TCONS_00008556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008556
Unique NameTCONS_00008556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008556 ID=TCONS_00008556|Name=TCONS_00008556|organism=Clytia hemisphaerica|type=transcript|length=2339bp
CTTTGATAAGGCATTAATACATGCttacaaaattgtcaaaaaagtaaaat
gtcCGCATAATTTTGACACAGACTTAGATATGAAATTTCGCACACTTTTT
CCAATACAACAATTACCACTTATAATACTATATCTAATTTCTTACATGTT
GAcagcaattttttatttcagatatTAAAACACAATGAAAACACCATATG
AAAAGTATGGAGTTAAATGCTTCAGAAATATTGGAATACCTTTTAAAGGA
ATGATCAAAAGTCAGCCAACAGATTTTATCGTCAAAGAGATTGGTCTTAA
TGGTCAGATAGCTGGCACTGACAGATATGTTGATAGTTTGGCGAATCTGA
ATTCATCGAATCTAGCTCCATGCAAGAAACATCGATCCAGTACTGGTGAA
TCTTCAAGTAATAATCACCATCAACCCATACCAGCAATCACAAAACAGAC
TGATGCTGGTGCTGCTGTAGATTGGAATCTAATTCGAATAGGTCCTAAAA
AGCATTTAGGGAAATTAATTGGTGATGCTCATTTGAATCAGATAGAGGAA
TTATCATTGAATCAATTCTCTTTGGATGTTATTGAGCTAGGTTCGTTTGA
AGACAAAAATGACCGTACCATTCTCCACCAATGTATACGTCAATGTTTCC
CAAACATCAAATCAGTTCCTGTCCGACGAGAATCTCAAACCGTCATCACG
TGTTGTGTCGATCCTGCCTTCAAAAGTCTGGTAGATATTGGTCTGACACC
AGAATGCATTAAAGAACTATTGGTTTTTATTAACTGTCGGTTGTTAAGAG
GTACACAAACGAGCGAAGAAAGACCATTATTGATTGGTGTTGCAGAAATG
GATCGAACGACTAGGGGTCAAGTACATCATTTTTTACAAAGAGAATATGG
CAaatttttggaatctaaaactGTTGGAGATAAATCAGATTCGATTTCAG
TTCGGTTCAAAGAACGCAAGGAGAATCGACAGAATAAACGAAAGCGAGAA
GAGAAAAATGTATTCAGTTTTGTTTTTCGTAAAGAGAATATTGAACTGCT
CCATGCTCTGAATTCTCTGGCCAAAGTTCTGAAAGTGGATGCTGGTCAAA
TTAAATATGCTGGAATAAAAGACAAGAAAGCTGTAACATATCAATTCTTG
TCTGTCTCCGGTGCCAAAGTTTCAGATTTGAAATCAGTTTCCACATTTGG
TAGTTTGCAATGGAAGGTTGTTGGAGAACCTACTCTTGTGGATGATGAAT
TAAGATTGGGAGATTTATCAGGGAACCATTTCGAAATCGTTGTCAAGGAT
GTACAACCTGTAGAAGGATCAGAAAATGACGTTAAGAATGGTATCTCATC
AGCAATAGAAGCTATTAAAACAAATGGATTTCTCAATTATTTCGGCGAGC
AACGCTTCGGAATTGATCTTTCCACTGCTCTCATTGGTAAACATTTGTTC
ACTGGTGAATTCATTAAAGCTCTCAATTTTGTATTCGCTCCACTTATGCC
AGAGGAAAGCAAATCAGAAACATTGGATGTCGTTGAAAAAGCAAAGCAAA
TGTTTCACGTGGACAAAAACATCGATGGAGCGTTAAAAATGATGCCTAAT
TTCAAAGTTCGAGAATGCCAAATGCTGAAAGCTTTGAAACGTTATTCATA
TTGTGAGAACGGCTGTGTGAAAGCCTTTATGAATATTCCGTTCGCCGCAC
GGCTGTTTTATCTGCATAGTTATTGTAGCTATGTGTGGAATAGAACACTT
TCCATAAGAGTGGAGCGCTTCGGGTTCGATGTTCTGGAAGGGGACTTGGT
CCAAGATGGTGAATCAGTTCGACCAATCATGGCAGAAGAAgttaaaaagt
ttcattttcgaGATGTTCTTTTACCTTTTCCCGGTAGTAACATAATGTAC
CCTGAAAATGAAACTAGAGTGATAATGGACAACCTCCTTAGAGAAGATGG
TCTACAGGCTAAACAGCTGAATGTCAGGAGGCTAGGTATTGCACACATCC
CTGGCTCTTATCGGCGAGTTTTGTCTTTCTCAAACGAACTTGAGTATAAA
TTTATGGAAGTTTGTGAAGCAAGTGAAGATGGGAAGACCTCTGAAAGTAA
TCTTGATCTTTGTTTGGAATTCATTTTGCCACCATCCACATACGCCACTA
TTTTACTACGTGAAATATTAAACTCTTCACATGTTTTGTGAACCTATATT
TTGTTATATGATTTTCTCGTATAAATCCCCACTGTCTACTTTATCTGTTT
CGACCAGTTTAAAACACGAATGAGGTTATAAAAATCCTTTTTGATCATAA
TATATTCATAAAACGTATTTTCGTACAATTTTACTgcca
Run BLAST on NCBI

protein sequence of TCONS_00008556-protein

>TCONS_00008556-protein ID=TCONS_00008556-protein|Name=TCONS_00008556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=668bp
MKTPYEKYGVKCFRNIGIPFKGMIKSQPTDFIVKEIGLNGQIAGTDRYVD
SLANLNSSNLAPCKKHRSSTGESSSNNHHQPIPAITKQTDAGAAVDWNLI
RIGPKKHLGKLIGDAHLNQIEELSLNQFSLDVIELGSFEDKNDRTILHQC
IRQCFPNIKSVPVRRESQTVITCCVDPAFKSLVDIGLTPECIKELLVFIN
CRLLRGTQTSEERPLLIGVAEMDRTTRGQVHHFLQREYGKFLESKTVGDK
SDSISVRFKERKENRQNKRKREEKNVFSFVFRKENIELLHALNSLAKVLK
VDAGQIKYAGIKDKKAVTYQFLSVSGAKVSDLKSVSTFGSLQWKVVGEPT
LVDDELRLGDLSGNHFEIVVKDVQPVEGSENDVKNGISSAIEAIKTNGFL
NYFGEQRFGIDLSTALIGKHLFTGEFIKALNFVFAPLMPEESKSETLDVV
EKAKQMFHVDKNIDGALKMMPNFKVRECQMLKALKRYSYCENGCVKAFMN
IPFAARLFYLHSYCSYVWNRTLSIRVERFGFDVLEGDLVQDGESVRPIMA
EEVKKFHFRDVLLPFPGSNIMYPENETRVIMDNLLREDGLQAKQLNVRRL
GIAHIPGSYRRVLSFSNELEYKFMEVCEASEDGKTSESNLDLCLEFILPP
STYATILLREILNSSHVL
Run BLAST on NCBI

transcript from alignment at sc0000086:556498..559428+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008556 ID=TCONS_00008556|Name=TCONS_00008556|organism=Clytia hemisphaerica|type=transcript|length=2931bp|location=Sequence derived from alignment at sc0000086:556498..559428+ (Clytia hemisphaerica)
CTTTGATAAGGCATTAATACATGCttacaaaattgtcaaaaaagtaaaat
gtcCGCATAATTTTGACACAGACTTAGATATGAAATTTCGCACACTTTTT
CCAATACAACAATTACCACTTATAATACTATATCTAATTTCTTACATGTT
GAcagcaattttttatttcagatatTAAAACACAATGAAAACACCATATG
AAAAGTATGGAGTTAAATGCTTCAGAAATATTGGAATACCTTTTAAAGGA
ATGATCAAAAGTCAGCCAACAGATTTTATCGTCAAAGAGATTGGTCTTAA
TGGTCAGATAGCTGGCACTGACAGATATGTTGATAGTTTGGCGAATCTGA
ATTCATCGAATCTAGCTCCATGCAAGAAACATCGATCCAGTACTGGTGAA
TCTTCAAGTAATAATCACCATCAACCCATACCAGCAATCACAAAACAGAC
TGATGCTGGTGCTGCTGTAGATTGGAATCTAATTCGAATAGGTCCTAAAA
AGCATTTAGGGAAATTAATTGGTGATGCTCATTTGAATCAGATAGAGGAA
TTATCATTGAATCAATTCTCTTTGGATGTTATTGAGCTAGGTAAACCATT
TTTAATAAGTTCTTTGATATTTTGAGAGCCtttcaaaagtttgaaacaac
TTGACTTACCTTTAAACTGTAAtataaaagattttgaaacattaatgata
aaatgtttaaaataaatCTATAATTAGACTTGagtgtttataattttttg
cttTACCAGGTTCGTTTGAAGACAAAAATGACCGTACCATTCTCCACCAA
TGTATACGTCAATGTTTCCCAAACATCAAATCAGTTCCTGTCCGACGAGA
ATCTCAAACCGTCATCACGTGTTGTGTCGATCCTGCCTTCAAAAGTCTGG
TAGATATTGGTCTGACACCAGAATGCATTAAAGAACTATTGGTTTTTATT
AACTGTCGGTTGTTAAGAGGTACACAAACGAGCGAAGAAAGACCATTATT
GATTGGTGTTGCAGAAATGGATCGAACGACTAGGGGTCAAGTACATCATT
TTTTACAAAGAGAATATGGCAaatttttggaatctaaaactGTTGGAGAT
AAATCAGATTCGATTTCAGTTCGGTTCAAAGAACGCAAGGAGAATCGACA
GAATAAACGAAAGCGAGAAGAGAAAAATGTATTCAGTTTTGTTTTTCGTA
AAGAGAATATTGAACTGCTCCATGCTCTGAATTCTCTGGCCAAAGTTCTG
AAAGTGGATGCTGGTCAAATTAAATATGCTGGAATAAAAGACAAGAAAGC
TGTAACATATCAATTCTTGTCTGTCTCCGGTGCCAAAGTTTCAGATTTGA
AATCAGTTTCCACATTTGGTAGTTTGCAATGGAAGGTTGTTGGAGAACCT
ACTCTTGTGGATGATGAATTAAGATTGGGAGATTTATCAGGGAACCATTT
CGAAATCGTTGTCAAGGATGTACAACCTGTAGAAGGTAAAGTGGACGGAT
TTTCGTTTCAGTGAAGTATTATAAAGAGACTTCatcgtctcaaaattctg
catcgTTCGCCGAAATCTTAAGATTAATGTGTTAATTTGCcatgtaaaat
ccattttctgtCTCTGATGAAAATCCTTGCTTTGATCACTGCAAAGAGAA
GGCAATTTAAGTTTTTCAAAGTAAACTTGAAAAGTAATTTATGCACAGAG
ATTCCAATATTTCACCCAAATCGTTGACTTTTACTCCCCTTTTACACCAC
GACTTTTTTAACGGATATTTCAGaattattttagaaatatttataATTGT
GGTTGGGTTGCTATTTACAGAAAGCATTTATTTTTCAGCTATTGTTTCAA
TGTAGTTTTATTTAAGCTGTTCTATCACTGTCAGTAAACTTTTTCTATTC
TGTTCTAGGATCAGAAAATGACGTTAAGAATGGTATCTCATCAGCAATAG
AAGCTATTAAAACAAATGGATTTCTCAATTATTTCGGCGAGCAACGCTTC
GGAATTGATCTTTCCACTGCTCTCATTGGTAAACATTTGTTCACTGGTGA
ATTCATTAAAGCTCTCAATTTTGTATTCGCTCCACTTATGCCAGAGGAAA
GCAAATCAGAAACATTGGATGTCGTTGAAAAAGCAAAGCAAATGTTTCAC
GTGGACAAAAACATCGATGGAGCGTTAAAAATGATGCCTAATTTCAAAGT
TCGAGAATGCCAAATGCTGAAAGCTTTGAAACGTTATTCATATTGTGAGA
ACGGCTGTGTGAAAGCCTTTATGAATATTCCGTTCGCCGCACGGCTGTTT
TATCTGCATAGTTATTGTAGCTATGTGTGGAATAGAACACTTTCCATAAG
AGTGGAGCGCTTCGGGTTCGATGTTCTGGAAGGGGACTTGGTCCAAGATG
GTGAATCAGTTCGACCAATCATGGCAGAAGAAgttaaaaagtttcatttt
cgaGATGTTCTTTTACCTTTTCCCGGTAGTAACATAATGTACCCTGAAAA
TGAAACTAGAGTGATAATGGACAACCTCCTTAGAGAAGATGGTCTACAGG
CTAAACAGCTGAATGTCAGGAGGCTAGGTATTGCACACATCCCTGGCTCT
TATCGGCGAGTTTTGTCTTTCTCAAACGAACTTGAGTATAAATTTATGGA
AGTTTGTGAAGCAAGTGAAGATGGGAAGACCTCTGAAAGTAATCTTGATC
TTTGTTTGGAATTCATTTTGCCACCATCCACATACGCCACTATTTTACTA
CGTGAAATATTAAACTCTTCACATGTTTTGTGAACCTATATTTTGTTATA
TGATTTTCTCGTATAAATCCCCACTGTCTACTTTATCTGTTTCGACCAGT
TTAAAACACGAATGAGGTTATAAAAATCCTTTTTGATCATAATATATTCA
TAAAACGTATTTTCGTACAATTTTACTgcca

Coding sequence (CDS) from alignment at sc0000086:556498..559428+

>TCONS_00008556 ID=TCONS_00008556|Name=TCONS_00008556|organism=Clytia hemisphaerica|type=CDS|length=6021bp|location=Sequence derived from alignment at sc0000086:556498..559428+ (Clytia hemisphaerica)
ATGAAAACACCATATGAAAAGTATGGAGTTAAATGCTTCAGAAATATTGG
AATACCTTTTAAAGGAATGATCAAAAGTCAGCCAACAGATTTTATCGTCA
AAGAGATTGGTCTTAATGGTCAGATAGCTGGCACTGACAGATATGTTGAT
AGTTTGGCGAATCTGAATTCATCGAATCTAGCTCCATGCAAGAAACATCG
ATCCAGTACTGGTGAATCTTCAAGTAATAATCACCATCAACCCATACCAG
CAATCACAAAACAGACTGATGCTGGTGCTGCTGTAGATTGGAATCTAATT
CGAATAGGTCCTAAAAAGCATTTAGGGAAATTAATTGGTGATGCTCATTT
GAATCAGATAGAGGAATTATCATTGAATCAATTCTCTTTGGATGTTATTG
AGCTAGGTTCGTTTGAAGACAAAAATGACCGTACCATTCTCCACCAATGT
ATACGTCAATGTTTCCCAAACATCAAATCAGTTCCTGTCCGACGAGAATC
TCAAACCGTCATCACGTGTTGTGTCGATCCTGCCTTCAAAAGTCTGGTAG
ATATTGGTCTGACACCAGAATGCATTAAAGAACTATTGGTTTTTATTAAC
TGTCGGTTGTTAAGAGGTACACAAACGAGCGAAGAAAGACCATTATTGAT
TGGTGTTGCAGAAATGGATCGAACGACTAGGGGTCAAGTACATCATTTTT
TACAAAGAGAATATGGCAaatttttggaatctaaaactGTTGGAGATAAA
TCAGATTCGATTTCAGTTCGGTTCAAAGAACGCAAGGAGAATCGACAGAA
TAAACGAAAGCGAGAAGAGAAAAATGTATTCAGTTTTGTTTTTCGTAAAG
AGAATATTGAACTGCTCCATGCTCTGAATTCTCTGGCCAAAGTTCTGAAA
GTGGATGCTGGTCAAATTAAATATGCTGGAATAAAAGACAAGAAAGCTGT
AACATATCAATTCTTGTCTGTCTCCGGTGCCAAAGTTTCAGATTTGAAAT
CAGTTTCCACATTTGGTAGTTTGCAATGGAAGGTTGTTGGAGAACCTACT
CTTGTGGATGATGAATTAAGATTGGGAGATTTATCAGGGAACCATTTCGA
AATCGTTGTCAAGGATGTACAACCTGTAGAAGGATCAGAAAATGACGTTA
AGAATGGTATCTCATCAGCAATAGAAGCTATTAAAACAAATGGATTTCTC
AATTATTTCGGCGAGCAACGCTTCGGAATTGATCTTTCCACTGCTCTCAT
TGGTAAACATTTGTTCACTGGTGAATTCATTAAAGCTCTCAATTTTGTAT
TCGCTCCACTTATGCCAGAGGAAAGCAAATCAGAAACATTGGATGTCGTT
GAAAAAGCAAAGCAAATGTTTCACGTGGACAAAAACATCGATGGAGCGTT
AAAAATGATGCCTAATTTCAAAGTTCGAGAATGCCAAATGCTGAAAGCTT
TGAAACGTTATTCATATTGTGAGAACGGCTGTGTGAAAGCCTTTATGAAT
ATTCCGTTCGCCGCACGGCTGTTTTATCTGCATAGTTATTGTAGCTATGT
GTGGAATAGAACACTTTCCATAAGAGTGGAGCGCTTCGGGTTCGATGTTC
TGGAAGGGGACTTGGTCCAAGATGGTGAATCAGTTCGACCAATCATGGCA
GAAGAAgttaaaaagtttcattttcgaGATGTTCTTTTACCTTTTCCCGG
TAGTAACATAATGTACCCTGAAAATGAAACTAGAGTGATAATGGACAACC
TCCTTAGAGAAGATGGTCTACAGGCTAAACAGCTGAATGTCAGGAGGCTA
GGTATTGCACACATCCCTGGCTCTTATCGGCGAGTTTTGTCTTTCTCAAA
CGAACTTGAGTATAAATTTATGGAAGTTTGTGAAGCAAGTGAAGATGGGA
AGACCTCTGAAAGTAATCTTGATCTTTGTTTGGAATTCATTTTGCCACCA
TCCACATACGCCACTATTTTACTACGTGAAATATTAAACTCTTCACATGT
TTTGTGAATGAAAACACCATATGAAAAGTATGGAGTTAAATGCTTCAGAA
ATATTGGAATACCTTTTAAAGGAATGATCAAAAGTCAGCCAACAGATTTT
ATCGTCAAAGAGATTGGTCTTAATGGTCAGATAGCTGGCACTGACAGATA
TGTTGATAGTTTGGCGAATCTGAATTCATCGAATCTAGCTCCATGCAAGA
AACATCGATCCAGTACTGGTGAATCTTCAAGTAATAATCACCATCAACCC
ATACCAGCAATCACAAAACAGACTGATGCTGGTGCTGCTGTAGATTGGAA
TCTAATTCGAATAGGTCCTAAAAAGCATTTAGGGAAATTAATTGGTGATG
CTCATTTGAATCAGATAGAGGAATTATCATTGAATCAATTCTCTTTGGAT
GTTATTGAGCTAGGTTCGTTTGAAGACAAAAATGACCGTACCATTCTCCA
CCAATGTATACGTCAATGTTTCCCAAACATCAAATCAGTTCCTGTCCGAC
GAGAATCTCAAACCGTCATCACGTGTTGTGTCGATCCTGCCTTCAAAAGT
CTGGTAGATATTGGTCTGACACCAGAATGCATTAAAGAACTATTGGTTTT
TATTAACTGTCGGTTGTTAAGAGGTACACAAACGAGCGAAGAAAGACCAT
TATTGATTGGTGTTGCAGAAATGGATCGAACGACTAGGGGTCAAGTACAT
CATTTTTTACAAAGAGAATATGGCAaatttttggaatctaaaactGTTGG
AGATAAATCAGATTCGATTTCAGTTCGGTTCAAAGAACGCAAGGAGAATC
GACAGAATAAACGAAAGCGAGAAGAGAAAAATGTATTCAGTTTTGTTTTT
CGTAAAGAGAATATTGAACTGCTCCATGCTCTGAATTCTCTGGCCAAAGT
TCTGAAAGTGGATGCTGGTCAAATTAAATATGCTGGAATAAAAGACAAGA
AAGCTGTAACATATCAATTCTTGTCTGTCTCCGGTGCCAAAGTTTCAGAT
TTGAAATCAGTTTCCACATTTGGTAGTTTGCAATGGAAGGTTGTTGGAGA
ACCTACTCTTGTGGATGATGAATTAAGATTGGGAGATTTATCAGGGAACC
ATTTCGAAATCGTTGTCAAGGATGTACAACCTGTAGAAGGATCAGAAAAT
GACGTTAAGAATGGTATCTCATCAGCAATAGAAGCTATTAAAACAAATGG
ATTTCTCAATTATTTCGGCGAGCAACGCTTCGGAATTGATCTTTCCACTG
CTCTCATTGGTAAACATTTGTTCACTGGTGAATTCATTAAAGCTCTCAAT
TTTGTATTCGCTCCACTTATGCCAGAGGAAAGCAAATCAGAAACATTGGA
TGTCGTTGAAAAAGCAAAGCAAATGTTTCACGTGGACAAAAACATCGATG
GAGCGTTAAAAATGATGCCTAATTTCAAAGTTCGAGAATGCCAAATGCTG
AAAGCTTTGAAACGTTATTCATATTGTGAGAACGGCTGTGTGAAAGCCTT
TATGAATATTCCGTTCGCCGCACGGCTGTTTTATCTGCATAGTTATTGTA
GCTATGTGTGGAATAGAACACTTTCCATAAGAGTGGAGCGCTTCGGGTTC
GATGTTCTGGAAGGGGACTTGGTCCAAGATGGTGAATCAGTTCGACCAAT
CATGGCAGAAGAAgttaaaaagtttcattttcgaGATGTTCTTTTACCTT
TTCCCGGTAGTAACATAATGTACCCTGAAAATGAAACTAGAGTGATAATG
GACAACCTCCTTAGAGAAGATGGTCTACAGGCTAAACAGCTGAATGTCAG
GAGGCTAGGTATTGCACACATCCCTGGCTCTTATCGGCGAGTTTTGTCTT
TCTCAAACGAACTTGAGTATAAATTTATGGAAGTTTGTGAAGCAAGTGAA
GATGGGAAGACCTCTGAAAGTAATCTTGATCTTTGTTTGGAATTCATTTT
GCCACCATCCACATACGCCACTATTTTACTACGTGAAATATTAAACTCTT
CACATGTTTTGTGAATGAAAACACCATATGAAAAGTATGGAGTTAAATGC
TTCAGAAATATTGGAATACCTTTTAAAGGAATGATCAAAAGTCAGCCAAC
AGATTTTATCGTCAAAGAGATTGGTCTTAATGGTCAGATAGCTGGCACTG
ACAGATATGTTGATAGTTTGGCGAATCTGAATTCATCGAATCTAGCTCCA
TGCAAGAAACATCGATCCAGTACTGGTGAATCTTCAAGTAATAATCACCA
TCAACCCATACCAGCAATCACAAAACAGACTGATGCTGGTGCTGCTGTAG
ATTGGAATCTAATTCGAATAGGTCCTAAAAAGCATTTAGGGAAATTAATT
GGTGATGCTCATTTGAATCAGATAGAGGAATTATCATTGAATCAATTCTC
TTTGGATGTTATTGAGCTAGGTTCGTTTGAAGACAAAAATGACCGTACCA
TTCTCCACCAATGTATACGTCAATGTTTCCCAAACATCAAATCAGTTCCT
GTCCGACGAGAATCTCAAACCGTCATCACGTGTTGTGTCGATCCTGCCTT
CAAAAGTCTGGTAGATATTGGTCTGACACCAGAATGCATTAAAGAACTAT
TGGTTTTTATTAACTGTCGGTTGTTAAGAGGTACACAAACGAGCGAAGAA
AGACCATTATTGATTGGTGTTGCAGAAATGGATCGAACGACTAGGGGTCA
AGTACATCATTTTTTACAAAGAGAATATGGCAaatttttggaatctaaaa
ctGTTGGAGATAAATCAGATTCGATTTCAGTTCGGTTCAAAGAACGCAAG
GAGAATCGACAGAATAAACGAAAGCGAGAAGAGAAAAATGTATTCAGTTT
TGTTTTTCGTAAAGAGAATATTGAACTGCTCCATGCTCTGAATTCTCTGG
CCAAAGTTCTGAAAGTGGATGCTGGTCAAATTAAATATGCTGGAATAAAA
GACAAGAAAGCTGTAACATATCAATTCTTGTCTGTCTCCGGTGCCAAAGT
TTCAGATTTGAAATCAGTTTCCACATTTGGTAGTTTGCAATGGAAGGTTG
TTGGAGAACCTACTCTTGTGGATGATGAATTAAGATTGGGAGATTTATCA
GGGAACCATTTCGAAATCGTTGTCAAGGATGTACAACCTGTAGAAGGATC
AGAAAATGACGTTAAGAATGGTATCTCATCAGCAATAGAAGCTATTAAAA
CAAATGGATTTCTCAATTATTTCGGCGAGCAACGCTTCGGAATTGATCTT
TCCACTGCTCTCATTGGTAAACATTTGTTCACTGGTGAATTCATTAAAGC
TCTCAATTTTGTATTCGCTCCACTTATGCCAGAGGAAAGCAAATCAGAAA
CATTGGATGTCGTTGAAAAAGCAAAGCAAATGTTTCACGTGGACAAAAAC
ATCGATGGAGCGTTAAAAATGATGCCTAATTTCAAAGTTCGAGAATGCCA
AATGCTGAAAGCTTTGAAACGTTATTCATATTGTGAGAACGGCTGTGTGA
AAGCCTTTATGAATATTCCGTTCGCCGCACGGCTGTTTTATCTGCATAGT
TATTGTAGCTATGTGTGGAATAGAACACTTTCCATAAGAGTGGAGCGCTT
CGGGTTCGATGTTCTGGAAGGGGACTTGGTCCAAGATGGTGAATCAGTTC
GACCAATCATGGCAGAAGAAgttaaaaagtttcattttcgaGATGTTCTT
TTACCTTTTCCCGGTAGTAACATAATGTACCCTGAAAATGAAACTAGAGT
GATAATGGACAACCTCCTTAGAGAAGATGGTCTACAGGCTAAACAGCTGA
ATGTCAGGAGGCTAGGTATTGCACACATCCCTGGCTCTTATCGGCGAGTT
TTGTCTTTCTCAAACGAACTTGAGTATAAATTTATGGAAGTTTGTGAAGC
AAGTGAAGATGGGAAGACCTCTGAAAGTAATCTTGATCTTTGTTTGGAAT
TCATTTTGCCACCATCCACATACGCCACTATTTTACTACGTGAAATATTA
AACTCTTCACATGTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004789XLOC_004789Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008556-proteinTCONS_00008556-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008556-exon-sc0000086-1491911889:556498..557087TCONS_00008556-exon-sc0000086-1491911889:556498..557087Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1510915933:556498..557087TCONS_00008556-exon-sc0000086-1510915933:556498..557087Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1575043694:556498..557087TCONS_00008556-exon-sc0000086-1575043694:556498..557087Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1491911889:557257..557982TCONS_00008556-exon-sc0000086-1491911889:557257..557982Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1510915933:557257..557982TCONS_00008556-exon-sc0000086-1510915933:557257..557982Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1575043694:557257..557982TCONS_00008556-exon-sc0000086-1575043694:557257..557982Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1491911889:558406..559428TCONS_00008556-exon-sc0000086-1491911889:558406..559428Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1510915933:558406..559428TCONS_00008556-exon-sc0000086-1510915933:558406..559428Clytia hemisphaericaexon
TCONS_00008556-exon-sc0000086-1575043694:558406..559428TCONS_00008556-exon-sc0000086-1575043694:558406..559428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:556498..559428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.27814	7.09794	3.75295	3.22886	4.33514	3.05294	3.87597	3.60859	2.32996	2.97295	2.565	2.07438	2.58106	2.784	3.42378	4.55727	4.57638	5.72873	2.24865	2.03808	3.52681	3.22843	16.0803	12.7615	4.50653	5.42646	1.46169	2.02307	8.43012	9.86977
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR020119PsdUridine_synth_TruD_CS
IPR011760PsdUridine_synth_TruD_insert
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00008556 vs. Swiss-Prot (Human)
Match: PUS7L (Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 9.051e-83
Identity = 215/709 (30.32%), Postives = 343/709 (48.38%), Query Frame = 2 
Query:  203 KYGVKCFRNIGIPFKGMIKSQPTDFIVKEIGLNGQIAGT--DRYVDSLANLN-SSNLAPCKKHRSSTGESSSNNHHQPIPAITKQTD------AGAAVDWNLIRIGPKKHLGKLIGDAHLNQIEELSLNQFSLDVIE----------------LGSFEDKNDRTILHQCIRQCFPNIKSVPVRRESQTVITCCVDPAFKSLVDIGLTPECIKELLVFINCRLLRGTQTSEERPLLIGVAEMDRTTRGQVHHFLQREYGKFLESKT-------VGDKSDSISVRFXXXXXXXXXXXXXX----XXXVFSFVFRKENIELLHALNSLAKVLKVDAGQIKYAGIKDKKAVTYQFLSVSGAKVSDLKSVSTFGSLQWKVVGEPTLVDDELRLGDLSGNHFEIVVKDVQPVEGSENDVKNGISSAIEAIKTNGFLNYFGEQRFGI--DLSTALIGKHLFTGEFIKALNFVFAPLMPEESKSETLDVVEKAKQMFHVDKNIDGALKMMPNFKVRECQMLKALKRYSYCENGCVKAFMNIPFAARLFYLHSYCSYVWNRTLSIRVERFGFDVLEGDLVQDGESVRP---------IMAEE---VKKFHFRDVLLPFPGSNIMYPENETRVIMDNLLREDGLQAKQLNVRRLGIAHIPGSYRRVLSFSNELEYKFMEVCEASEDGKTS---ESNLDLCLEFILPPSTYATILLREIL 2170
            ++   CF N  + F G IKS P+DFIV EI   GQ+     D  +  ++ +    N  P K        S  +  +Q +  + K TD      +G+  +  ++    K      +  + L++     LN F+ DV E                +G   DKN R  LH  IRQ FP +  V V + S+ V+   ++  +K L  + ++ E   +   +++ +        +E        + ++  R  VHHF+ +++G  +E+K+        G+ +  ++VRF+E+   R  +   E    +    +F  RKEN+E+  A+  LA  L V      YAG+KDKKA+TYQ + V       LK++      +   V     VDD LRLG L GNHF+IV+++++       +++  I  AIE +K  GF+NY+G QRFG    + T  IG  L   E +KA+     P        +  D V +AK+ F   ++  G L +MP FKVRE  +L+AL R+   E GC++A+ ++P + R+FY+H+Y S +WN  +S R+E +G  V++GDLV   E +           ++ EE      +    V+LP  G NI YP+N+      ++L  DGLQ  +  V  L + +IPG YR++L     L Y+ ME  +     K S   E+ L L + F L  S YAT+ L+EI+
Sbjct:   10 RFSSLCFFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEIQLEPNNFPKKPKLDLQNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIRQKFPFL--VTVGKNSEIVVKPNLE--YKELCHL-VSEEEAFDFFKYLDAK--------KENSKFTFKPDTNKDHRKAVHHFVNKKFGNLVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTP-------EDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKL-NIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIM 697
The following BLAST results are available for this feature:
BLAST of TCONS_00008556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS7L9.051e-8330.32Pseudouridylate synthase 7 homolog-like protein OS... [more]
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