACTGTCAAATATCATATGTGAAAACAGCCGAAAATAAA
GTCATTTAGAAATCCAAAATTGACCTATAATCCTAGTTTTGTTTTTAAGT
AAAAACAGCTCCTGAACTATATGAATATTGAAAGACAGTGATCAATAGTA
GGTTGTTACATAGCTCTCTTTTCTTTTTATTAACCGCCTTCACTCTGGGT
TTGACTAAATGTTTCTAATTTTGTTCAAATGAACTATGACACCAAATTAT
AGGAAATACAAAAGTTGGGTCAAAGAAAGGAGGCTCAGTCAGAGTCCAGT
TCATTCCCGGTGAAGTCAAACAACCTGCAAAGACTATGACACCTGAAGCA
AGAGCTGGTCCTGCTAGTTCAAATCAGGCGGTCACTCAACCGCCAAAGCA
ACAGCCGAAAGCGGCTTCAATATCGACCGGTGCAATCGCATCGAAATTGA
AAGACAAAATGGAGGGCAAGGAAGAGGTATGTTACAAAATATGAACTTCT
AGAATCATATGAGATCAGGCGGATTCAGCTAAAACTTCGCCTAAGAATAA
TCCGAGCCTAATGTTTGAAAATTTTTCAGAAAATGTTGATTTTAAGCCAC
TTTAAGCCTTTCATAATAAAGGAACTAATTTTACTTAAAACATTAGTTTT
AATATGATATTTTTGGAAAAAGAACAACCGAGCTAAAGCAAAAATTTCTT
TTTAAGGCGTGTATGCATGAATAACAACGTTTCCAGTCAGAGGGGTTTGA
AATGAATTTACATCAGGAATTCTTTCATAGAGTACAGTCTCTCTAACTCG
AATACGCACAGGGAATTAGACTAGTTCTATAAGGGTTTATTGTCCGAGTT
AAGCAGGATATTCGAGTTATGGAGGTTCGAGTTGAGAAGACTCTACATTA
TTTTATTCCCTTCTCACAGGGAGTACAGTCTCTCTAACTCGAATACGCAC
AGGGAATTAGACTAGTTCTATAAGGGTTTATTGTCCGAGTTAAGCAGGAT
ATTCGAGTTATGGAGGTTCGAGTTGAGAAGACTCTACATTATTTTATTCC
CTTCTCACAGGGAGTACAGTCTCTCTAACTCGAATACGCACAGAGAATTA
GAGTAGTTCTATAAGGGTTTATTGTCCGAGTTAAGCAGGATATTCGAGTT
ATGGAGGTTCGAGTTGAGAAGACTCTACATTATTTTATTCCCTTCTCACA
GGTGAAAGAACCTAAGAACGATCAACAACCACTGAAACAGCAGAAACAAC
CAGTACAACAGCAACGATATCAACAACCTCCACAACAATACAATGCACCA
TCACCACAACCAGGTCAGTTTATTACAATATTTCAAGGGCGGCGCCCTCC
TCTAACCTCCTTCTGATAGATAACTTTTAAAAGAGGAGCCTTCTGGTTTC
TTCTGACTGCGGTCGTATATTCTCTTTTTACACATCTCATATTAAACTAT
GTTCTACCCTAGTCGTATAAGGTCAAAAATCAAATAATCCTAATCATTTT
AATTCATCGGAATTCATTGCTTGTGGTTCTAATCAAAGTAATCGAACCTT
TATATTTCCTTGTTATTTTTATTTGAAATGCAAGGAGATGATTATTTTTA
GGTCATGTTTCTTTTTATACTTTTTGAAATTGTCTAGTACTACTGAATTC
TAATCTTGTAAGTTTTCAAAATTGCTGAGTCAGATAATGTAGAAACAAAA
TTCAGTTGCGTTTGCAACAGTTTGCCTTGAATATCTTTCTAACCAAACTT
CACAGAAATCCAAAACACGACTGGTCAGAAGCCAACAACAATGAAATACT
CATATCAGACACAGCCTGACAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004822XLOC_004822Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008621-exon-sc0000086-1575043694:515248..515675TCONS_00008621-exon-sc0000086-1575043694:515248..515675Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:514593..514751TCONS_00008621-exon-sc0000086-1575043694:514593..514751Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:513941..514091TCONS_00008621-exon-sc0000086-1575043694:513941..514091Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:513357..513532TCONS_00008621-exon-sc0000086-1575043694:513357..513532Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:512022..513080TCONS_00008621-exon-sc0000086-1575043694:512022..513080Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:511550..511773TCONS_00008621-exon-sc0000086-1575043694:511550..511773Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:510713..510824TCONS_00008621-exon-sc0000086-1575043694:510713..510824Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1575043694:510201..510270TCONS_00008621-exon-sc0000086-1575043694:510201..510270Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:515248..515675TCONS_00008621-exon-sc0000086-1510915933:515248..515675Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:514593..514751TCONS_00008621-exon-sc0000086-1510915933:514593..514751Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:513941..514091TCONS_00008621-exon-sc0000086-1510915933:513941..514091Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:513357..513532TCONS_00008621-exon-sc0000086-1510915933:513357..513532Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:512022..513080TCONS_00008621-exon-sc0000086-1510915933:512022..513080Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:511550..511773TCONS_00008621-exon-sc0000086-1510915933:511550..511773Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:510713..510824TCONS_00008621-exon-sc0000086-1510915933:510713..510824Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1510915933:510201..510270TCONS_00008621-exon-sc0000086-1510915933:510201..510270Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:515248..515675TCONS_00008621-exon-sc0000086-1491911889:515248..515675Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:514593..514751TCONS_00008621-exon-sc0000086-1491911889:514593..514751Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:513941..514091TCONS_00008621-exon-sc0000086-1491911889:513941..514091Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:513357..513532TCONS_00008621-exon-sc0000086-1491911889:513357..513532Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:512022..513080TCONS_00008621-exon-sc0000086-1491911889:512022..513080Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:511550..511773TCONS_00008621-exon-sc0000086-1491911889:511550..511773Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:510713..510824TCONS_00008621-exon-sc0000086-1491911889:510713..510824Clytia hemisphaericaexon
TCONS_00008621-exon-sc0000086-1491911889:510201..510270TCONS_00008621-exon-sc0000086-1491911889:510201..510270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:510201..515675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128972	0	0	0	0	0	0	0.264794	0.630609	0.559015	1.76838	0.249665	0	1.67063	2.87626	3.89138	1.93683	1.6324	0	0	1.63836	0.000636452	1.16077	1.01815	1.57143	1.83544	0	0	0	0.0291326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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