TCONS_00008542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008542
Unique NameTCONS_00008542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008542 ID=TCONS_00008542|Name=TCONS_00008542|organism=Clytia hemisphaerica|type=transcript|length=1534bp
TTTAAAGCCGGGCGactcttgttttctattcaatttcctttgttttgcaa
caaagaaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAA
GGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttg
ttatgtCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACA
TTGTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatca
aatgatTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAG
AAAGATAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTC
ACTCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTC
CTTGGTAGAGAATGCCTTGAGCTGGACAAACACTCAATCAGTTGGAACCA
TGTGGTACAACTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTAATA
CATGATCAAATTAACAAGAGAACACATCGACTAACTTCTTACATTTCATG
GATTGGAAATTGGAACCAGCTTATATCATTTGTACCAATCGAAGAATGAA
ATATCAAtgcttttattttttcttgtttaTTGTTAACAATCACGAGGCAC
ATTTCGATTtatgtaattcttataaaaaaactgtgtACCCAGGATAGAAT
TTTACAAATACCATCTCTCAATTGCacttagaaaatttcaaaaatttttc
tttgcacTCTTagagaaacaaaacaaatttttactgCATTTTGAGTGCCA
GATACTGTATATAGCAGATCAAATTTTGTGAAATAATGGTCTTTTTTGCT
TGATGCTTctaatttaaatcaaaattattcTTTGTTCGTAATTATAGAAT
CGTAACAATTTATGACCTTGAATTTGATTTCGAAACTTTTTGCACCAAAC
AAAAGATAGATTTTTGAATTCTCTTTGCaaataaattttgttaaatataa
ttatatttttttttcatttttatataaaCATTTTGCTTTTATCACCAATT
AAGTATTTTACAATGAAAAGCGTGCCAATTTTAtgataacttttgaagaa
attaatgacaatgttttttaaataagtttATAGACTTTagtttttaaaac
tgttttactACCGCAaattacttttttatgatggaTAGTTGAAAATATCA
AGTTGAGGAAAGATGTTTCTCTACTCTTTTTGACTAATTGTTAGGGGGTC
ACTTTGCTACTTTTCCGATTCTTCAACACCACCGCCCCGCCCCCAATTTC
ACTTTATTAGGACCCCTcccccattttatgactttttgcctcgaaattgc
ctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAATTCAC
TCCAATATCACTTTAATGTGacctccccccccccattttatgactttttg
cctcgaaattgcctaaaagtgccaaaaaccttcattttcctggGGAAAAT
CACTAAATTCACTCCAATATCACTTTAATGtgac
Run BLAST on NCBI

transcript from alignment at sc0000086:338138..343110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008542 ID=TCONS_00008542|Name=TCONS_00008542|organism=Clytia hemisphaerica|type=transcript|length=4973bp|location=Sequence derived from alignment at sc0000086:338138..343110+ (Clytia hemisphaerica)
TTTAAAGCCGGGCGactcttgttttctattcaatttcctttgttttgcaa caaagaaaaatcgcCTTTGACGCGAGCTAAGTTATGCCACCAATTGAGAA GGAAGCAAACATGGCGGGTCGAAGCGGTGATTTTGCTGctgttatttttg ttatgtCTATTCGAGTTATGACTAAAACAACGTCTACAGCAAGTACTACA TTGTTTAAAACATCTCAAATGCTTTTggatatatttatttcaaccaatca aatgatTTGTTTACGTTTTGACTAAGGATACAGTGAAATTATCATCGAAG AAAGATAACCTGTCTTGTTGAGTAGCTAACAGCACCTACTCATGGAATTC ACTCGAAATCGAAAAGatggacaatttttttcaaatagggAACAATTTTC CTTGGTAGAGAATGCCTTGAGGTATGTATATCTGAAGTTTCTAGTGTGGT CTGGCTCTTTTCACTGTGGTCTGGCTCTTTGAGTTCAGCCCATTTTTAAA CTTCATGTACTCAACCGTCGACTAGGTAGTTCTTCCAGTTCTTGTTGTCT TTCACTTTGTTTACGTGATCAGCTAAAAGTTGGCAGTTAATTTCGAAAAG TTTGCTTCTTGGTAATACTGAAGGAAGATATGGAAGAAGAATTTGAATTT CGTCGCAAACAAACAGCTGCCTTAGTAAAGTAGTGTAGATTATTATGCAA CCGGTGCGTGATATGATAAGCCGattcatcataaaaagtaagacTGTAGA AAACTTAAAGAGTTTGTGAGTGCTTTGTGAGTTGATATTACTAATGATGC TGTTGATGTTCATCCTGAGAAAATCTGTGAAAAGTGTAGAGTTGTTTGTA CGAGTTTGAATCAGTATTGAAAGGCACCCAGAGGCACCCAAGCTGAAAGT AGGAAAAAAGAGAAAGCTAGGCATAAATCAACACAGTGTGTATAAGACAA CAACAGCATCAGATATTGATACCAGTGGTTTCGCAGATTGTGTTGATGGa gagaaaatttcagaaattaaagAGACCGTGGCTTTGTCTGTTATCTGATG GAGCTTCTACAAACCGTTCATTTTATAAACTCAAAGAATAAGGAAGATAC TGTAATTTCTTCAGCATTAATCTATGTGCTTTGGATAGAAATAAGCTCTA CATATTTCATTTGTGAGgacaaaacaattttgaaaactctCATGGAAATA GAAGCACCAAAAATTTTGTAAGCCAATGGTTTGTCTATTATTTCCAGAGG AAATACCTTGAATGATATCAATGATgatttgtttgaaatatttatcaCTA CCAGgtgttgaaattcaaaaaaaattattgaaattatatGGTCTAATTCC TTTCCTTTTAGCTGGACAAACACTCAATCAGTTGGAACCATGTGGTACAA CTCTGGGAGTTCAAGAATACTAAAATCCCAGGGCTTAATACATGATCAAA TTAACAAGAGAACACATCGACTAAGTATGATGAACGTTTAAACTTGCAGC TCAGGTAACTTAGATGATTACCATATTAACTCAAAAAAAGTGCCTAAATG TTATCTAATCAGGCTAGGTAAAGTCTGAGAATTAGGTTTGTCTGAAATAA AATGGCCTTTTTATATGACAATAAAAATCCCATGAtagtaggggccacta tgtcgcgaaaaagcttcccgtgtgcagcagcttgtgcaaagggattttat gattgaatattgttccttgaatgtagaagatcaaaatttgagaggtgggg ctgggtgtgaccacccgttgccatggaaactgacgtcattggttactata gCAACCAAtaaaaaagtcgtcaaaatagaagaaaaaaaaatccattcgaa agagcatgaaaaactgttaaagaaaaaggtcacaacctatatctgaaaat gaatatatcaggagatattaaggaaataagccaaaatgacgtcatgaaac aatgacgtcatcgaaaaataaaaatttgccaaatttaaaaaatttttggt tttttgaaaatcattgtttcatgacgtcattttgccttatttcctcaata tctcctgatatattcattttcagatatagcttgtgacctttttctttatc agtttttcatgctctttcgaatggaacaaaaaattttcaattttgacgac tttttattttggttgccatagtaaccaatgacgtcaNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGACGTCAGTCtccatg gcaacgggtggtcacacccggctccacctctcaaattttgatcttctaca ttcaaggaacaatattcaatcataaaaaccctttgcacaagcttctgcac acgggaagacatagtggcccctactaTGATATGTTATTCATGTATTCAGT TGTTGTCAATGACATTGAAATGACTATAGCTACAAGTCTGGTCTCgataa ttttagtttgatgactAGCTTGATATAAacagaaattttgaataattttt ctggGCTCAACATCAAAACTTCCTGAGTGGCTTTTTCAACTGTGAAACAC AAATATTGAATGTTTGGATGGTGACAAAGACTCTagcttattttcattat ttgtcctggattccttttgaaaattacttcatttttattttagtgtCTCA GTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAACTAGAGGT ACACAAAAGTTTGTCAGGATCTGcgacaaaatttttgattgcCTAAATGG GCAGTATCCTAACCAAGATATGGCAACAAGAAAACCGGCAAAACCTGCTC TCAGACAGTTTATATGCACTGTTTGATGAAATACGAAGCATTTATTAAGT GGCAAGCAATAGAAATTGCAATTGGTAATTTGAAATGCTTTCAGTGGGTT CGTTTAGACATCCTGGCATATGTAATTGCtttcgattttcttttgtttca attgTTATACACTATTGTTCAGTTTaccaaatgcctaatgatgccagcga gCGGTAATTTGAAATGCCATTCTGAGCTAAGGAATCGCCATTTCTGGCAT TTCAAGCTAAACAAAGAAACTAAAACAAAGAACAAAATTGACATTTGTGA CTTGTTGAAGTGTCTGCACGCTTTCTATTCAGGTTTTTCTATAAACTATA AAATTTGCATCTTTTGCTGTATCTCAAGGCTACGGCAAGCAGTGGGATaa acaatcaaaataaattctATTTGGAGTAATTGGCAATATGCCAGGATATG TAAACGCAACCAGTTTCAGTTTTAGAATAAAAGAATTGATAGTTAGATAC TTTAAatattaaaactaaaatttgtaAAACGTAAACATTGACAAAATTGG AGAAAAGAGGGAGCGTCACTTAACATGTCCAATAAAATTTCCATCACGGA TTACActctttatttttataagaaccatgaaATTTGAGCTAAGGTCGTTG AGGCTCAAAccgtttttaaatttttacactttcagcctcaaattgttctt aatttgttcttattttttgagtttttttagcgggcattttttgttttgtt tctattATTGCCCTATTTTTACCTTTGTTTGACGAAAAATAGACATTCCA GCCTTGgacttaaattgttcttaattttttaccattttgaacctcattgt tcttatataaaaagtgtAGTCCGTGAACGGGCTGTCAAGATGTAAAAACT TttgattgacttgaaattaatCTTTGAAATATAACATTGATAACTAACCA CACATAAAAATTATACGGTACTTTTCCGTGGCTTTCTTGCCACCGTaatt ttactttcgatttcgaccATCTGTAACACGTAAACTTGCGCGGGTAAACG CGTTTTGAAATGTCGATTTAGACATTGTATCATATGAGCTTTTGAGGTTC CCACAACTACTCAATATCGTCTGTATAATAATGCATTgaaccaaaattaa atttaattttgtttCTCGTTTAGCTTCTTACATTTCATGGATTGGAAATT GGAACCAGCTTATATCATTTGTACCAATCGAAGAATGAAATATCAAtgct tttattttttcttgtttaTTGTTAACAATCACGAGGCACATTTCGATTta tgtaattcttataaaaaaactgtgtACCCAGGATAGAATTTTACAAATAC CATCTCTCAATTGCacttagaaaatttcaaaaatttttctttgcacTCTT agagaaacaaaacaaatttttactgCATTTTGAGTGCCAGATACTGTATA TAGCAGATCAAATTTTGTGAAATAATGGTCTTTTTTGCTTGATGCTTcta atttaaatcaaaattattcTTTGTTCGTAATTATAGAATCGTAACAATTT ATGACCTTGAATTTGATTTCGAAACTTTTTGCACCAAACAAAAGATAGAT TTTTGAATTCTCTTTGCaaataaattttgttaaatataattatatttttt tttcatttttatataaaCATTTTGCTTTTATCACCAATTAAGTATTTTAC AATGAAAAGCGTGCCAATTTTAtgataacttttgaagaaattaatgacaa tgttttttaaataagtttATAGACTTTagtttttaaaactgttttactAC CGCAaattacttttttatgatggaTAGTTGAAAATATCAAGTTGAGGAAA GATGTTTCTCTACTCTTTTTGACTAATTGTTAGGGGGTCACTTTGCTACT TTTCCGATTCTTCAACACCACCGCCCCGCCCCCAATTTCACTTTATTAGG ACCCCTcccccattttatgactttttgcctcgaaattgcctaaaagtgcc aaaaaccttcattttcctggGGAAAATCACTAAATTCACTCCAATATCAC TTTAATGTGacctccccccccccattttatgactttttgcctcgaaattg cctaaaagtgccaaaaaccttcattttcctggGGAAAATCACTAAATTCA CTCCAATATCACTTTAATGtgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004781XLOC_004781Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008542-exon-sc0000086-1491911889:338138..338558TCONS_00008542-exon-sc0000086-1491911889:338138..338558Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1510915933:338138..338558TCONS_00008542-exon-sc0000086-1510915933:338138..338558Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1575043694:338138..338558TCONS_00008542-exon-sc0000086-1575043694:338138..338558Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1491911889:339499..339611TCONS_00008542-exon-sc0000086-1491911889:339499..339611Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1510915933:339499..339611TCONS_00008542-exon-sc0000086-1510915933:339499..339611Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1575043694:339499..339611TCONS_00008542-exon-sc0000086-1575043694:339499..339611Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1491911889:342111..343110TCONS_00008542-exon-sc0000086-1491911889:342111..343110Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1510915933:342111..343110TCONS_00008542-exon-sc0000086-1510915933:342111..343110Clytia hemisphaericaexon
TCONS_00008542-exon-sc0000086-1575043694:342111..343110TCONS_00008542-exon-sc0000086-1575043694:342111..343110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:338138..343110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0378856 0 0.115845 0.0966248 0 0.0926672 0.266853 0 0.270884 0.0709411 0.0859766 0 0.501549 1.30273 0.178564 0 0.272724 0.206927 0 0 0 0 0 0 0 0 0.234686 0.266623
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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