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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008306 ID=TCONS_00008306|Name=TCONS_00008306|organism=Clytia hemisphaerica|type=transcript|length=1146bp
AAAAATTTCGTACATGTTAGAAGTTGTTTCAAGCTATGGCTAAAAGATGT
TTGCCATCACCAGCTAGTTATTTTCACAAGAAGAGACCTCATATAATGGG
AAACTGTTATCCATAGCAGACTTACCTCACCCGTCTACCTTGCATCGTCA
TAAGAACACTTCAAAATATCGTCGAAAGAAGTATTCCGTTGTGGAAAATT
ATCTACAGCAATTGAAAAAGAAACAGTCTGATTTCCAATGGAATAAAGAA
AATCCTTTAGAAACCTCCTTCGCCTTGGATTCTTCGGCAACATTATCTAG
CACTCAACAATCTACAGACCATGTTGTACCAAACGACCTCGTCGACAACA
CATGCAACACTTTTAACAACAAGTTGAACGCTCATTTGCAACAAGTTGTA
CcaatcaacaacaacaattcTGCAACTTCGTCACGACTTATGGTTTCATC
TCAACAAGTGACACGGtcaccaattttgaccaatggaaacCAGGAATCGA
ACGACTTTGACCATACCGGATATCGCCAATATGCTCGCTTACAACAACAC
CATAACTCAAAAAGACAACATCATACAAACCAACCGAACAATAACAACAG
TCTTTTTGGTGAAGCTAATAGATTCTTAACAACTGGTGAAGTTACAAGAG
ATTCAATGGAGCAATGCAGCACTGATGCTCAAAACGTTTATCGTTACCAC
GGACTTGTACCCAATAAAAATTCTAACTCAACAACTGGAAGCTATTGCCA
AACCTCCGATAGTAGGCATAACAACGAGCGACTTCGTGTCTCCAAGTCAC
AAAATAACAACCGTTTTCAATTGCATACTAGCCTTGAAACTCAACTCCAC
CATCACGATAGCTTTGAAACTCGACACCCTCAACCTCCGTCAGAGCTCTC
GCAACTTTTCTCTTTCCAATTACCACGAAGTgatatttatccagatgaag
aaaGTGAAGAGTATGGGAGAGACCAGGTTTCCCTGCTAGATGAGAATGGC
TTGTTGGTTGATAGAGCGAAAAAGAATTTGTTTGGTTCANcggcaattag
gtccccccctgtttattaaaatctagaaaattttccgacGTTTCTTCGCG
GATGCCACTTTCagaaaaactctgatcaaagatatCTGTCATTATC Run BLAST on NCBI transcript from alignment at sc0000084:53130..60158- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008306 ID=TCONS_00008306|Name=TCONS_00008306|organism=Clytia hemisphaerica|type=transcript|length=7029bp|location=Sequence derived from alignment at sc0000084:53130..60158- (Clytia hemisphaerica)
AAAAATTTCGTACATGTTAGAAGTTGTTTCAAGCTATGGCTAAAAGATGT
TTGCCATCACCAGCTAGTTATTTTCACAAGAAGAGACCTCATATGTAAGA
ATGCAACAGTAACTTTCTAGTTTTGATTATCATAGAGTATTTGTTACTTT
TTAAGAAGTACAAAAGTTAGTTTTCCCTAGCCTTTGTTTTGGTTTTTATC
CTAAACTAAAGTCTATCTAACTTAACGTTACTTTAGTGGCCTCTAGCTTT
TATCCTACTTGATCTTTTTGTGGTCAAATTTATTGTAGAGTCAAGTTTAC
CTATTTTTAGGAATGCGTTTTTTATTCATTTGTTGTCTGAAAAGACCTTA
AAAATCTGAGGCTCTAATAACTTTTAACATTCATTTTTGCCAGAAAATTT
GATAACAAATAAAACAAAACGTAAAATTTAACCAGATTTGATTTCTTTTC
AGTTCATCAGATGTAGTCAGTCAAGAAAAAGGATCAAGGTTGTCAGACAC
AGAAGATATTCAAAAGTATAAATTTATCTTTGTAAATTGTAGAAGTTTTA
TTAGGAACTAAGATGATAGACCTTTAAGTTATTGGATTATAGTTTATAAC
ATTTAAAGTTTGGCCTAACTTCTTCTAAAGCCAGGTAACTTAAAATCTTT
AAAATTTCTTTTACACGGTTCTCGTTAATGTTGTATTGGGCTCTTCCAGA
AAAAATTTGAATATGGGGGTTGCAGGATATAACATTTGTAATTTACCCCC
GGACATTCATAATTACCCCTAAACAGAGCAGTTTTGCCCTCCAAACAAGG
CAAATTTTGTAGATTTTTCACTACCCTCTGGACAAAATATCCAATATATA
TCCTCCACACCCCCTCCCCCATGTAAGAACATTTTCAGGAAGAGCCCATG
GTTTATTTTTGTAACTTGAATATCTTAACTTCGGAAAATACTTAAACAAA
TCCTAATCGTCTCGTACAACGTTAAAGCCACTAACTTAAATTTATTCCGA
TAATTACAAGGGGGAGAGAGCCAAATAATCACTTTTCAGGTGATATTTTT
TTATTGAAAAACTGTAAAGAAAAACTCTTAATCAAGGCTTGCTTTTTTTC
TTTTTAGAAGTCAAACACCAAAGTGTTTTGATGAGATTATCAATCGAAAG
TATGAGGTATAAAATGAAGCTAGTTGTTCAGACTTAACTTCAGCCATCTA
GAAGAAGGGGAAACTAGAGTTTAAAAGTTCATTGCCATTTTCACAGACAC
TTTCAGATAATATCTTATTTTCACGAAACACTTTAAGGGGAAGATTTTTT
TTCGCGAAAGTTCTTATATCCAGCCAGTCATCGAGTTTATTGTCAAATTT
TCAGAAAGCTTCAGCTGTCCATAGTTAATTCGATTTTGGTAAAATGACCC
CTTAAATCACCAAATTTAAAATCCACAAACAGTATTCTAATGCAGGCAGC
TATTCAGTCAATACTAATTATAAAAAAGTTTCGCGTCCAGAATTTTCTAA
TTCTTTTTCTAATTGTTTAACCCCTAATAAATTCGTCAAATTTGAAAATG
AATGTTCCCTCATCAGACTTTGATTTTAAACTTATTTTGATAGTATTTTT
GTCGATAAAAATAGATTTTATTAACAAAAAGTTTTAAGTAATAGTACTGA
CTGATCCAACTCGTTCTCTGGACGCGAGGGTTCTGACATTAAATTAAAAT
AATTTTTCTACAGAGAAATCATTATAATAAAGAGTTGACACAATATTTGT
TTCAAACTCAGAGTTTCATGGTGCTCAGATACCAATCATCAGTGAAATGA
GATACGTTAGAAAATAAAATACAATATTGTTGTCTTCAAAAAATGTTTTT
GACGTCACATTCGAACATCATCAGAGCTATAATTTTCGTTTGTGTCTACA
GAGAAATCTATTTGTTTTGAAAATTAATTCATGATATGCACCATTGAAAT
GTCTTCCATTCCACCCAATAGCTGATTGGTTGAAAGTGACTTATTGACTG
ATTTTACGTCACGTGAAACCAATGAGCGATTGGTTCCGCGATGTAATGTC
AGAAGACATTGCAGTGGTGCATATCATGAATACCAACTTTGCCATAGAAT
GGGAAACTGTTATCCATAGCAGACTTACCTCACCCGTCTACCTTGCATCG
TCATAAGAACACTTCAAAATATCGTCGAAAGAAGTATTCCGTTGTGGAAA
ATTATCTACAGCAATTGAAAAAGAAACAGTCTGATTTCCAATGGTAAGTT
GATACTGGTGCATCTGAGATTCAGAAAAGACCTTAAAAATGGTTTTCGTA
GGGCACCCCTTAGATCAGGGCAAATTTTTTATATTATGCTCCTAATAGGG
TGTAGAATCGACAAAAATAATTTGCCCTTCTAGTCTCCTGCAGTTTTTTT
AGTTTTAATTTAGTTACCTTAAGGGAACTAATTTTTGCGGGAACTAAATT
TTGCGGTTTTTGCGGATTTAGGCCCAAACCGTAAAATTAAGTTCCCGCAA
AATTTTTCAAATGCGAAAACCAAAGGTCGAATGATTCACAGTACGGCTCT
AATTTTCTTTCAAGTGAGAAATCCGCAAAATTAAGTTCCCGCAAATATTG
AGTATTAAATCTTGAACTGCGAACCGCAAAAATTAGTTCCCGCAAAAAAT
AGTTCCCTTAAGGTAATCAATATGCCGTGACCTAAGGGGTGCCCTACGAA
GTGACTCAATTCACTACCTCGGCCGCTGGTCTATGAACAAAATGTTGAAA
TACTTCCATTCCAGCTTTCCTGCTTTTGTGTTATAGAATTAAATAAAAGC
TTCTTTAAGTACACAAGGAAAATCTTTCTCAAAGCGGAAAAAGAAACTCC
ACAGCTTTTCAAATTTAGTGCAATATTTGAACCATATCGATTATTACAAG
TTATTATAAGTTCTCAATAATTTTTCAAAACAGTTTGTTTTGTTACTACG
TTTGCAATAGAATCTATTTTGTGAAAAAGTTGCGGCCTGAAGAATCCTCC
TTGTCCATTTGCTGCAAATAACGGTCGGCCATAGTTTCTAGCGGCCATTC
TAAAGGTTACTTTCTCATTTAGTCCGGCTTATAAGCTGTTTTCGTAATTT
TTGATCATGTTTTAATTACATTTCTTTAGTTCCTCATACTTACCAAATTG
TAAATTATAAAAACTGCTTTTTGTTTTTATGAATTATGAAGTATTTTATT
CCTACCTACAGGAATAAAGAAAATCCCTTAGAAATCTCCTTGGATTCGTC
GTAATTTTTATAATTTTAATTACATTTCTTTAGTTCCTCATACTTGTAAA
TCATAAGAACTGCTTTCTGTTTTTTATGAATTAATAAGTATTTTTTTCCT
ACCTACAGGAATAAAGAAAATCCTTTAGAAACCTCCTTCGCCTTGGATTC
TTCGGCAACATTATCTAGCACTCAACAATCTACAGACCATGTTGTACCAA
ACGACCTCGTCGACAACACATGCAACACTTTTAACAACAAGTTGAACGCT
CATTTGCAACAAGTTGTACCAATCAACAACAACAATTCTGCAACTTCGTC
ACGACTTATGGTTTCATCTCAACAAGTGACACGGTCACCAATTTTGACCA
ATGGAAACCAGGTATCTATTCTTTTTTGATAAACCGGTTTCCATCTTCAT
TATCAATTTTTCAAATGTTTTTTGGCCCAGCTAGCTTTAGCGTACTGGGC
CTTTCATTAGCATTCTGCCCGGTGTCAGTGTGTAACAATTTACTAGGCGA
TACGCGTTTTCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTAAATAAGAGA
TAGCCGAATGGTCTAAGGCGTCTATGGCTTGTATTAGCGACTCCAGGTTC
AAATCCCCTCTGCTACTCAAGTCTTGTTCAGTTAATACTTTTATTCGCTG
GGCCTTCATGCCCTCTGGGCTTCTTGTTTTTTTTTCAAATAGTTTCTCAA
ACTAAAAGAACCACCTTAGAATCTCCTTACAAGCCATGATCTCTCCGCTT
TTATTGCGTGTAGGAGATGTTCATGTTGGCTCCGGAACGTTTCGGAGCAG
GAAAGCCTAGAGCAGTTTTTTTTGTGAAGCTTTATGTCTAAACCTAAACA
CAGGGCATACGCCATAAAATTGAAAGTGGGGGACAATGAAAATAGAGTCT
AAGAGGGCGCAACCATGATTTGTTTATTTTTCAAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGGGGCTGGAACATTTTTCTTAGACATTCAACTTTCTA
TCGATTTTCGCCGTAAATGAGGGAAAGGGAGGCAGAAAGTTGACCATCTT
GACAAGTAGAGCTAAACTATAGCAGGCCTCCCATTTGTCATAAATTCCTA
AATTTTCACAAATTTTCACCAATTTGGTAAAAATGTCATAAATTGTCATA
AATTTTGAAGATTTGTCATAAATTTCCTAAATTTCTTACAAACTTTCCCA
TCAAAGTCATTCTTTAGAAAATATCAACTTTTTATCGATCTTCAGCTGAT
TTAAAGAATTTTTACATAGATTTCACAACACTTTCTTGAAAAAACTCATA
CCTTTTATTGTAACTTGTGGTCAACCAACATGATGTTCTACTTCTATTGG
AAGATTTGTTGTTAATCCTGGAATGCGGCTGAGGCTGAGCCAATATCATG
AAAGATTCATTTTGAATTTAATGAAAATGAGTTTGAATAATCAATTTATT
TGTGTACATAATCAATCTATTTTAATGCTAGGCTGAAAAGTTGTTGTATA
GTTTCATTCTTTAGTTTGCCTCGTTTAAAGTTTAAAGGCTGAAGTGTTTG
AGTTTTTCTGAACCAGACGATGTCAGTCGAACCATCGAACTAATCGAATT
TCATCGAACTAATCGAACGATAGCTGTTCGATTACCGAACATCATCGAAC
AGTTATCGAACCGAGAAATCCCTGTAAAGTTTGATTGTGTTCGATAGCTG
TTCGATGTGTTCGATTTCAATTCCATAGACCTCGACCACCACGCATTCTC
AGAGGCGGCCACAAATGCACCATCAGGGTGGGGCAGAAGTAGTTGGCGCC
CACCCCGTAAAACAAACAGCATTAATTAAGATCTACAAACTAATAGAACT
CTATTTGAACTCTAAACGAACTTAATTGAACAATATATTATTATCGAACT
GTAATCGAACAGTAATTTCCGGTAAAGTTCGATTACTGTTCGATTTAGTT
CGGTAATCGAACAGTTATCGTTCAATTAGTTTGATGAAATTTGATTGTTC
GATTACAAAAATTGGTTTGATAACGTTCGGTTGACATCGTCTGGTCTGAA
CCCAAGTTTTGCATTTTATGCTTCCTTTTATGTTATTGTTCATTTAGTTG
TTTTGATTAAACAGATAATGAATACACAGTGATTACAGTGTCGCAGTTGC
CAGAGGGCCTTGATTTACATAGTTTCTATTCCGCTTTTACTGGACTTGAA
TTCATAGGGCTTAAAACCTGTTAAACAATAATTTGAAAGAGCACAAGAAT
TTTTGTCATAAAAATGTCCTAACTTTTGTTGAAATGTCATAAATTGTCAT
AAATTTTACACCCAAAAATGTCATAAAATGTCCTAAAAAAGCATTAAAAA
CTGTCATAAATTCATAAAAAAATAGCTAAATCAAGAGTGGGAGACCTGCT
ATAAATTTCTATATATCACATCGCAGGAATCGAACGACTTTGACCATACC
GGATATCGCCAATATGCTCGCTTACAACAACACCATAACTCAAAAAGACA
ACATCATACAAACCAACCGAACAATAACAACAGTCTTTTTGGTGAAGCTA
ATAGATTCTTAACAACTGGTGAAGTTACAAGAGATTCAATGGAGCAATGC
AGCACTGATGCTCAAAACGTTTATCGTTACCACGGACTTGTACCCAATAA
AAATTCTAACTCAACAACTGGAAGCTATTGCCAAACCTCCGATAGTAGGC
ATAACAACGAGCGACTTCGTGTCTCCAAGTCACAAAATAACAACCGTTTT
CAATTGCATACTAGCCTTGAAACTCAACTCCACCATCACGATAGCTTTGA
AACTCGACACCCTCAACCTCCGTCAGAGCTCTCGCAACTTTTCTCTTTCC
AATTACCACGAAGTGATATTTATCCAGATGAAGAAAGTGAAGAGTATGGG
AGAGACCAGGTTTCCCTGCTAGATGAGAATGGCTTGTTGGTTGATAGAGC
GAAAAAGAATTTGTTTGGTTCANCGGCAATTAGGTCCCCCCCTGTTTATT
AAAATCTAGAAAATTTTCCGACGTTTCTTCGCGGATGCCACTTTCAGAAA
AACTCTGATCAAAGATATCTGTCATTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008306-exon-sc0000084-1575043694:60065..60158 | TCONS_00008306-exon-sc0000084-1575043694:60065..60158 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1575043694:57916..58061 | TCONS_00008306-exon-sc0000084-1575043694:57916..58061 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1575043694:56548..56800 | TCONS_00008306-exon-sc0000084-1575043694:56548..56800 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1575043694:53130..53782 | TCONS_00008306-exon-sc0000084-1575043694:53130..53782 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1510915933:60065..60158 | TCONS_00008306-exon-sc0000084-1510915933:60065..60158 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1510915933:57916..58061 | TCONS_00008306-exon-sc0000084-1510915933:57916..58061 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1510915933:56548..56800 | TCONS_00008306-exon-sc0000084-1510915933:56548..56800 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1510915933:53130..53782 | TCONS_00008306-exon-sc0000084-1510915933:53130..53782 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1491911889:60065..60158 | TCONS_00008306-exon-sc0000084-1491911889:60065..60158 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1491911889:57916..58061 | TCONS_00008306-exon-sc0000084-1491911889:57916..58061 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1491911889:56548..56800 | TCONS_00008306-exon-sc0000084-1491911889:56548..56800 | Clytia hemisphaerica | exon |
| TCONS_00008306-exon-sc0000084-1491911889:53130..53782 | TCONS_00008306-exon-sc0000084-1491911889:53130..53782 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:53130..60158 - |
Blast
The following BLAST results are available for this feature:
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