XLOC_004792 (gene) - C. hemisphaerica

Overview
NameXLOC_004792
Unique NameXLOC_004792
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000086:587035..592490+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004792 ID=XLOC_004792|Name=XLOC_004792|organism=Clytia hemisphaerica|type=gene|length=5456bp|location=Sequence derived from alignment at sc0000086:587035..592490+ (Clytia hemisphaerica)
TTCAGTACTGTTTAAAAGTCGctaattgtttttaaattaattaaagaaat
ttaaaatggTTAATTAAAGAAATGTGTTTTTGGTAATCCTGACAACGCAA
GGAGCCAGGAAAAAAGACAGACAATAACTGATTGAAACAATTTGAAGAAA
GATCTTCAAAACATTCTCAAAATGagtaaatcgaaaaaaaaattattgta
aatGAAAATTGCGGTTGAACCGATATGAAGCCTATAAGGTTTGATTTTGG
TCTTAACCTCCTGGTGTGTTTGGTCTTCGTAAATTTTGCTTGGGTCTTTG
GTGAATATCAAGGTAAATGATCAATATGTACAgtatttataaagaaaaat
gtttttaaatgtaATACCATAACGGCAGAAGACTATGTATagtatttttt
tgagttttccaTCCAGCCGATGGAAGAAattgaattgctattttagcttT
AAGCGCTCTGATTGGCAAGAAGGGGTCCGTTTGCTGCAAGTTGAATAGAT
GAACTTTAAACTATACATTCTGATGGGGGATATGATATGTAGAGACTTTC
ATTTGAGCCTTAGTAGTTCTTATTCTgagaaaacataaaaaagttGGAGC
AAAGGAATTCAAATCAGGAATGACATttgagatttgatttttttttcaga
taccATTCTACGAATCGACCAGGACGAAGCAAATATTCTCCAGGACATTT
TACCGGACTTAAATTTTGTTCATGGGATCATTGCAAAACACagtaaaaaa
gaaaatgcaGAACGCCGTGAAAAAATACCgaacaaacaacaaaaacaaag
taGACATTCACTGGACGGACATCATTCGCCATCCTTTATTAAGgagaaaa
aattattgataaattTCGATGGAGTTGATAAAGATTTGAGGCGAGAAACC
TCCAAGACGAGAGCAGCTACACCAAACGAATTTCGACTTCACGAGATAGA
TTTCAATAAACTGTTACAGAAACTTCTGAAAAATGATATTCCAGCCAATG
AGAAACGGAAGATAAAAAAGCGAACgaagaaagcaaagaaaagaaaacaa
attcgACTGTCAACGAAACCAAAAAACTTTACTCAAAGAACTGTAACCCC
ATTCGTAAACCGAATCACAAATCATACGAGAAGAAGACCTTTTCACAATG
CTATACCAAAAGAAAGGGGTAAGAAAGTAAGCAACCTGTTAAATGCAGCC
TTCCAATCAGTTCCCACAGTACTCGTGTCCAACAGAAAGCGTTTAATAAA
ACCTACAGATCAATTTTTAGtactttttcataaaaacacATCAATGAATT
CAATAGGGAGACAAAGAATAACCCATTTGAATAATCTCACCAAAATTGCT
TCCGATGAATTTACAGTGCTGGATGATGAGAAAAAGGcatttcataaatt
tgaaaGTATATCTGAAATTGATACTGACTTACCTTCAACTGCGACTGAAA
GGGATAAAAGTATCGctgatttgaatattttgactGGAGTAAAAAAGTCT
GCAGGTACTGACAAAATAACTCAATATCCAAACGCTGAAAAGAAGTTTGC
TTTACGCAATTCAAAGGAGCAGAGCTTCCAATCAGAACAAAGAGAACAGA
GACCACGTGACATGATAAAGAATCAAGCGCCAAACACTAACATTTCAACT
AAGGCAAACTCTTCCAATTTTGATAACAGGGCTAATAAATTTACGGAGAG
CGAAGGGAAAGAAATTATAAACTCCATCGAAGATATCGGTAAATCTTTAA
GCTCAGTCAAATCGAACGTGACCGATGAGAACGAACCTATACGTAATGAA
ACGAACGTTAAAATGCTTTCCGATTTCTCCAAAACACCATCAAATATTAA
TGACACGAGGAAAGAGTTTGGAACGGGGAATCTTACAACGCCTTTGACAG
TGAAAGATGATGGAAAATTGACCAATGAGAGTATTTTGAGGACTATGATT
AATAATGCAACAAATTCTATCCCACCTGAAAAAGTAACTCAACTCAATTC
AAAGAATGGTTCGACTTCTGGAATTGATGTCAGTCTGAACAATAAATCAA
CAGTATATACAGATAGAAATAGAGAAGCAAACACTTCAAGTGGTGTCAAC
CCGGCTTCTACACTATCCGGGAATTCAACGAAACCACTTGCCATAGACAA
TTCAACAATGTCAACAGAATACCATTACAACGTTAAATCTGACAATGATA
ATCTATTACTAGTAAATTCTACCAAATATCAAAAGAATGAAAATGAGAAG
TTCCCACAATCCGTAGATCTTTTAAAGCCACAAAACCAAACAACAGAAGG
TATTTCGATTAACAATTCAAGTATCAATCAACCATTCAGCAACTACCAAG
CGAATCCAACTCCATATGTCGTTTCAACTGGTGGATCGTTCCTGGAAAAT
CAATCTTCAGAAAACATATACACCAATACAAGCAGCGACCCCAATACAAG
AAACTCAACCTCAGAAAATTTAACGATAAACAATGCTCTAGAACCACAAG
CGAATTCATCAATTTCAAACCAAACAACGTCAAATCTTCAACAGCCCCCT
GATGAAGTAGGAGCTGAGGATCATTCAGCTGCACAATATTTTGACAAACC
GACCAATGAAGATATGATGGCAATACAGAATCTACCTCAAGAAAATCTAA
ACGTTCCATTGATACCACCAGCTTTGGAAAACGCAAATACCAAAACCAAC
AATGCACAAATATCAGATCCATATTCAATGGATAATCAAGGAGGCCAAAT
CACAGAACCAAAACTAATAAACAATTCAGATGAAACGTTGAAGTCTCCAA
CACAGGAACAAATGACATTTTCAACATCAAACACCACAACAGTAGGTGCA
AACATTGATATTCCAGAACATAAGGCAAATAATACATCGTCACTCAAAAA
CAGTGAATATCCAATGAATCCAACTGCAGTTTTATCCCCAGAAAAGAAAA
CCAACGATTCGTTCACCAATGTAGAGGATATTATGGAACTANGGAAAACG
ACAATACCAAAACCAACAATGCACAAATATCAGATCCATATTCAACGGAT
AATCAAGGAGGCCATATCACAGAACCAAAACGAATAAACAATTCAGATGA
AACGTTGAAGTCTCCAACGCAGGAACAAATGACATTTTCAACATCAAACA
CCACAACAGTAGGTGAAAACATTGATATTCCAGAGCATAAGGCAAATAAT
ACATCGTCACTCAAAAACAGTGAATACCCAATGAATCCAACTGCAATTTT
ATCCCCAGAAAAGAAAACCAATGACTTGTTCACCAATGTAGAGGATATAA
TGGAATTGCCAGCATCATTTAACACCACGAAAACAAACAATTCTTCTATA
CAGCTCCAACGCAAGAATATAATCCCAACGCCCAGCCCACGTGACCGTCT
AGCCCGTGAATATATTCCAATGTATGCGCCCACAGTCTATAGTGAAGATG
TTAACGACTTTCTGGATGGGTCTGTAGTCCCAAGACAGCTAAAACCAGAT
TCCAGAGTAAGCGAGACGACTGGGCTAGGGCAAAGTGACGTAGCCTCGCT
GACTAGCTTCTTAGCTAACGAACGAATGGAGGAACAAACGATAGCGAATG
AGGCGCAGAGCGTAACAAGAATTCATCCGCATCGTGTTACGGCGGAGAAA
AAGGAGCAGGAGACGCCAGTACGACGGGATAAACAAGGTAACTTAGGTTA
TTTGATCCTAgtataaagaaaaatctttatttttcgaatATGTCATTTTA
GTTCGAACGAATACAATGCCTTCAGTTGGTTAGGTCTCTGAATTAAGGGA
AAATTACTGGTCCCTTGGAAATCATATTGCAGCAAGTCAAAGTGTtcctt
taaccctttaagtgccacggtcattttttctaagttttttaaagaaaatc
gctagttcaaactttaaaggcttatatctcgagatctagaaggagttaga
agctcgttcataactcgttggatagcttagagtctcctctttctgcTGCG
CGGACCTACCTGAATGATATAAAGATGcccaaaacttcaaattaacTCGC
TGGATGACAGTATCAAGTAAAACAGGgcaaaatttggaggttcttggatc
actcgttggacaaaaatggtcaaaaaacgatcaaaatctttaaaaaatgg
atttttgtcaaattttagcatttttggcttaaaatgttGCTGATAAGACT
GActtatgattttttattttgcttgaccatgaagcccaatccaattctta
cgagttagaccaaaaatgacgattctCAAACTGaacattacaggagggct
tcgccatCCTTCATAGCctatgtctgatatatacgacattggcacttaaa
gggttaatattttatattttcgttTAAATGTAGAACACCACGATAGCATG
CAGACTGATGACATCAAACTGCTGAAAGACGCGATCAATGTTGGCGAAAA
ATCACTtctcaatttcataaaaaatcatttgaaCCAGAAAGACAAAACTC
TGATGAAACTGAAGGCTGTTGAAGATTCTCTTGAAAGTAAATTAGTTGgt
aagatgaaacataaaagaaaTATAACACAGTCTTTAGATGAGGCTACCGC
GACACTGGAACAAGACTCGAAATCTGATTCCGAGTCAAACGAGTCAGATG
AAAGGAAAAATCTCCAAGAAGAAGCGAATCAAGAATCATCAAAGACAGAT
ATAGAAGAATCACCGAACAAGGATACTAAAGTTTATTCTGAGCCTCAAGA
AAACTCAGATAATGgtgaaacaaaaaatcaaattaaaatggCTGATATCA
AAGCAGAGATTCAGGCCGATAAGTCTGAATTAGGCGTTCCATCAAGTCAT
CTGGAAACTGaaagaaaggaggaaatttctGCTCAGAATTCAACAGTACC
TTCTTCTCTAGACAGTAACGATAATTCAACTTTACTGTCAGAAACATCTA
AGGTTGAAGAAGGTAAAGAGTTTTCAAACGAATCGGAGGAACAGAAAAGT
CAAAGTGAAAATGTAAAGCCAGCCCATGATGAATCTGATGGAAGTTCCCA
GAGCCCTGGGCCTGGAGAATCTACACCAATGGTGAAGATGGACAGACAGA
ATGCTGGAAATATCACTTCGTTGAACGAAGTTGTGGCTAGGGCAAATAAG
GTAAACAAATCGGTAAGGAAAAAAAGGTTATTTTTCAATCGCAAACGAAt
gtatgttttcttttcttcgtATTTATTACTTTGAAATGTTTGAAAGATGT
TGACTTTTGTAGTCGATTATAACAGCACCAGGTACAGTTTATCCATCACG
AGATACGAGGTCTTCGAATGTGTTCTTCCTTTTTCTAGTTCCTCACTTTT
AATCGTCGTCTGTGGACTGACAGAGTGTTTTGTCAGTGATATCCCATTAA
TCTGTAATGAATTTGCGTTTAGAATTCATCCATCCAATCAAAGCCCCATA
CATCCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00008559TCONS_00008559Clytia hemisphaericatranscript
TCONS_00008560TCONS_00008560Clytia hemisphaericatranscript
TCONS_00008561TCONS_00008561Clytia hemisphaericatranscript
TCONS_00008562TCONS_00008562Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00008560-proteinTCONS_00008560-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:587035..592490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0.08	0.11	0.05	0.27	0.35	6.17	7.64	0.93	0.89	4.46	2.04	2.95	2.32	1.95	8.02	4.45	3.45	0	0	1.83	1.76	1.38	1.9	2.79	3.12	0.17	0.13	0	0.03