TCONS_00008556-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008556-protein
Unique NameTCONS_00008556-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008556-protein ID=TCONS_00008556-protein|Name=TCONS_00008556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=668bp
MKTPYEKYGVKCFRNIGIPFKGMIKSQPTDFIVKEIGLNGQIAGTDRYVD
SLANLNSSNLAPCKKHRSSTGESSSNNHHQPIPAITKQTDAGAAVDWNLI
RIGPKKHLGKLIGDAHLNQIEELSLNQFSLDVIELGSFEDKNDRTILHQC
IRQCFPNIKSVPVRRESQTVITCCVDPAFKSLVDIGLTPECIKELLVFIN
CRLLRGTQTSEERPLLIGVAEMDRTTRGQVHHFLQREYGKFLESKTVGDK
SDSISVRFKERKENRQNKRKREEKNVFSFVFRKENIELLHALNSLAKVLK
VDAGQIKYAGIKDKKAVTYQFLSVSGAKVSDLKSVSTFGSLQWKVVGEPT
LVDDELRLGDLSGNHFEIVVKDVQPVEGSENDVKNGISSAIEAIKTNGFL
NYFGEQRFGIDLSTALIGKHLFTGEFIKALNFVFAPLMPEESKSETLDVV
EKAKQMFHVDKNIDGALKMMPNFKVRECQMLKALKRYSYCENGCVKAFMN
IPFAARLFYLHSYCSYVWNRTLSIRVERFGFDVLEGDLVQDGESVRPIMA
EEVKKFHFRDVLLPFPGSNIMYPENETRVIMDNLLREDGLQAKQLNVRRL
GIAHIPGSYRRVLSFSNELEYKFMEVCEASEDGKTSESNLDLCLEFILPP
STYATILLREILNSSHVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004789XLOC_004789Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008556TCONS_00008556Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001656PsdUridine_synth_TruD
IPR020119PsdUridine_synth_TruD_CS
IPR011760PsdUridine_synth_TruD_insert
IPR020103PsdUridine_synth_cat_dom
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001656Pseudouridine synthase, TruDTIGRFAMTIGR00094TIGR00094coord: 271..664
e-value: 2.5E-58
score: 196.3
IPR001656Pseudouridine synthase, TruDPFAMPF01142TruDcoord: 260..661
e-value: 3.1E-63
score: 214.0
NoneNo IPR availableGENE3D3.30.2340.10coord: 460..613
e-value: 4.6E-24
score: 84.8
NoneNo IPR availablePIRSFPIRSF037016Pseudouridin_synth_eukcoord: 4..173
e-value: 1.1E-8
score: 31.1
coord: 202..666
e-value: 1.0E-99
score: 332.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..85
NoneNo IPR availableCDDcd02576PseudoU_synth_ScPUS7coord: 279..662
e-value: 2.41861E-87
score: 279.112
IPR020119Pseudouridine synthase TruD, conserved sitePROSITEPS01268UPF0024coord: 310..323
IPR011760Pseudouridine synthase, TruD, insertion domainPROSITEPS50984TRUDcoord: 398..615
score: 27.959
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 266..427
coord: 18..36
coord: 500..663

Blast
[Close]
BLAST of TCONS_00008556-protein vs. Swiss-Prot (Human)
Match: PUS7L (Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 4.041e-89
Identity = 218/710 (30.70%), Postives = 349/710 (49.15%), Query Frame = 0 
Query:    7 KYGVKCFRNIGIPFKGMIKSQPTDFIVKEIGLNGQIAG--TDRYVDSLANLN-SSNLAPCKKHRSSTGESSSNNHHQPIPAITKQTD------AGAAVDWNLIRIGPKKHLGKLIGDAHLNQIEELSLNQFSLDVIE----------------LGSFEDKNDRTILHQCIRQCFPNIKSVPVRRESQTVITCCVDPAFKSLVDIGLTPECIKELLVFINCRLLRGTQTSEERPLLIGVAEMDRTTRGQVHHFLQREYGKFLESKT-------VGDKSDSISVRFKERKENRQNKRK----REEKNVFS-FVFRKENIELLHALNSLAKVLKVDAGQIKYAGIKDKKAVTYQFLSVSGAKVSDLKSVSTFGSLQWKVVGEPTLVDDELRLGDLSGNHFEIVVKDVQPVEGSENDVKNGISSAIEAIKTNGFLNYFGEQRFGI--DLSTALIGKHLFTGEFIKALNFVFAPLMPEESKSETLDVVEKAKQMFHVDKNIDGALKMMPNFKVRECQMLKALKRYSYCENGCVKAFMNIPFAARLFYLHSYCSYVWNRTLSIRVERFGFDVLEGDLVQDGESVRP---------IMAEE---VKKFHFRDVLLPFPGSNIMYPENETRVIMDNLLREDGLQAKQLNVRRLGIAHIPGSYRRVLSFSNELEYKFMEVCEASEDGKTS---ESNLDLCLEFILPPSTYATILLREIL 662
            ++   CF N  + F G IKS P+DFIV EI   GQ+     D  +  ++ +    N  P K        S  +  +Q +  + K TD      +G+  +  ++    K      +  + L++     LN F+ DV E                +G   DKN R  LH  IRQ FP +  V V + S+ V+   ++  +K L  + ++ E   +   +++ +        +E        + ++  R  VHHF+ +++G  +E+K+        G+ +  ++VRF+E K +++ KR     +E K +++ F  RKEN+E+  A+  LA  L V      YAG+KDKKA+TYQ + V       LK++      +   V     VDD LRLG L GNHF+IV+++++       +++  I  AIE +K  GF+NY+G QRFG    + T  IG  L   E +KA+     P        +  D V +AK+ F   ++  G L +MP FKVRE  +L+AL R+   E GC++A+ ++P + R+FY+H+Y S +WN  +S R+E +G  V++GDLV   E +           ++ EE      +    V+LP  G NI YP+N+      ++L  DGLQ  +  V  L + +IPG YR++L     L Y+ ME  +     K S   E+ L L + F L  S YAT+ L+EI+
Sbjct:   10 RFSSLCFFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEIQLEPNNFPKKPKLDLQNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIRQKFPFL--VTVGKNSEIVVKPNLE--YKELCHL-VSEEEAFDFFKYLDAK--------KENSKFTFKPDTNKDHRKAVHHFVNKKFGNLVETKSFSKMNCSAGNPNVVVTVRFRE-KAHKRGKRPLSECQEGKVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTP-------EDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKL-NIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIM 697
The following BLAST results are available for this feature:
BLAST of TCONS_00008556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUS7L4.041e-8930.70Pseudouridylate synthase 7 homolog-like protein OS... [more]
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