Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008276 ID=TCONS_00008276|Name=TCONS_00008276|organism=Clytia hemisphaerica|type=transcript|length=1494bpRun BLAST on NCBI protein sequence of TCONS_00008276-protein >TCONS_00008276-protein ID=TCONS_00008276-protein|Name=TCONS_00008276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp FDISLSDKASIFKSALQPIKLTFRTIQNKDYVAMFKYGDDLRQDQLVLQIRun BLAST on NCBI transcript from alignment at sc0000084:303511..310337+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008276 ID=TCONS_00008276|Name=TCONS_00008276|organism=Clytia hemisphaerica|type=transcript|length=6827bp|location=Sequence derived from alignment at sc0000084:303511..310337+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:303511..310337+ >TCONS_00008276 ID=TCONS_00008276|Name=TCONS_00008276|organism=Clytia hemisphaerica|type=CDS|length=9537bp|location=Sequence derived from alignment at sc0000084:303511..310337+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008276 vs. Swiss-Prot (Human)
Match: PK3C3 (Phosphatidylinositol 3-kinase catalytic subunit type 3 OS=Homo sapiens GN=PIK3C3 PE=1 SV=1) HSP 1 Score: 415.616 bits (1067), Expect = 5.756e-135 Identity = 209/284 (73.59%), Postives = 243/284 (85.56%), Query Frame = 2 Query: 14 LSDKASIFKSALQPIKLTFRTIQNKDYVAMFKYGDDLRQDQLVLQIITLMDKLLRRENLDLKLKPYNVLATSITEGMVQIIESTNVAHILSSYDGSIQSYFRETNPLEGAPYGINPETMETYVKSCAGYCVITYILGVGDRHLDNLLLTKSGNLFHIDFGYILGRDPKPFPPPMKLSKEMVEGMGGTTSEYYQQFRKLCFTAFLHLRRYANLFLNLFSLMVDASIPDIALEPDKAVKKVQDKFRLDLSDEEAVQYLQALIDESVNAVFASLTEQLHKFAQYWRK 865 + + A++FKSAL P +L F+T Y +FK+GDDLRQDQL+LQII+LMDKLLR+ENLDLKL PY VLATS G +Q I+S VA +L + +GSIQ++FR+ P E P GI+ E M+TYVKSCAGYCVITYILGVGDRHLDNLLLTK+G LFHIDFGYILGRDPKP PPPMKL+KEMVEGMGGT SE YQ+FRK C+TAFLHLRRY+NL LNLFSLMVDA+IPDIALEPDK VKKVQDKFRLDLSDEEAV Y+Q+LIDESV+A+FA++ EQ+HKFAQYWRK Sbjct: 605 IPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKENLDLKLTPYKVLATSTKHGFMQFIQSVPVAEVLDT-EGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHIDFGYILGRDPKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAVVEQIHKFAQYWRK 887 The following BLAST results are available for this feature:
BLAST of TCONS_00008276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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