TCONS_00008332-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008332-protein
Unique NameTCONS_00008332-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length132

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008332-protein ID=TCONS_00008332-protein|Name=TCONS_00008332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MFLSFAHMVRAGPFKRIIKKSKVFALAKGFRGRRKNCYSLAVRSVHKSLQ
YQYIGRKLKKRDMRKLWIQRINIGAREHNTNYTTVISQLHNNDVLLNRKV
LSELAIHEPRTFQSLAHLAKKRKEDGLLAVID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004675XLOC_004675Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008332TCONS_00008332Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 48..77
score: 48.59
coord: 81..107
score: 37.49
coord: 18..47
score: 29.49
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 17..119
e-value: 1.8E-33
score: 113.2
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 16..115
e-value: 4.4E-39
score: 132.8
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 60..76
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 7..121
score: 21.929
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 14..116
e-value: 1.06278E-42
score: 137.23
IPR005813Ribosomal protein L20SUPERFAMILY74731Ribosomal protein L20coord: 14..121
NoneNo IPR availableGENE3D1.10.1900.20coord: 61..122
e-value: 5.6E-24
score: 83.2
NoneNo IPR availablePRODOMPD002389coord: 26..78
e-value: 1.0E-14
score: 188.0

Blast
[Close]
BLAST of TCONS_00008332-protein vs. Swiss-Prot (Human)
Match: RM20 (39S ribosomal protein L20, mitochondrial OS=Homo sapiens GN=MRPL20 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.901e-28
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 0 
Query:    1 MFLSFAHMVRAGPFKRIIKKSKVFALAKGFRGRRKNCYSLAVRSVHKSLQYQYIGRKLKKRDMRKLWIQRINIGAREHNTNYTTVISQLHNNDVLLNRKVLSELAIHEPRTFQSLAHLAKKRKEDGLLAVI 131
            +FL+    +R     R  +  +V   A+ FRGR+  CY LAVR+V ++       R LKK++MR LWI RI   ++EH   Y  +I  L    V LNRKVL++LAI+EP+TF+SLA LA +R+ +G  A +
Sbjct:    2 VFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRRHEGFAAAL 132
The following BLAST results are available for this feature:
BLAST of TCONS_00008332-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM201.901e-2841.9839S ribosomal protein L20, mitochondrial OS=Homo s... [more]
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