TCONS_00008332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008332
Unique NameTCONS_00008332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008332 ID=TCONS_00008332|Name=TCONS_00008332|organism=Clytia hemisphaerica|type=transcript|length=901bp
TGTTGATTGCGCTTTTCTGTTGTTAGGGGTAATACAAACGTCGCCATAGT
AATTATCACGTGACAATAATAAAGATTCTGTCAAAAACCGCCCGACAATC
CATTTTAGGATAAGAGTTCATCAACAGGTAATGACTCACCCACGAGGGTC
ATTTTCACCCACATCGAGTTTAGTACCACAACATCAAACTGTTTCAGGGT
TCGTTCTTGTGTCTTGTCAAGAGGTTTCTTCTCATTCCATACCAGGAACC
TTGTTTCAAAGGAAATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGG
CCCTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGGG
TTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAGTGTTC
ACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGAGAGAC
ATGCGCAAgTTGTGGATCCAACGTATCAACATTGGAGCAAGAGAACACAA
TACAAATTACACCACCGTCATCAGTCAATTGCACAATAATGATGTGTTGT
TAAATCGCAAAGTGCTTTCTGAGCTTGCAATCCACGAACCTAGGACTTTC
CAGTCTTTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGC
TGTTATTGACTGATTTGAAAATCTTGACTCTCGGTATCTGTATTTCattc
agtgtttttcttttttaaattttatctagatttgttttgtatatattttg
tatttttttttttcgtttgaaaAATGCCAGATTTCTAATTTTCAATCTTC
TGTTTGTCAGTTCTTATACTTTGTCACTTTAAACTCTAAATTTATTATCT
TACAAAGAGAGGTCTCAACTCGATTTTGTCGTTCAGTTATTAGTCCCGGA
T
Run BLAST on NCBI

protein sequence of TCONS_00008332-protein

>TCONS_00008332-protein ID=TCONS_00008332-protein|Name=TCONS_00008332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MFLSFAHMVRAGPFKRIIKKSKVFALAKGFRGRRKNCYSLAVRSVHKSLQ
YQYIGRKLKKRDMRKLWIQRINIGAREHNTNYTTVISQLHNNDVLLNRKV
LSELAIHEPRTFQSLAHLAKKRKEDGLLAVID
Run BLAST on NCBI

transcript from alignment at sc0000084:496168..505119-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008332 ID=TCONS_00008332|Name=TCONS_00008332|organism=Clytia hemisphaerica|type=transcript|length=8952bp|location=Sequence derived from alignment at sc0000084:496168..505119- (Clytia hemisphaerica)
TGTTGATTGCGCTTTTCTGTTGTTAGGGGTAATACAAACGTCGCCATAGT
AATTATCACGTGACAATAATAAAGATTCTGTCAAAAACCGCCCGACAATC
CATTTTAGGATAAGAGTTCATCAACAGGTAATGACTCACCCACGAGGGTC
ATTTTCACCCACATCGAGTTTAGTACCACAACATCAAACTGTTTCAGGGT
TCGTTCTTGTGTCTTGTCAAGAGGTTTCTTCTCATTCCATACCAGGAACC
TTGTTTCAAAGGAAATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGG
CCCTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGGT
ATCATTTTTGTTGACGAAAGTTTTGCCAGGCATTAGTTGATCATTCAAGT
CAGTAAAGAATTAGACGCGAAAGTTTTTTATTTAAAAATTTAGCATAAGC
TTTTCGACATAGTCATCTTCAGTGCAAATGATTTAAATAAAACGTTAAAA
ATGCTGTACAGTTTATACAATATTTATGTTGCTACTTTTCCAGACGGTGT
CAATCGAACAACTTCGAACAAAAATCGCAATCGAACCAATCGAACATAAT
CGAACGCGATCGAATAATTGCGATTCGATTGTCGAACGTAATCAAATCTT
AATCGAACGGCCGATTCCTGGGAAATATTCGATTGTGTTCGATTGCGTTC
GAGTAATGTTCGATTGATAGTTGACTATGTTTGATTGGTTCGATTGATTG
TCAATAACATTGGATTAATGTTCGATCGATTACGATTATGTTCGATGAGT
TTGATTGCGATTAAATCAAATTGGATTACTTTGTTAGAGCTTTTAGCGTG
GGCGGCCGAGTGCTTAAGTAACATACCAAAGCGAATAAAATCTAATACAA
TTGAATCAATCGAACGTAATCGAATACAATGAAACGTAATCGAAGCAATC
GAACAGTAAATCCAGGGTAATATTCGATTGCGATTCGATTGCGTTCGACA
ATCGAATTGCAATTATTCGATTGCGTTCAATTGCGTTCGATTGATTCGGC
GTTCGATTCGTTCAATTGACACCGTCTGGACTTTTTAATCTTTTTTACAA
AAAATATGCTGAAAAATGAAGGCCTCAAAACAGAAATCCACTCAGCACTG
GAAAAGTTATTTCAAGAAATTTCTCTAACTTCATACAATTTAGCAGACTT
GAAAATGCTAAAAGTTTAGCTTCACCTAGCACGGGTTTTTGCAACAAAGT
GGAACAAGCAAAAAATGGAAATAATATAACGGGACTGAATATAACGGGAG
GCGGCACGATACAACCCACGGCATGGCCCGAACGTTCGGGCCTCTTAATT
AATACTTTTTAAAAATGCCACGTGCGGGCCCGCACAGTTACGGACCATGT
TCGGGCCAGATTTTCAAAAACTTGCTACAATCGCGCGTGTAATTTCAGGA
CCCAATATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTATTCAAGTCTAATACAAGCTTCTGATAGAATTTT
ACATTGATCACGAAGAAGCTAAACAAATGTCAATTAATGGTCAGAAGGCC
ATGATTTTTACTTGAAGCATGCTTTCATTTGTTGAGAAAAAGCATCACAC
AAAATGAATATCTAATACTAATGATCGCAACTTTGAGAGTTTTTGTGTGT
AAATAAAGAAGTTACTAATTCTATGTAAATTACAATTTCTTTTGGTACCT
AATGTCATAACGCATCTGAAAATTTTTTCGAAGGCACCGAAAGTAATTGG
GTCGGACATGATGTCCAACTAGAATCGATTTGGGTCGGACATTTCAGCAA
TTGGGTCGGACAATGTCCGATGTCCGACCGTTATTTCGAGCCCTGATATT
TATATTTTAAATTTCTTATTTTAGCAAACAAATTTAAAAATCTTCATCTT
TATTTAAATATATATTGTTCAAATATAAAAGTTAATCATCTATTTTCCAA
TTAAGTTAGGAAAATTATTATAAAAAGAATGATTTGAATCTTACATAATA
TGGTCTTTTTATTCTTTATCCCGTTCCCTTTTCTAGTGGTCTTCTCCTAT
TCGAAGCAGAATTTTTCTGGATCGTCTTTTGTACTGTTATACAACTTTGT
GAATCAAACTGGTATTTGGAACTTTGAATTTGTCTAATATGAAAATATTT
AACAATGGATGATGATAAACCAGGAAAGGTAAGGCAAATCCGTATCAATT
GTAAATACATGGCCCGAACATGGTCCGAACAAAATGTTCGGGCCGATTCA
ATAATTCTTTTTTGTGGCCCGAGCATGGTCCGAACAGGCCCGAACGTGTT
CGGGCCATGCCGTGGCAGGGCTGCAAATAAGCGTCGGTCATCGGTCAATG
TCCGACTGAAAAAGCTATTTGACCAACTGAAAATCTTTTGTGTCGGTCAT
GATGTCCGAATGGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTAGCCTATTCTTTT
AATACTCGCTTCCTTTGTAGCTTTCAGGGTGTTTCTAAGTTAACTTTTAT
CGACTTGCTTTCTTCGTTACTTTCTTTGTTGTTTCTAAGATCACTTTTAT
CAACCCGCTTTCTTATTGTAACGCTTTTAAGGGTGTTTCTAAATTACTTT
TGTCAACTTGCTTTCTTCGTAACCTTCTTTGTTTCTAAGATCACTTTTTT
CCAATTTGCTTTCTTTGTAACTTTCAAGGGTGTTCCAAAGTTAACTTTTA
TCGACTCGCTTTCTTCGTAACTTTCAAGAGTGTTTCTAAGATCAATTCGC
ATTCTTCGTAACTTTCAAGGGTGTTTCAAAGTTTAAATTTTATCGACTCA
CTTTCTTCGTAACTTTCAAGAGTTATTTTAAGACCATTTTCATCAACTTG
CTTACTTCATAACTTTCAAGAGTGTTTCTAAGTTAACTTTTATCAACTTG
CTTTCTTCGTAACTTCCAAGGGTGTTTCTAATATCACTTTTATCGAATCA
ATTTCTCTGTTATATACAGTAACAAACTGTTCAAAGGTAGCTTTTATTTT
TCCTACTCGCTTTCTTCGTAACTTTCAAGAGTGTTTCTAAGTTAACTTTT
ATCGACTCGCTTTCTTCGTAACTTTCAAGAGTGTTTCAAAGTTAACTTTT
ATCGACTTGCTTTCTTCGTAACTTTCAAGAGTGTTTCAAAGTTAACTTTT
ATCAACTGGCTTTCTTTGTAACTTCCAAGGGTGTTTCTAAGATCACTTTT
ATCGAATCAATTTCTCTGTTATATACAGTAACAAACTGTTCAAAGGTAGC
TTTTATTTTTCCTACTCGCTTTCTTCGTAACTTTCAAGAGTGTTTCTAAG
TTAACTTTTATCGACTCGCTTTCTTCATAACTTTCAAGAGTGTTTCAAAG
TTAACTGTTATCGACTCGCTTTCTTCGTAACTTTCAAGAGTGTTTCAAAG
TTAACTTTTATCAACTGGCTTTCTTCGTAACTTCCAAGGGTGTTTCTAAG
ATCACTTTTATCGAATCAATTTTTTTGTTATATCCAGTAACAAACTGTTC
AAAGGTAACTTTTATTTTTCCTACTCGCTTTCTCCGTAACTTAAAAAAAA
TATATACACTGAATGACAGGATTTTGAGTTTGACCGACAGGATTTCATTT
CTGTCGGACATGATGTCCGATTGACTAAAAATATTTATTTGCAGCCCTGC
CGTGGGTCGTGGCACGATTTCTGATCTTTTTCTTGGGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAAAGATCTTC
TATGTGGGGTTTTTTTTGTAAACTTCAAAAAACTGATTTTTGTCCCGCCT
TTGCGAGACTTTGGCTTAAATGCTTGTGTGCACCATAGGGTAAAAAGTCC
AAATATGCGTTTCCAGTAATTTTTGTATGAAGAGTTAGGTCTATACTATT
GGATAGCTTTCCTCTATCAACAGATGATTTTACATGGGATTTTCATGAGA
GTGATCGATCCTAAGGTTAGGCCTGGGTCACCAATAAGTTGTGTTCACGT
CATTTCCAGCCCCGAAATGTGAGTTGGTCGGTTGCCATCTTAAATCATCG
GAAAAATGCGCTCTGGGGATAAGTTTGTTCAGGCAACAAGAATCATAGAG
CACGCAAGCTGCAATGTGATTATTTTGCATATTGCGACCGCACAAAAAGC
AGTTAAAGCGCTTTTTAACCAAAAAACTCTTTGAAAAATTGTAGATAAAA
ATCTTAAAAACACTCGATGATCAAAACTCTGGCTACTACGCTGAATTTAA
AGAATTCTTTGAATAATGTTGCTAAAAAATCCCGACAAATTAATTTTCCA
ACTTTCCAACTAAAAAAGGGTCGGATTTTTAATATAGAAAGTGAGTGGTC
GGAGAATGCAAACACAACTTATTGGTGGCCCAGGCCTTATCATAAAACAC
AGATTAATAAAAATATTATTGTGTTCTTACATTTCAATATGAAAGGTGAT
GCACATTGTAGAGGGTACTTTTCAAGTCATTTCAAGAGATTTTGCTATCA
TCCACAAGGTCTATTTGAAAAACAAAGCCATTCTAAATTACTTATCCCAA
AACCCCTTTCCTTTGTTATGAAAATCCAAGAAAACTAATCTTCGAATGTG
TTTAGGGAGTTCCATTTACAGTGGTTTTGAGAAAAAATATTTCCTTTATC
CTTAAAATTAACAGACTACATATTACAGATCACACAGCTTCTTATAAAGT
GCAACTTTTAAACACCCATGAGATTAAAGAAACCTTAATATTATTGTTTT
CTTAGCAGCGAAACATGATTAAGAAAAGAATAATGAAGAATAATGAACCC
CCGTATATTGAGAAATATGGGCGAGGGTGCTACTTAGTTTCACGGGGCAT
CTACAATGATAAACTATCTCGTTGTTTATTTTCTGAAATATACAAATAGT
ATATTTGATATGATTTACTTATTCATTTCAAGCATGTGATAGCGCAAATT
TAAATATATGGCTAAATAAAAAACAAATGATAGCAGTTTTGTTTTCTCCT
CAAACCCCTGGGAAAAGTTTTTTTGCCAACTTAGCTTTTTTACAAATCTC
GGAAAAGAACTCCCATAGGAATTCCAATACATAATCAGATTGGTTAATTT
TGGAACGGCTTCAAGAAAGTCATAATGGCAGATAATTTTAAAAGTTTTGA
TGAGGAAATGTGTGGGATTTATTGACGTTGATAGCTTCTTGATTCTTTAG
TAAAGAAAAAAGATAACAGGTATAGCATTTTCTAATCCTGGAAATATTGA
AGTTCCAGCTGCACTGAAAATACAATGCTGTTAAGTTGACACAACACATT
GACAGGCGTTAATCCCTGTCAGTGTGGCTGAAATATTCTTGCCAGATCAT
TCTTGCCAGATTATAAGCCATCAACCAACAAAATCAACACTGAAATTTTC
ACACAAACTTTCGGCAGTGAACACTTCTAAATTATCTGCTTTTATGAAGA
TGTTCCAAAACTAATGGCAGGTAAAAATCTCACCCTTCACGTTGCGTTTC
CCATAGAATTTGTATGAAGAGTTAAAACTACTGATGGACGGGATCTCCAC
TGGGCACAGACAGGGTTTAATAGGGCCTTTTGCTAGTCAGAATACCATTT
AACTTAAATTTCTTTTTCACCACTAAAATGGTATCCTGACTAGCAGAAGG
TCTATCTATGAATGTGATTGAAGTTTTCAAACTATTTGAGAATGAATTTA
ATAAGTGAACAAAACAAAAATCCAACTCAGTGTTGTGGAAAAACCGCTGG
ATTCAGCTGGATTTCAAAGATAAATGCAACCTGTATTTACCTGAAACTCG
TTGAATCTGCAGGCAAATTCAATTCAATGAATGTAATGACTTTTTCTTAA
AGGACTCCCTTGTGATTTGATGCGATACATTTTGATATGTTTTTCTTTGT
TAGGGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAG
TGTTCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGA
GAGACATGCGCAAGGTAAACAAAAGCAAAAGCTGCGTCTCATTACAATCT
ACCGAATGGTAATGTGAAGGTTTCGACCACAGAGTTGCGCAGCAATGGAC
TGTGTTCGAAACCCAAACACTTCCAGGCAGCGTGTTATGGTAATATGGTG
ATAGACTCTCTACCTTTGATCATAAAATCAAATGCTGTTATCCATATATT
TTGTTGCAGACTCGAAAACAATAAATTTGTATCAGTTTAAGAAAGCAGTT
GACTTAAACTGACTTGAACCAACCATTCTAGTGATTCTAGAAAGATCATA
AAACTCGCATTGTTCATCTCCCTGTCATATGGTTTCATAAGAGTCTATTC
CATCAAGAAAACAAGTTGATTCTTCTGATACCATATCATAAGGACCCTTA
GTTATGGATTATGATATATTATTCAGACTTGTGCCAGAGATGTCTTAAAT
GTTAAATGTATTCATTAAGTGCCATAACGAAAGTTCTTGTCTTCACCATA
TTTAAAGTCAGGTTGATGATATTTCAATTTGAATAGAGGTCTGGAGCTGG
CAAAAGCATTGTATTTTCAAAACGAATCATGAAAATGAAAGAGCTTTCGA
ACCGTTGCAGTAGTTGGGATCTATTTTTTCCTGAAAATGAATATATAGTA
GTTCCACTACTCTAAATATAATTCTCCATTCTTTCTTGGTTGATTTATAG
TTGTGGATCCAACGTATCAACATTGGAGCAAGAGAACACAATACAAATTA
CACCACCGTCATCAGTCAATTGCACAATGTAAGTCTCAATATTTTGCGTA
CCACAAGTGATATACAGCTGACGCTCTCTTATTCGACGTTTTACTATTCG
ATACGCTCCTCTATTCGATAGTATTAAAAGTCGCCGTCAACAAGAATTTC
TCTTAAACGACATTCTACTATTCGACGAAAATTCTTTTCTCCTTTAAAAT
CGCAGTGGTTAACTTAGATTAGCAGTTTTCTCTCCTACAATTGAAAACTC
CTTCAGCTTGTGATAGCTTCAACCTTAAAAGACTTTAAAAGGCTTGTGAT
GCTTCGATTGCTCCCTTCAGCTTTCCCCATCCTGGCAGTAGCGTAGGTTG
GGGTGAAGGAACATTTGCATAGGAGAGCAGATTGAAACGACACAGTATTT
ATGTTTTATACTACGAATAGGTAAGTGCCTTTGTCGTTAAAATCTACTCT
TCTACGCAGATCGTTTTTCGCCCCTGTCTAAGCTACTGTCTGCCTGGTTC
AAAAAATCCCACCTTAGATTGGCTTCCAAGCAAAAGTCTTGGTGCCAAAC
ATTGTTTACATTTCTCCTGAAGTAACCCACGGCTCCAGAAAAGCTTTATC
CTCCACGACTGAACCTTTGTTCCAAGTCCACCCAGGATGGTTCCATAATG
GTGTATTCTTTGTTTTTTATTCAATACAGAATGATGTGTTGTTAAATCGC
AAAGTGCTTTCTGAGCTTGCAATCCACGAACCTAGGACTTTCCAGGTACG
TTTTTTTCGTTTTGATTATTCAGGAGGTTTTAATTGATTGAATCTATAAT
CACCATTATAATTGCTATATACAAAGTTTACATTGTAGGGTCCTGATCTC
TTTTCGAATCTCTTCCTGCTCCTGGAATTTCCCGTCTGGCTGCTATACTA
GAGGAGGAAATAACGGTTTTCCAGGAAAGTGCTTTCAACTTGCTTTCAAT
TATGAATTTGATTCTAACATATTGACTTGGTGGTGGAAATGACTTGATTA
AAACTCAAATAGTTAAGAACACCCGAAGGCTTCAAACAGACGTTTTTTAT
AAAAAACATGTTCCTATTTTTTGGTCATGAAATTCTTTTGTATTTTTATT
TCAGTCTTTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAG
CTGTTATTGACTGATTTGAAAATCTTGACTCTCGGTATCTGTATTTCATT
CAGTGTTTTTCTTTTTTAAATTTTATCTAGATTTGTTTTGTATATATTTT
GTATTTTTTTTTTTCGTTTGAAAAATGCCAGATTTCTAATTTTCAATCTT
CTGTTTGTCAGTTCTTATACTTTGTCACTTTAAACTCTAAATTTATTATC
TTACAAAGAGAGGTCTCAACTCGATTTTGTCGTTCAGTTATTAGTCCCGG
AT

Coding sequence (CDS) from alignment at sc0000084:496168..505119-

>TCONS_00008332 ID=TCONS_00008332|Name=TCONS_00008332|organism=Clytia hemisphaerica|type=CDS|length=1995bp|location=Sequence derived from alignment at sc0000084:496168..505119- (Clytia hemisphaerica)
TCTTTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGCTGT
TATTGACTGAAATGATGTGTTGTTAAATCGCAAAGTGCTTTCTGAGCTTG
CAATCCACGAACCTAGGACTTTCCAGTTGTGGATCCAACGTATCAACATT
GGAGCAAGAGAACACAATACAAATTACACCACCGTCATCAGTCAATTGCA
CAATGGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAA
GTGTTCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAG
AGAGACATGCGCAAGATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGG
GCCCTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGT
CTTTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGCTGTT
ATTGACTGAAATGATGTGTTGTTAAATCGCAAAGTGCTTTCTGAGCTTGC
AATCCACGAACCTAGGACTTTCCAGTTGTGGATCCAACGTATCAACATTG
GAGCAAGAGAACACAATACAAATTACACCACCGTCATCAGTCAATTGCAC
AATGGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAG
TGTTCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGA
GAGACATGCGCAAGATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGG
CCCTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGTC
TTTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGCTGTTA
TTGACTGAAATGATGTGTTGTTAAATCGCAAAGTGCTTTCTGAGCTTGCA
ATCCACGAACCTAGGACTTTCCAGTTGTGGATCCAACGTATCAACATTGG
AGCAAGAGAACACAATACAAATTACACCACCGTCATCAGTCAATTGCACA
ATGGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAGT
GTTCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGAG
AGACATGCGCAAGATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGGC
CCTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGTCT
TTAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGCTGTTAT
TGACTGAAATGATGTGTTGTTAAATCGCAAAGTGCTTTCTGAGCTTGCAA
TCCACGAACCTAGGACTTTCCAGTTGTGGATCCAACGTATCAACATTGGA
GCAAGAGAACACAATACAAATTACACCACCGTCATCAGTCAATTGCACAA
TGGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAGTG
TTCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGAGA
GACATGCGCAAGATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGGCC
CTTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAGTCTT
TAGCTCATCTTGCGAAGAAGAGAAAAGAAGATGGCTTACTAGCTGTTATT
GACTGAAATGATGTGTTGTTAAATCGCAAAGTGCTTTCTGAGCTTGCAAT
CCACGAACCTAGGACTTTCCAGTTGTGGATCCAACGTATCAACATTGGAG
CAAGAGAACACAATACAAATTACACCACCGTCATCAGTCAATTGCACAAT
GGTTTCAGAGGTAGACGGAAGAACTGTTATAGCTTGGCAGTACGAAGTGT
TCACAAATCACTTCAATATCAATACATTGGCAGAAAATTAAAGAAGAGAG
ACATGCGCAAGATGTTTCTTTCATTCGCTCATATGGTTAGGGCAGGGCCC
TTCAAGAGGATTATCAAGAAGTCAAAGGTCTTTGCACTTGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004675XLOC_004675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008332-exon-sc0000084-1575043694:504772..505119TCONS_00008332-exon-sc0000084-1575043694:504772..505119Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1575043694:498306..498416TCONS_00008332-exon-sc0000084-1575043694:498306..498416Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1575043694:497542..497619TCONS_00008332-exon-sc0000084-1575043694:497542..497619Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1575043694:496825..496890TCONS_00008332-exon-sc0000084-1575043694:496825..496890Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1575043694:496168..496465TCONS_00008332-exon-sc0000084-1575043694:496168..496465Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1510915933:504772..505119TCONS_00008332-exon-sc0000084-1510915933:504772..505119Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1510915933:498306..498416TCONS_00008332-exon-sc0000084-1510915933:498306..498416Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1510915933:497542..497619TCONS_00008332-exon-sc0000084-1510915933:497542..497619Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1510915933:496825..496890TCONS_00008332-exon-sc0000084-1510915933:496825..496890Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1510915933:496168..496465TCONS_00008332-exon-sc0000084-1510915933:496168..496465Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1491911889:504772..505119TCONS_00008332-exon-sc0000084-1491911889:504772..505119Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1491911889:498306..498416TCONS_00008332-exon-sc0000084-1491911889:498306..498416Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1491911889:497542..497619TCONS_00008332-exon-sc0000084-1491911889:497542..497619Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1491911889:496825..496890TCONS_00008332-exon-sc0000084-1491911889:496825..496890Clytia hemisphaericaexon
TCONS_00008332-exon-sc0000084-1491911889:496168..496465TCONS_00008332-exon-sc0000084-1491911889:496168..496465Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008332-proteinTCONS_00008332-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:496168..505119 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.5469	62.7934	41.1565	36.1195	56.8317	43.8165	44.9531	48.2553	44.7582	37.9948	36.6709	49.6802	36.6884	40.4383	45.9386	49.1429	80.5148	74.5566	9.26491	13.6871	39.011	36.1221	75.8305	59.6954	33.1919	36.648	27.1355	17.931	40.2311	42.1486
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00008332 vs. Swiss-Prot (Human)
Match: RM20 (39S ribosomal protein L20, mitochondrial OS=Homo sapiens GN=MRPL20 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.585e-25
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1 
Query:  265 MFLSFAHMVRAGPFKRIIKKSKVFALAKGFRGRRKNCYSLAVRSVHKSLQYQYIGRKLKKRDMRKLWIQRINIGAREHNTNYTTVISQLHNNDVLLNRKVLSELAIHEPRTFQSLAHLAKKRKEDGLLAVI 657
            +FL+    +R     R  +  +V   A+ FRGR+  CY LAVR+V ++       R LKK++MR LWI RI   ++EH   Y  +I  L    V LNRKVL++LAI+EP+TF+SLA LA +R+ +G  A +
Sbjct:    2 VFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRRHEGFAAAL 132
The following BLAST results are available for this feature:
BLAST of TCONS_00008332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM201.585e-2541.9839S ribosomal protein L20, mitochondrial OS=Homo s... [more]
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