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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008542 ID=TCONS_00008542|Name=TCONS_00008542|organism=Clytia hemisphaerica|type=transcript|length=1534bp
TTTAAAGCCGGGCGactcttgttttctattcaatttcctttgttttgcaa
caaagaaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAA
GGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttg
ttatgtCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACA
TTGTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatca
aatgatTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAG
AAAGATAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTC
ACTCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTC
CTTGGTAGAGAATGCCTTGAGCTGGACAAACACTCAATCAGTTGGAACCA
TGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTAATA
CATGATCAAATTAACAAGAGAACACATCGACTAACTTCTTACATTTCATG
GATTGGAAATTGGAACCAGCTTATATCATTTGTACCAATCGAAGAATGAA
ATATCAAtgcttttattttttcttgtttaTTGTTAACAATCACGAGGCAC
ATTTCGATTtatgtaattcttataaaaaaactgtgtACCCAGGATAGAAT
TTTACAAATACCATCTCTCAATTGCacttagaaaatttcaaaaatttttc
tttgcacTCTTagagaaacaaaacaaatttttactgCATTTTGAGTGCCA
GATACTGTATATAGCAGATCAAATTTTGTGAAATAATGGTCTTTTTTGCT
TGATGCTTctaatttaaatcaaaattattcTTTGTTCGTAATTATAGAAT
CGTAACAATTTATGACCTTGAATTTGATTTCGAAACTTTTTGCACCAAAC
AAAAGATAGATTTTTGAATTCTCTTTGCaaataaattttgttaaatataa
ttatatttttttttcatttttatataaaCATTTTGCTTTTATCACCAATT
AAGTATTTTACAATGAAAAGCGTGCCAATTTTAtgataacttttgaagaa
attaatgacaatgttttttaaataagtttATAGACTTTagtttttaaaac
tgttttactACCGCAaattacttttttatgatggaTAGTTGAAAATATCA
AGTTGAGGAAAGATGTTTCTCTACTCTTTTTGACTAATTGTTAGGGGGTC
ACTTTGCTACTTTTCCGATTCTTCAACACCACCGCCCCGCCCCCAATTTC
ACTTTATTAGGACCCCTcccccattttatgactttttgcctcgaaattgc
ctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAATTCAC
TCCAATATCACTTTAATGTGacctccccccccccattttatgactttttg
cctcgaaattgcctaaaagtgccaaaaaccttcattttcctggGGAAAAT
CACTAAATTCACTCCAATATCACTTTAATGtgac Run BLAST on NCBI transcript from alignment at sc0000086:338138..343110+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008542 ID=TCONS_00008542|Name=TCONS_00008542|organism=Clytia hemisphaerica|type=transcript|length=4973bp|location=Sequence derived from alignment at sc0000086:338138..343110+ (Clytia hemisphaerica)
TTTAAAGCCGGGCGactcttgttttctattcaatttcctttgttttgcaa
caaagaaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAA
GGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttg
ttatgtCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACA
TTGTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatca
aatgatTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAG
AAAGATAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTC
ACTCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTC
CTTGGTAGAGAATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGT
CTGGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGCCCATTTTTAAA
CTTCATGTACTCAACCGTCGACTAGGTAGTTCTTCCAGTTCTTGTTGTCT
TTCACTTTGTTTACGTGATCAGCTAAAAGTTGGCAGTTAATTTCGAAAAG
TTTGCTTCTTGGTAATACTGAAGGAAGATATGGAAGAAGAATTTGAATTT
CGTCGCAAACAAACAGCTGCCTTAGTAAAGTAGTGTAGATTATTATGCAA
CCGGTGCGTGATATGATAAGCCGattcatcataaaaagtaagacTGTAGA
AAACTTAAAGAGTTTGTGAGTGCTTTGTGAGTTGATATTACTAATGATGC
TGTTGATGTTCATCCTGAGAAAATCTGTGAAAAGTGTAGAGTTGTTTGTA
CGAGTTTGAATCAGTATTGAAAGGCACCCAGAGGCACCCAAGCTGAAAGT
AGGAAAAAAGAGAAAGCTAGGCATAAATCAACACAGTGTGTATAAGACAA
CAACAGCATCAGATATTGATACCAGTGGTTTCGCAGATTGTGTTGATGGa
gagaaaatttcagaaattaaagAGACCGTGGCTTTGTCTGTTATCTGATG
GAGCTTCTACAAACCGTTCATTTTATAAACTCAAAGAATAAGGAAGATAC
TGTAATTTCTTCAGCATTAATCTATGTGCTTTGGATAGAAATAAGCTCTA
CATATTTCATTTGTGAGgacaaaacaattttgaaaactctCATGGAAATA
GAAGCACCAAAAATTTTGTAAGCCAATGGTTTGTCTATTATTTCCAGAGG
AAATACCTTGAATGATATCAATGATgatttgtttgaaatatttatcaCTA
CCAGgtgttgaaattcaaaaaaaattattgaaattatatGGTCTAATTCC
TTTCCTTTTAGCTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAA
CTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTAATACATGATCAAA
TTAACAAGAGAACACATCGACTAAGTATGATGAACGTTTAAACTTGCAGC
TCAGGTAACTTAGATGATTACCATATTAACTCAAAAAAAGTGCCTAAATG
TTATCTAATCAGGCTAGGTAAAGTCTGAGAATTAGGTTTGTCTGAAATAA
AATGGCCTTTTTATATGACAATAAAAATCCCATGAtagtaggggccacta
tgtcgcgaaaaagcttcccgtgtgcagcagcttgtgcaaagggattttat
gattgaatattgttccttgaatgtagaagatcaaaatttgagaggtgggg
ctgggtgtgaccacccgttgccatggaaactgacgtcattggttactata
gCAACCAAtaaaaaagtcgtcaaaatagaagaaaaaaaaatccattcgaa
agagcatgaaaaactgttaaagaaaaaggtcacaacctatatctgaaaat
gaatatatcaggagatattaaggaaataagccaaaatgacgtcatgaaac
aatgacgtcatcgaaaaataaaaatttgccaaatttaaaaaatttttggt
tttttgaaaatcattgtttcatgacgtcattttgccttatttcctcaata
tctcctgatatattcattttcagatatagcttgtgacctttttctttatc
agtttttcatgctctttcgaatggaacaaaaaattttcaattttgacgac
tttttattttggttgccatagtaaccaatgacgtcaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGTCAGTCtccatg
gcaacgggtggtcacacccggctccacctctcaaattttgatcttctaca
ttcaaggaacaatattcaatcataaaaaccctttgcacaagcttctgcac
acgggaagacatagtggcccctactaTGATATGTTATTCATGTATTCAGT
TGTTGTCAATGACATTGAAATGACTATAGCTACAAGTCTGGTCTCgataa
ttttagtttgatgactAGCTTGATATAAacagaaattttgaataattttt
ctggGCTCAACATCAAAACTTCCTGAGTGGCTTTTTCAACTGTGAAACAC
AAATATTGAATGTTTGGATGGTGACAAAGACTCTagcttattttcattat
ttgtcctggattccttttgaaaattacttcatttttattttagtgtCTCA
GTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAACTAGAGGT
ACACAAAAGTTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGG
GCAGTATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTC
TCAGACAGTTTATATGCACTGTTTGATGAAATACGAAGCATTTATTAAGT
GGCAAGCAATAGAAATTGCAATTGGTAATTTGAAATGCTTTCAGTGGGTT
CGTTTAGACATCCTGGCATATGTAATTGCtttcgattttcttttgtttca
attgTTATACACTATTGTTCAGTTTaccaaatgcctaatgatgccagcga
gCGGTAATTTGAAATGCCATTCTGAGCTAAGGAATCGCCATTTCTGGCAT
TTCAAGCTAAACAAAGAAACTAAAACAAAGAACAAAATTGACATTTGTGA
CTTGTTGAAGTGTCTGCACGCTTTCTATTCAGGTTTTTCTATAAACTATA
AAATTTGCATCTTTTGCTGTATCTCAAGGCTACGGCAAGCAGTGGGATaa
acaatcaaaataaattctATTTGGAGTAATTGGCAATATGCCAGGATATG
TAAACGCAACCAGTTTCAGTTTTAGAATAAAAGAATTGATAGTTAGATAC
TTTAAatattaaaactaaaatttgtaAAACGTAAACATTGACAAAATTGG
AGAAAAGAGGGAGCGTCACTTAACATGTCCAATAAAATTTCCATCACGGA
TTACActctttatttttataagaaccatgaaATTTGAGCTAAGGTCGTTG
AGGCTCAAAccgtttttaaatttttacactttcagcctcaaattgttctt
aatttgttcttattttttgagtttttttagcgggcattttttgttttgtt
tctattATTGCCCTATTTTTACCTTTGTTTGACGAAAAATAGACATTCCA
GCCTTGgacttaaattgttcttaattttttaccattttgaacctcattgt
tcttatataaaaagtgtAGTCCGTGAACGGGCTGTCAAGATGTAAAAACT
TttgattgacttgaaattaatCTTTGAAATATAACATTGATAACTAACCA
CACATAAAAATTATACGGTACTTTTCCGTGGCTTTCTTGCCACCGTaatt
ttactttcgatttcgaccATCTGTAACACGTAAACTTGCGCGGGTAAACG
CGTTTTGAAATGTCGATTTAGACATTGTATCATATGAGCTTTTGAGGTTC
CCACAACTACTCAATATCGTCTGTATAATAATGCATTgaaccaaaattaa
atttaattttgtttCTCGTTTAGCTTCTTACATTTCATGGATTGGAAATT
GGAACCAGCTTATATCATTTGTACCAATCGAAGAATGAAATATCAAtgct
tttattttttcttgtttaTTGTTAACAATCACGAGGCACATTTCGATTta
tgtaattcttataaaaaaactgtgtACCCAGGATAGAATTTTACAAATAC
CATCTCTCAATTGCacttagaaaatttcaaaaatttttctttgcacTCTT
agagaaacaaaacaaatttttactgCATTTTGAGTGCCAGATACTGTATA
TAGCAGATCAAATTTTGTGAAATAATGGTCTTTTTTGCTTGATGCTTcta
atttaaatcaaaattattcTTTGTTCGTAATTATAGAATCGTAACAATTT
ATGACCTTGAATTTGATTTCGAAACTTTTTGCACCAAACAAAAGATAGAT
TTTTGAATTCTCTTTGCaaataaattttgttaaatataattatatttttt
tttcatttttatataaaCATTTTGCTTTTATCACCAATTAAGTATTTTAC
AATGAAAAGCGTGCCAATTTTAtgataacttttgaagaaattaatgacaa
tgttttttaaataagtttATAGACTTTagtttttaaaactgttttactAC
CGCAaattacttttttatgatggaTAGTTGAAAATATCAAGTTGAGGAAA
GATGTTTCTCTACTCTTTTTGACTAATTGTTAGGGGGTCACTTTGCTACT
TTTCCGATTCTTCAACACCACCGCCCCGCCCCCAATTTCACTTTATTAGG
ACCCCTcccccattttatgactttttgcctcgaaattgcctaaaagtgcc
aaaaaccttcattttcctggGGAAAATCACTAAATTCACTCCAATATCAC
TTTAATGTGacctccccccccccattttatgactttttgcctcgaaattg
cctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAATTCA
CTCCAATATCACTTTAATGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008542-exon-sc0000086-1491911889:338138..338558 | TCONS_00008542-exon-sc0000086-1491911889:338138..338558 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1510915933:338138..338558 | TCONS_00008542-exon-sc0000086-1510915933:338138..338558 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1575043694:338138..338558 | TCONS_00008542-exon-sc0000086-1575043694:338138..338558 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1491911889:339499..339611 | TCONS_00008542-exon-sc0000086-1491911889:339499..339611 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1510915933:339499..339611 | TCONS_00008542-exon-sc0000086-1510915933:339499..339611 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1575043694:339499..339611 | TCONS_00008542-exon-sc0000086-1575043694:339499..339611 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1491911889:342111..343110 | TCONS_00008542-exon-sc0000086-1491911889:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1510915933:342111..343110 | TCONS_00008542-exon-sc0000086-1510915933:342111..343110 | Clytia hemisphaerica | exon |
| TCONS_00008542-exon-sc0000086-1575043694:342111..343110 | TCONS_00008542-exon-sc0000086-1575043694:342111..343110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:338138..343110 + |
Blast
The following BLAST results are available for this feature:
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