TCONS_00008306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008306
Unique NameTCONS_00008306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1146

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008306 ID=TCONS_00008306|Name=TCONS_00008306|organism=Clytia hemisphaerica|type=transcript|length=1146bp
AAAAATTTCGTACATGTTAGAAGTTGTTTCAAGCTATGGCTAAAAGATGT
TTGCCATCACCAGCTAGTTATTTTCACAAGAAGAGACCTCATATAATGGG
AAACTGTTATCCATAGCAGACTTACCTCACCCGTCTACCTTGCATCGTCA
TAAGAACACTTCAAAATATCGTCGAAAGAAGTATTCCGTTGTGGAAAATT
ATCTACAGCAATTGAAAAAGAAACAGTCTGATTTCCAATGGAATAAAGAA
AATCCTTTAGAAACCTCCTTCGCCTTGGATTCTTCGGCAACATTATCTAG
CACTCAACAATCTACAGACCATGTTGTACCAAACGACCTCGTCGACAACA
CATGCAACACTTTTAACAACAAGTTGAACGCTCATTTGCAACAAGTTGTA
CcaatcaacaacaacaattcTGCAACTTCGTCACGACTTATGGTTTCATC
TCAACAAGTGACACGGtcaccaattttgaccaatggaaacCAGGAATCGA
ACGACTTTGACCATACCGGATATCGCCAATATGCTCGCTTACAACAACAC
CATAACTCAAAAAGACAACATCATACAAACCAACCGAACAATAACAACAG
TCTTTTTGGTGAAGCTAATAGATTCTTAACAACTGGTGAAGTTACAAGAG
ATTCAATGGAGCAATGCAGCACTGATGCTCAAAACGTTTATCGTTACCAC
GGACTTGTACCCAATAAAAATTCTAACTCAACAACTGGAAGCTATTGCCA
AACCTCCGATAGTAGGCATAACAACGAGCGACTTCGTGTCTCCAAGTCAC
AAAATAACAACCGTTTTCAATTGCATACTAGCCTTGAAACTCAACTCCAC
CATCACGATAGCTTTGAAACTCGACACCCTCAACCTCCGTCAGAGCTCTC
GCAACTTTTCTCTTTCCAATTACCACGAAGTgatatttatccagatgaag
aaaGTGAAGAGTATGGGAGAGACCAGGTTTCCCTGCTAGATGAGAATGGC
TTGTTGGTTGATAGAGCGAAAAAGAATTTGTTTGGTTCANcggcaattag
gtccccccctgtttattaaaatctagaaaattttccgacGTTTCTTCGCG
GATGCCACTTTCagaaaaactctgatcaaagatatCTGTCATTATC
Run BLAST on NCBI

transcript from alignment at sc0000084:53130..60158-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008306 ID=TCONS_00008306|Name=TCONS_00008306|organism=Clytia hemisphaerica|type=transcript|length=7029bp|location=Sequence derived from alignment at sc0000084:53130..60158- (Clytia hemisphaerica)
AAAAATTTCGTACATGTTAGAAGTTGTTTCAAGCTATGGCTAAAAGATGT TTGCCATCACCAGCTAGTTATTTTCACAAGAAGAGACCTCATATGTAAGA ATGCAACAGTAACTTTCTAGTTTTGATTATCATAGAGTATTTGTTACTTT TTAAGAAGTACAAAAGTTAGTTTTCCCTAGCCTTTGTTTTGGTTTTTATC CTAAACTAAAGTCTATCTAACTTAACGTTACTTTAGTGGCCTCTAGCTTT TATCCTACTTGATCTTTTTGTGGTCAAATTTATTGTAGAGTCAAGTTTAC CTATTTTTAGGAATGCGTTTTTTATTCATTTGTTGTCTGAAAAGACCTTA AAAATCTGAGGCTCTAATAACTTTTAACATTCATTTTTGCCAGAAAATTT GATAACAAATAAAACAAAACGTAAAATTTAACCAGATTTGATTTCTTTTC AGTTCATCAGATGTAGTCAGTCAAGAAAAAGGATCAAGGTTGTCAGACAC AGAAGATATTCAAAAGTATAAATTTATCTTTGTAAATTGTAGAAGTTTTA TTAGGAACTAAGATGATAGACCTTTAAGTTATTGGATTATAGTTTATAAC ATTTAAAGTTTGGCCTAACTTCTTCTAAAGCCAGGTAACTTAAAATCTTT AAAATTTCTTTTACACGGTTCTCGTTAATGTTGTATTGGGCTCTTCCAGA AAAAATTTGAATATGGGGGTTGCAGGATATAACATTTGTAATTTACCCCC GGACATTCATAATTACCCCTAAACAGAGCAGTTTTGCCCTCCAAACAAGG CAAATTTTGTAGATTTTTCACTACCCTCTGGACAAAATATCCAATATATA TCCTCCACACCCCCTCCCCCATGTAAGAACATTTTCAGGAAGAGCCCATG GTTTATTTTTGTAACTTGAATATCTTAACTTCGGAAAATACTTAAACAAA TCCTAATCGTCTCGTACAACGTTAAAGCCACTAACTTAAATTTATTCCGA TAATTACAAGGGGGAGAGAGCCAAATAATCACTTTTCAGGTGATATTTTT TTATTGAAAAACTGTAAAGAAAAACTCTTAATCAAGGCTTGCTTTTTTTC TTTTTAGAAGTCAAACACCAAAGTGTTTTGATGAGATTATCAATCGAAAG TATGAGGTATAAAATGAAGCTAGTTGTTCAGACTTAACTTCAGCCATCTA GAAGAAGGGGAAACTAGAGTTTAAAAGTTCATTGCCATTTTCACAGACAC TTTCAGATAATATCTTATTTTCACGAAACACTTTAAGGGGAAGATTTTTT TTCGCGAAAGTTCTTATATCCAGCCAGTCATCGAGTTTATTGTCAAATTT TCAGAAAGCTTCAGCTGTCCATAGTTAATTCGATTTTGGTAAAATGACCC CTTAAATCACCAAATTTAAAATCCACAAACAGTATTCTAATGCAGGCAGC TATTCAGTCAATACTAATTATAAAAAAGTTTCGCGTCCAGAATTTTCTAA TTCTTTTTCTAATTGTTTAACCCCTAATAAATTCGTCAAATTTGAAAATG AATGTTCCCTCATCAGACTTTGATTTTAAACTTATTTTGATAGTATTTTT GTCGATAAAAATAGATTTTATTAACAAAAAGTTTTAAGTAATAGTACTGA CTGATCCAACTCGTTCTCTGGACGCGAGGGTTCTGACATTAAATTAAAAT AATTTTTCTACAGAGAAATCATTATAATAAAGAGTTGACACAATATTTGT TTCAAACTCAGAGTTTCATGGTGCTCAGATACCAATCATCAGTGAAATGA GATACGTTAGAAAATAAAATACAATATTGTTGTCTTCAAAAAATGTTTTT GACGTCACATTCGAACATCATCAGAGCTATAATTTTCGTTTGTGTCTACA GAGAAATCTATTTGTTTTGAAAATTAATTCATGATATGCACCATTGAAAT GTCTTCCATTCCACCCAATAGCTGATTGGTTGAAAGTGACTTATTGACTG ATTTTACGTCACGTGAAACCAATGAGCGATTGGTTCCGCGATGTAATGTC AGAAGACATTGCAGTGGTGCATATCATGAATACCAACTTTGCCATAGAAT GGGAAACTGTTATCCATAGCAGACTTACCTCACCCGTCTACCTTGCATCG TCATAAGAACACTTCAAAATATCGTCGAAAGAAGTATTCCGTTGTGGAAA ATTATCTACAGCAATTGAAAAAGAAACAGTCTGATTTCCAATGGTAAGTT GATACTGGTGCATCTGAGATTCAGAAAAGACCTTAAAAATGGTTTTCGTA GGGCACCCCTTAGATCAGGGCAAATTTTTTATATTATGCTCCTAATAGGG TGTAGAATCGACAAAAATAATTTGCCCTTCTAGTCTCCTGCAGTTTTTTT AGTTTTAATTTAGTTACCTTAAGGGAACTAATTTTTGCGGGAACTAAATT TTGCGGTTTTTGCGGATTTAGGCCCAAACCGTAAAATTAAGTTCCCGCAA AATTTTTCAAATGCGAAAACCAAAGGTCGAATGATTCACAGTACGGCTCT AATTTTCTTTCAAGTGAGAAATCCGCAAAATTAAGTTCCCGCAAATATTG AGTATTAAATCTTGAACTGCGAACCGCAAAAATTAGTTCCCGCAAAAAAT AGTTCCCTTAAGGTAATCAATATGCCGTGACCTAAGGGGTGCCCTACGAA GTGACTCAATTCACTACCTCGGCCGCTGGTCTATGAACAAAATGTTGAAA TACTTCCATTCCAGCTTTCCTGCTTTTGTGTTATAGAATTAAATAAAAGC TTCTTTAAGTACACAAGGAAAATCTTTCTCAAAGCGGAAAAAGAAACTCC ACAGCTTTTCAAATTTAGTGCAATATTTGAACCATATCGATTATTACAAG TTATTATAAGTTCTCAATAATTTTTCAAAACAGTTTGTTTTGTTACTACG TTTGCAATAGAATCTATTTTGTGAAAAAGTTGCGGCCTGAAGAATCCTCC TTGTCCATTTGCTGCAAATAACGGTCGGCCATAGTTTCTAGCGGCCATTC TAAAGGTTACTTTCTCATTTAGTCCGGCTTATAAGCTGTTTTCGTAATTT TTGATCATGTTTTAATTACATTTCTTTAGTTCCTCATACTTACCAAATTG TAAATTATAAAAACTGCTTTTTGTTTTTATGAATTATGAAGTATTTTATT CCTACCTACAGGAATAAAGAAAATCCCTTAGAAATCTCCTTGGATTCGTC GTAATTTTTATAATTTTAATTACATTTCTTTAGTTCCTCATACTTGTAAA TCATAAGAACTGCTTTCTGTTTTTTATGAATTAATAAGTATTTTTTTCCT ACCTACAGGAATAAAGAAAATCCTTTAGAAACCTCCTTCGCCTTGGATTC TTCGGCAACATTATCTAGCACTCAACAATCTACAGACCATGTTGTACCAA ACGACCTCGTCGACAACACATGCAACACTTTTAACAACAAGTTGAACGCT CATTTGCAACAAGTTGTACCAATCAACAACAACAATTCTGCAACTTCGTC ACGACTTATGGTTTCATCTCAACAAGTGACACGGTCACCAATTTTGACCA ATGGAAACCAGGTATCTATTCTTTTTTGATAAACCGGTTTCCATCTTCAT TATCAATTTTTCAAATGTTTTTTGGCCCAGCTAGCTTTAGCGTACTGGGC CTTTCATTAGCATTCTGCCCGGTGTCAGTGTGTAACAATTTACTAGGCGA TACGCGTTTTCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGTAAATAAGAGA TAGCCGAATGGTCTAAGGCGTCTATGGCTTGTATTAGCGACTCCAGGTTC AAATCCCCTCTGCTACTCAAGTCTTGTTCAGTTAATACTTTTATTCGCTG GGCCTTCATGCCCTCTGGGCTTCTTGTTTTTTTTTCAAATAGTTTCTCAA ACTAAAAGAACCACCTTAGAATCTCCTTACAAGCCATGATCTCTCCGCTT TTATTGCGTGTAGGAGATGTTCATGTTGGCTCCGGAACGTTTCGGAGCAG GAAAGCCTAGAGCAGTTTTTTTTGTGAAGCTTTATGTCTAAACCTAAACA CAGGGCATACGCCATAAAATTGAAAGTGGGGGACAATGAAAATAGAGTCT AAGAGGGCGCAACCATGATTTGTTTATTTTTCAAAAANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNGGGGGCTGGAACATTTTTCTTAGACATTCAACTTTCTA TCGATTTTCGCCGTAAATGAGGGAAAGGGAGGCAGAAAGTTGACCATCTT GACAAGTAGAGCTAAACTATAGCAGGCCTCCCATTTGTCATAAATTCCTA AATTTTCACAAATTTTCACCAATTTGGTAAAAATGTCATAAATTGTCATA AATTTTGAAGATTTGTCATAAATTTCCTAAATTTCTTACAAACTTTCCCA TCAAAGTCATTCTTTAGAAAATATCAACTTTTTATCGATCTTCAGCTGAT TTAAAGAATTTTTACATAGATTTCACAACACTTTCTTGAAAAAACTCATA CCTTTTATTGTAACTTGTGGTCAACCAACATGATGTTCTACTTCTATTGG AAGATTTGTTGTTAATCCTGGAATGCGGCTGAGGCTGAGCCAATATCATG AAAGATTCATTTTGAATTTAATGAAAATGAGTTTGAATAATCAATTTATT TGTGTACATAATCAATCTATTTTAATGCTAGGCTGAAAAGTTGTTGTATA GTTTCATTCTTTAGTTTGCCTCGTTTAAAGTTTAAAGGCTGAAGTGTTTG AGTTTTTCTGAACCAGACGATGTCAGTCGAACCATCGAACTAATCGAATT TCATCGAACTAATCGAACGATAGCTGTTCGATTACCGAACATCATCGAAC AGTTATCGAACCGAGAAATCCCTGTAAAGTTTGATTGTGTTCGATAGCTG TTCGATGTGTTCGATTTCAATTCCATAGACCTCGACCACCACGCATTCTC AGAGGCGGCCACAAATGCACCATCAGGGTGGGGCAGAAGTAGTTGGCGCC CACCCCGTAAAACAAACAGCATTAATTAAGATCTACAAACTAATAGAACT CTATTTGAACTCTAAACGAACTTAATTGAACAATATATTATTATCGAACT GTAATCGAACAGTAATTTCCGGTAAAGTTCGATTACTGTTCGATTTAGTT CGGTAATCGAACAGTTATCGTTCAATTAGTTTGATGAAATTTGATTGTTC GATTACAAAAATTGGTTTGATAACGTTCGGTTGACATCGTCTGGTCTGAA CCCAAGTTTTGCATTTTATGCTTCCTTTTATGTTATTGTTCATTTAGTTG TTTTGATTAAACAGATAATGAATACACAGTGATTACAGTGTCGCAGTTGC CAGAGGGCCTTGATTTACATAGTTTCTATTCCGCTTTTACTGGACTTGAA TTCATAGGGCTTAAAACCTGTTAAACAATAATTTGAAAGAGCACAAGAAT TTTTGTCATAAAAATGTCCTAACTTTTGTTGAAATGTCATAAATTGTCAT AAATTTTACACCCAAAAATGTCATAAAATGTCCTAAAAAAGCATTAAAAA CTGTCATAAATTCATAAAAAAATAGCTAAATCAAGAGTGGGAGACCTGCT ATAAATTTCTATATATCACATCGCAGGAATCGAACGACTTTGACCATACC GGATATCGCCAATATGCTCGCTTACAACAACACCATAACTCAAAAAGACA ACATCATACAAACCAACCGAACAATAACAACAGTCTTTTTGGTGAAGCTA ATAGATTCTTAACAACTGGTGAAGTTACAAGAGATTCAATGGAGCAATGC AGCACTGATGCTCAAAACGTTTATCGTTACCACGGACTTGTACCCAATAA AAATTCTAACTCAACAACTGGAAGCTATTGCCAAACCTCCGATAGTAGGC ATAACAACGAGCGACTTCGTGTCTCCAAGTCACAAAATAACAACCGTTTT CAATTGCATACTAGCCTTGAAACTCAACTCCACCATCACGATAGCTTTGA AACTCGACACCCTCAACCTCCGTCAGAGCTCTCGCAACTTTTCTCTTTCC AATTACCACGAAGTGATATTTATCCAGATGAAGAAAGTGAAGAGTATGGG AGAGACCAGGTTTCCCTGCTAGATGAGAATGGCTTGTTGGTTGATAGAGC GAAAAAGAATTTGTTTGGTTCANCGGCAATTAGGTCCCCCCCTGTTTATT AAAATCTAGAAAATTTTCCGACGTTTCTTCGCGGATGCCACTTTCAGAAA AACTCTGATCAAAGATATCTGTCATTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004664XLOC_004664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008306-exon-sc0000084-1575043694:60065..60158TCONS_00008306-exon-sc0000084-1575043694:60065..60158Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1575043694:57916..58061TCONS_00008306-exon-sc0000084-1575043694:57916..58061Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1575043694:56548..56800TCONS_00008306-exon-sc0000084-1575043694:56548..56800Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1575043694:53130..53782TCONS_00008306-exon-sc0000084-1575043694:53130..53782Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1510915933:60065..60158TCONS_00008306-exon-sc0000084-1510915933:60065..60158Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1510915933:57916..58061TCONS_00008306-exon-sc0000084-1510915933:57916..58061Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1510915933:56548..56800TCONS_00008306-exon-sc0000084-1510915933:56548..56800Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1510915933:53130..53782TCONS_00008306-exon-sc0000084-1510915933:53130..53782Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1491911889:60065..60158TCONS_00008306-exon-sc0000084-1491911889:60065..60158Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1491911889:57916..58061TCONS_00008306-exon-sc0000084-1491911889:57916..58061Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1491911889:56548..56800TCONS_00008306-exon-sc0000084-1491911889:56548..56800Clytia hemisphaericaexon
TCONS_00008306-exon-sc0000084-1491911889:53130..53782TCONS_00008306-exon-sc0000084-1491911889:53130..53782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:53130..60158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27316 1.92692 0 0 0 0 0 0 0.585427 1.21038 0.572481 1.24404 1.18189 0.800843 0.327416 1.00062 1.51782 1.6678 0 0.702487 0 1.25598 1.76596 0.502854 0 0 1.24603 0.831122 0 0.60416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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