TCONS_00008559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008559
Unique NameTCONS_00008559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008559 ID=TCONS_00008559|Name=TCONS_00008559|organism=Clytia hemisphaerica|type=transcript|length=4151bp
TTCAGTACTGTTTAAAAGTCGctaattgtttttaaattaattaaagaaat
ttaaaatggTTAATTAAAGAAATGTGTTTTTGGTAATCCTGACAACGCAA
GGAGCCAGGAAAAAAGACAGACAATAACTGATTGAAACAATTTGAAGAAA
GATCTTCAAAACATTCTCAAAATGagtaaatcgaaaaaaaaattattgta
aatGAAAATTGCGGTTGAACCGATATGAAGCCTATAAGGTTTGATTTTGG
TCTTAACCTCCTGGTGTGTTTGGTCTTCGTAAATTTTGCTTGGGTCTTTG
GTGAATATCAAGataccATTCTACGAATCGACCAGGACGAAGCAAATATT
CTCCAGGACATTTTACCGGACTTAAATTTTGTTCATGGGATCATTGCAAA
ACACagtaaaaaagaaaatgcaGAACGCCGTGAAAAAATACCgaacaaac
aacaaaaacaaagtaGACATTCACTGGACGGACATCATTCGCCATCCTTT
ATTAAGgagaaaaaattattgataaattTCGATGGAGTTGATAAAGATTT
GAGGCGAGAAACCTCCAAGACGAGAGCAGCTACACCAAACGAATTTCGAC
TTCACGAGATAGATTTCAATAAACTGTTACAGAAACTTCTGAAAAATGAT
ATTCCAGCCAATGAGAAACGGAAGATAAAAAAGCGAACgaagaaagcaaa
gaaaagaaaacaaattcgACTGTCAACGAAACCAAAAAACTTTACTCAAA
GAACTGTAACCCCATTCGTAAACCGAATCACAAATCATACGAGAAGAAGA
CCTTTTCACAATGCTATACCAAAAGAAAGGGGTAAGAAAGTAAGCAACCT
GTTAAATGCAGCCTTCCAATCAGTTCCCACAGTACTCGTGTCCAACAGAA
AGCGTTTAATAAAACCTACAGATCAATTTTTAGtactttttcataaaaac
acATCAATGAATTCAATAGGGAGACAAAGAATAACCCATTTGAATAATCT
CACCAAAATTGCTTCCGATGAATTTACAGTGCTGGATGATGAGAAAAAGG
catttcataaatttgaaaGTATATCTGAAATTGATACTGACTTACCTTCA
ACTGCGACTGAAAGGGATAAAAGTATCGctgatttgaatattttgactGG
AGTAAAAAAGTCTGCAGGTACTGACAAAATAACTCAATATCCAAACGCTG
AAAAGAAGTTTGCTTTACGCAATTCAAAGGAGCAGAGCTTCCAATCAGAA
CAAAGAGAACAGAGACCACGTGACATGATAAAGAATCAAGCGCCAAACAC
TAACATTTCAACTAAGGCAAACTCTTCCAATTTTGATAACAGGGCTAATA
AATTTACGGAGAGCGAAGGGAAAGAAATTATAAACTCCATCGAAGATATC
GGTAAATCTTTAAGCTCAGTCAAATCGAACGTGACCGATGAGAACGAACC
TATACGTAATGAAACGAACGTTAAAATGCTTTCCGATTTCTCCAAAACAC
CATCAAATATTAATGACACGAGGAAAGAGTTTGGAACGGGGAATCTTACA
ACGCCTTTGACAGTGAAAGATGATGGAAAATTGACCAATGAGAGTATTTT
GAGGACTATGATTAATAATGCAACAAATTCTATCCCACCTGAAAAAGTAA
CTCAACTCAATTCAAAGAATGGTTCGACTTCTGGAATTGATGTCAGTCTG
AACAATAAATCAACAGTATATACAGATAGAAATAGAGAAGCAAACACTTC
AAGTGGTGTCAACCCGGCTTCTACACTATCCGGGAATTCAACGAAACCAC
TTGCCATAGACAATTCAACAATGTCAACAGAATACCATTACAACGTTAAA
TCTGACAATGATAATCTATTACTAGTAAATTCTACCAAATATCAAAAGAA
TGAAAATGAGAAGTTCCCACAATCCGTAGATCTTTTAAAGCCACAAAACC
AAACAACAGAAGGTATTTCGATTAACAATTCAAGTATCAATCAACCATTC
AGCAACTACCAAGCGAATCCAACTCCATATGTCGTTTCAACTGGTGGATC
GTTCCTGGAAAATCAATCTTCAGAAAACATATACACCAATACAAGCAGCG
ACCCCAATACAAGAAACTCAACCTCAGAAAATTTAACGATAAACAATGCT
CTAGAACCACAAGCGAATTCATCAATTTCAAACCAAACAACGTCAAATCT
TCAACAGCCCCCTGATGAAGTAGGAGCTGAGGATCATTCAGCTGCACAAT
ATTTTGACAAACCGACCAATGAAGATATGATGGCAATACAGAATCTACCT
CAAGAAAATCTAAACGTTCCATTGATACCACCAGCTTTGGAAAACGCAAA
TACCAAAACCAACAATGCACAAATATCAGATCCATATTCAATGGATAATC
AAGGAGGCCAAATCACAGAACCAAAACTAATAAACAATTCAGATGAAACG
TTGAAGTCTCCAACACAGGAACAAATGACATTTTCAACATCAAACACCAC
AACAGTAGGTGCAAACATTGATATTCCAGAACATAAGGCAAATAATACAT
CGTCACTCAAAAACAGTGAATATCCAATGAATCCAACTGCAGTTTTATCC
CCAGAAAAGAAAACCAACGATTCGTTCACCAATGTAGAGGATATTATGGA
ACTANGGAAAACGACAATACCAAAACCAACAATGCACAAATATCAGATCC
ATATTCAACGGATAATCAAGGAGGCCATATCACAGAACCAAAACGAATAA
ACAATTCAGATGAAACGTTGAAGTCTCCAACGCAGGAACAAATGACATTT
TCAACATCAAACACCACAACAGTAGGTGAAAACATTGATATTCCAGAGCA
TAAGGCAAATAATACATCGTCACTCAAAAACAGTGAATACCCAATGAATC
CAACTGCAATTTTATCCCCAGAAAAGAAAACCAATGACTTGTTCACCAAT
GTAGAGGATATAATGGAATTGCCAGCATCATTTAACACCACGAAAACAAA
CAATTCTTCTATACAGCTCCAACGCAAGAATATAATCCCAACGCCCAGCC
CACGTGACCGTCTAGCCCGTGAATATATTCCAATGTATGCGCCCACAGTC
TATAGTGAAGATGTTAACGACTTTCTGGATGGGTCTGTAGTCCCAAGACA
GCTAAAACCAGATTCCAGAGTAAGCGAGACGACTGGGCTAGGGCAAAGTG
ACGTAGCCTCGCTGACTAGCTTCTTAGCTAACGAACGAATGGAGGAACAA
ACGATAGCGAATGAGGCGCAGAGCGTAACAAGAATTCATCCGCATCGTGT
TACGGCGGAGAAAAAGGAGCAGGAGACGCCAGTACGACGGGATAAACAAG
AACACCACGATAGCATGCAGACTGATGACATCAAACTGCTGAAAGACGCG
ATCAATGTTGGCGAAAAATCACTtctcaatttcataaaaaatcatttgaa
CCAGAAAGACAAAACTCTGATGAAACTGAAGGCTGTTGAAGATTCTCTTG
AAAGTAAATTAGTTGgtaagatgaaacataaaagaaaTATAACACAGTCT
TTAGATGAGGCTACCGCGACACTGGAACAAGACTCGAAATCTGATTCCGA
GTCAAACGAGTCAGATGAAAGGAAAAATCTCCAAGAAGAAGCGAATCAAG
AATCATCAAAGACAGATATAGAAGAATCACCGAACAAGGATACTAAAGTT
TATTCTGAGCCTCAAGAAAACTCAGATAATGgtgaaacaaaaaatcaaat
taaaatggCTGATATCAAAGCAGAGATTCAGGCCGATAAGTCTGAATTAG
GCGTTCCATCAAGTCATCTGGAAACTGaaagaaaggaggaaatttctGCT
CAGAATTCAACAGTACCTTCTTCTCTAGACAGTAACGATAATTCAACTTT
ACTGTCAGAAACATCTAAGGTTGAAGAAGGTAAAGAGTTTTCAAACGAAT
CGGAGGAACAGAAAAGTCAAAGTGAAAATGTAAAGCCAGCCCATGATGAA
TCTGATGGAAGTTCCCAGAGCCCTGGGCCTGGAGAATCTACACCAATGGT
GAAGATGGACAGACAGAATGCTGGAAATATCACTTCGTTGAACGAAGTTG
TGGCTAGGGCAAATAAGAATTCATCCATCCAATCAAAGCCCCATACATCC
A
Run BLAST on NCBI

transcript from alignment at sc0000086:587035..592490+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008559 ID=TCONS_00008559|Name=TCONS_00008559|organism=Clytia hemisphaerica|type=transcript|length=5456bp|location=Sequence derived from alignment at sc0000086:587035..592490+ (Clytia hemisphaerica)
TTCAGTACTGTTTAAAAGTCGctaattgtttttaaattaattaaagaaat
ttaaaatggTTAATTAAAGAAATGTGTTTTTGGTAATCCTGACAACGCAA
GGAGCCAGGAAAAAAGACAGACAATAACTGATTGAAACAATTTGAAGAAA
GATCTTCAAAACATTCTCAAAATGagtaaatcgaaaaaaaaattattgta
aatGAAAATTGCGGTTGAACCGATATGAAGCCTATAAGGTTTGATTTTGG
TCTTAACCTCCTGGTGTGTTTGGTCTTCGTAAATTTTGCTTGGGTCTTTG
GTGAATATCAAGGTAAATGATCAATATGTACAgtatttataaagaaaaat
gtttttaaatgtaATACCATAACGGCAGAAGACTATGTATagtatttttt
tgagttttccaTCCAGCCGATGGAAGAAattgaattgctattttagcttT
AAGCGCTCTGATTGGCAAGAAGGGGTCCGTTTGCTGCAAGTTGAATAGAT
GAACTTTAAACTATACATTCTGATGGGGGATATGATATGTAGAGACTTTC
ATTTGAGCCTTAGTAGTTCTTATTCTgagaaaacataaaaaagttGGAGC
AAAGGAATTCAAATCAGGAATGACATttgagatttgatttttttttcaga
taccATTCTACGAATCGACCAGGACGAAGCAAATATTCTCCAGGACATTT
TACCGGACTTAAATTTTGTTCATGGGATCATTGCAAAACACagtaaaaaa
gaaaatgcaGAACGCCGTGAAAAAATACCgaacaaacaacaaaaacaaag
taGACATTCACTGGACGGACATCATTCGCCATCCTTTATTAAGgagaaaa
aattattgataaattTCGATGGAGTTGATAAAGATTTGAGGCGAGAAACC
TCCAAGACGAGAGCAGCTACACCAAACGAATTTCGACTTCACGAGATAGA
TTTCAATAAACTGTTACAGAAACTTCTGAAAAATGATATTCCAGCCAATG
AGAAACGGAAGATAAAAAAGCGAACgaagaaagcaaagaaaagaaaacaa
attcgACTGTCAACGAAACCAAAAAACTTTACTCAAAGAACTGTAACCCC
ATTCGTAAACCGAATCACAAATCATACGAGAAGAAGACCTTTTCACAATG
CTATACCAAAAGAAAGGGGTAAGAAAGTAAGCAACCTGTTAAATGCAGCC
TTCCAATCAGTTCCCACAGTACTCGTGTCCAACAGAAAGCGTTTAATAAA
ACCTACAGATCAATTTTTAGtactttttcataaaaacacATCAATGAATT
CAATAGGGAGACAAAGAATAACCCATTTGAATAATCTCACCAAAATTGCT
TCCGATGAATTTACAGTGCTGGATGATGAGAAAAAGGcatttcataaatt
tgaaaGTATATCTGAAATTGATACTGACTTACCTTCAACTGCGACTGAAA
GGGATAAAAGTATCGctgatttgaatattttgactGGAGTAAAAAAGTCT
GCAGGTACTGACAAAATAACTCAATATCCAAACGCTGAAAAGAAGTTTGC
TTTACGCAATTCAAAGGAGCAGAGCTTCCAATCAGAACAAAGAGAACAGA
GACCACGTGACATGATAAAGAATCAAGCGCCAAACACTAACATTTCAACT
AAGGCAAACTCTTCCAATTTTGATAACAGGGCTAATAAATTTACGGAGAG
CGAAGGGAAAGAAATTATAAACTCCATCGAAGATATCGGTAAATCTTTAA
GCTCAGTCAAATCGAACGTGACCGATGAGAACGAACCTATACGTAATGAA
ACGAACGTTAAAATGCTTTCCGATTTCTCCAAAACACCATCAAATATTAA
TGACACGAGGAAAGAGTTTGGAACGGGGAATCTTACAACGCCTTTGACAG
TGAAAGATGATGGAAAATTGACCAATGAGAGTATTTTGAGGACTATGATT
AATAATGCAACAAATTCTATCCCACCTGAAAAAGTAACTCAACTCAATTC
AAAGAATGGTTCGACTTCTGGAATTGATGTCAGTCTGAACAATAAATCAA
CAGTATATACAGATAGAAATAGAGAAGCAAACACTTCAAGTGGTGTCAAC
CCGGCTTCTACACTATCCGGGAATTCAACGAAACCACTTGCCATAGACAA
TTCAACAATGTCAACAGAATACCATTACAACGTTAAATCTGACAATGATA
ATCTATTACTAGTAAATTCTACCAAATATCAAAAGAATGAAAATGAGAAG
TTCCCACAATCCGTAGATCTTTTAAAGCCACAAAACCAAACAACAGAAGG
TATTTCGATTAACAATTCAAGTATCAATCAACCATTCAGCAACTACCAAG
CGAATCCAACTCCATATGTCGTTTCAACTGGTGGATCGTTCCTGGAAAAT
CAATCTTCAGAAAACATATACACCAATACAAGCAGCGACCCCAATACAAG
AAACTCAACCTCAGAAAATTTAACGATAAACAATGCTCTAGAACCACAAG
CGAATTCATCAATTTCAAACCAAACAACGTCAAATCTTCAACAGCCCCCT
GATGAAGTAGGAGCTGAGGATCATTCAGCTGCACAATATTTTGACAAACC
GACCAATGAAGATATGATGGCAATACAGAATCTACCTCAAGAAAATCTAA
ACGTTCCATTGATACCACCAGCTTTGGAAAACGCAAATACCAAAACCAAC
AATGCACAAATATCAGATCCATATTCAATGGATAATCAAGGAGGCCAAAT
CACAGAACCAAAACTAATAAACAATTCAGATGAAACGTTGAAGTCTCCAA
CACAGGAACAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGCA
AACATTGATATTCCAGAACATAAGGCAAATAATACATCGTCACTCAAAAA
CAGTGAATATCCAATGAATCCAACTGCAGTTTTATCCCCAGAAAAGAAAA
CCAACGATTCGTTCACCAATGTAGAGGATATTATGGAACTANGGAAAACG
ACAATACCAAAACCAACAATGCACAAATATCAGATCCATATTCAACGGAT
AATCAAGGAGGCCATATCACAGAACCAAAACGAATAAACAATTCAGATGA
AACGTTGAAGTCTCCAACGCAGGAACAAATGACATTTTCAACATCAAACA
CCACAACAGTAGGTGAAAACATTGATATTCCAGAGCATAAGGCAAATAAT
ACATCGTCACTCAAAAACAGTGAATACCCAATGAATCCAACTGCAATTTT
ATCCCCAGAAAAGAAAACCAATGACTTGTTCACCAATGTAGAGGATATAA
TGGAATTGCCAGCATCATTTAACACCACGAAAACAAACAATTCTTCTATA
CAGCTCCAACGCAAGAATATAATCCCAACGCCCAGCCCACGTGACCGTCT
AGCCCGTGAATATATTCCAATGTATGCGCCCACAGTCTATAGTGAAGATG
TTAACGACTTTCTGGATGGGTCTGTAGTCCCAAGACAGCTAAAACCAGAT
TCCAGAGTAAGCGAGACGACTGGGCTAGGGCAAAGTGACGTAGCCTCGCT
GACTAGCTTCTTAGCTAACGAACGAATGGAGGAACAAACGATAGCGAATG
AGGCGCAGAGCGTAACAAGAATTCATCCGCATCGTGTTACGGCGGAGAAA
AAGGAGCAGGAGACGCCAGTACGACGGGATAAACAAGGTAACTTAGGTTA
TTTGATCCTAgtataaagaaaaatctttatttttcgaatATGTCATTTTA
GTTCGAACGAATACAATGCCTTCAGTTGGTTAGGTCTCTGAATTAAGGGA
AAATTACTGGTCCCTTGGAAATCATATTGCAGCAAGTCAAAGTGTtcctt
taaccctttaagtgccacggtcattttttctaagttttttaaagaaaatc
gctagttcaaactttaaaggcttatatctcgagatctagaaggagttaga
agctcgttcataactcgttggatagcttagagtctcctctttctgcTGCG
CGGACCTACCTGAATGATATAAAGATGcccaaaacttcaaattaacTCGC
TGGATGACAGTATCAAGTAAAACAGGgcaaaatttggaggttcttggatc
actcgttggacaaaaatggtcaaaaaacgatcaaaatctttaaaaaatgg
atttttgtcaaattttagcatttttggcttaaaatgttGCTGATAAGACT
GActtatgattttttattttgcttgaccatgaagcccaatccaattctta
cgagttagaccaaaaatgacgattctCAAACTGaacattacaggagggct
tcgccatCCTTCATAGCctatgtctgatatatacgacattggcacttaaa
gggttaatattttatattttcgttTAAATGTAGAACACCACGATAGCATG
CAGACTGATGACATCAAACTGCTGAAAGACGCGATCAATGTTGGCGAAAA
ATCACTtctcaatttcataaaaaatcatttgaaCCAGAAAGACAAAACTC
TGATGAAACTGAAGGCTGTTGAAGATTCTCTTGAAAGTAAATTAGTTGgt
aagatgaaacataaaagaaaTATAACACAGTCTTTAGATGAGGCTACCGC
GACACTGGAACAAGACTCGAAATCTGATTCCGAGTCAAACGAGTCAGATG
AAAGGAAAAATCTCCAAGAAGAAGCGAATCAAGAATCATCAAAGACAGAT
ATAGAAGAATCACCGAACAAGGATACTAAAGTTTATTCTGAGCCTCAAGA
AAACTCAGATAATGgtgaaacaaaaaatcaaattaaaatggCTGATATCA
AAGCAGAGATTCAGGCCGATAAGTCTGAATTAGGCGTTCCATCAAGTCAT
CTGGAAACTGaaagaaaggaggaaatttctGCTCAGAATTCAACAGTACC
TTCTTCTCTAGACAGTAACGATAATTCAACTTTACTGTCAGAAACATCTA
AGGTTGAAGAAGGTAAAGAGTTTTCAAACGAATCGGAGGAACAGAAAAGT
CAAAGTGAAAATGTAAAGCCAGCCCATGATGAATCTGATGGAAGTTCCCA
GAGCCCTGGGCCTGGAGAATCTACACCAATGGTGAAGATGGACAGACAGA
ATGCTGGAAATATCACTTCGTTGAACGAAGTTGTGGCTAGGGCAAATAAG
GTAAACAAATCGGTAAGGAAAAAAAGGTTATTTTTCAATCGCAAACGAAt
gtatgttttcttttcttcgtATTTATTACTTTGAAATGTTTGAAAGATGT
TGACTTTTGTAGTCGATTATAACAGCACCAGGTACAGTTTATCCATCACG
AGATACGAGGTCTTCGAATGTGTTCTTCCTTTTTCTAGTTCCTCACTTTT
AATCGTCGTCTGTGGACTGACAGAGTGTTTTGTCAGTGATATCCCATTAA
TCTGTAATGAATTTGCGTTTAGAATTCATCCATCCAATCAAAGCCCCATA
CATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004792XLOC_004792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008559-exon-sc0000086-1491911889:587035..587346TCONS_00008559-exon-sc0000086-1491911889:587035..587346Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1510915933:587035..587346TCONS_00008559-exon-sc0000086-1510915933:587035..587346Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1575043694:587035..587346TCONS_00008559-exon-sc0000086-1575043694:587035..587346Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1491911889:587684..590721TCONS_00008559-exon-sc0000086-1491911889:587684..590721Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1510915933:587684..590721TCONS_00008559-exon-sc0000086-1510915933:587684..590721Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1575043694:587684..590721TCONS_00008559-exon-sc0000086-1575043694:587684..590721Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1491911889:591418..592184TCONS_00008559-exon-sc0000086-1491911889:591418..592184Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1510915933:591418..592184TCONS_00008559-exon-sc0000086-1510915933:591418..592184Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1575043694:591418..592184TCONS_00008559-exon-sc0000086-1575043694:591418..592184Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1491911889:592457..592490TCONS_00008559-exon-sc0000086-1491911889:592457..592490Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1510915933:592457..592490TCONS_00008559-exon-sc0000086-1510915933:592457..592490Clytia hemisphaericaexon
TCONS_00008559-exon-sc0000086-1575043694:592457..592490TCONS_00008559-exon-sc0000086-1575043694:592457..592490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:587035..592490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0789872	0	0.0549648	0.150801	0.23736	3.56515	3.93652	0.26321	0.431544	2.16161	1.14226	1.33897	1.20091	0.868666	2.70681	1.34053	1.61009	0	0	0.613336	0.81561	0.398189	0.83882	1.45807	1.24292	0.0773985	0.0800089	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top