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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=transcript|length=2945bp
Nttaagaacaaatttctaaaaggcttttgttgttctgtaaatatttcttt
ttggatcaagaaattttttattgttctaatgattataatatttctttata
agatgcattgttgtctttttaatctttgtgtaaatttgcatatgttttgt
atattttccaactaaatccaaccacggctttttcgttcctgtatttttgc
atacaattcaagatggcagatggaaaggcgaaaaggtctattgaataaca
aattactccacacatagcatacattactttccctcagccaaacgggataa
attatcttgtccctAGGTAACAGCTGTGTTGTAAATGACAATTAAATAAG
ATGATGTTATCATTAACAAAATTATGCtagagtaattagttattcaatag
accagtgagttctcccaaacaactattGAAACTCCTGGAGAACCgacagt
gaagtcaagtttgaaattattttgtattagaaaaattttcaaaagaagtc
aaaacgcaatttaccttacctcctgagattgtgtttgttatgctaaaata
taaacctttgtcatgctgtctaattacaaaacCCTCCAATCACAACTCCT
CCaccatcttgtttcactttaaatgccgtgttttaaaattcctcaGCTAC
ATCATATGTACGAAAAAGGTTTTCTCCTAGTTTTTCTCCGTTTTATGGTG
ACAAAAACCTCAGAAAAACAGGATTTCCGAAATATACAATTGATGATTCT
TCGccttttcttcatttcttgGAACAGTGAagtaaaagaatatttttata
ttttttccagCAACAATGCCTAACAGTATTTTATGTAACATCTTAAGGAC
ACATCCAAAAGATGCTCTCcaattgaaagacttttatGAGACTCTTTTGG
CAATGAAATATTCTAAAATTGAATCTAAAACCACAAGGCATATGTTTGTA
TTTGATCATCAAAAGCCTGCAACAGGAGTATGTTTTGAAGAATGTACTGA
TAGCTTTGAAACAAACCCAAGTCAATCAGGATATTGGAAAATTGGTTTCA
CTTTACATGACGTTGATGAAGCATTGAAAGTCATCCATAAAAATACTGTT
GAAAAAAGACGTGGGTCACAATTTGAAAAGATTGGATATGTTAGCCATGT
TTGTGATCCTTTGGGTTATACGATCGAATTATTACAACACTCATTTGAAG
AGAATTTTCGAGCATTAAAGGGTGTGGAGAGGGCATTTCTTGGTCAACCA
CATTCAACGCCAGTCATGTTTGGCCAAATAACCATCCGTTGTAAAGATGC
TGAATCATCTTgtgatttttattcaaaagtgcTGGGAATGAAATTAATGT
CAATTCAACCCTCAATCAATTATCCATTCACTTTGTATTTCTTTGCATAC
ACTGACTTGAATCCTCCAAATACAGATGATCTCAGAGCTATAGAAAATCG
GGAATGGCTTTGGCAGCAGTCGTTTGCTCAAATTGAGCTGCAACACCGAC
ATAACACTACAGGGGAATTCTTCTATATCACAAATGATAAACATGGGCTG
ATAGGTCACAAAGGTTTTCAGATTTCTGTTTCTAAGGATAGATTTGAAAG
TATTAGAGCTTTGGATGGGAAGAACATTAATGAAAGAAACAGTATGTTGA
TAATAAGTGACCCAGATGGCTATCAGATTGAGGTACTTTgtgaataaaga
ttttttctacctTTGGAAACTAATGATTACCATAAACATTGATATGATCA
TTTGAGTATTAGCATTTTATATATGACAATATATGACAACAATGAATAAT
GAGATAAAGAGCGTTACTTTTTATTATTGATTATCTTTCatttaataaaa
taaatcatTGTAAGGAGTAAATTATCTTGGGTTTCTAAAACTTTGTAATT
ATTTGAATTTAGAATATTTGTAAGAAAAACATGATAATATAAAAGAAGAA
GGATCTTTAAATACTTTGatttatcttgattttttttcttttctcattcT
TTTAGATGTGTCTttgaatgaaataaaatatgGAAGTGTCCTACATCAGA
AGACcatacaaaatttctaaaaatgggCAGCGTTTCAAAGGGATTGTTGC
AGCAAATCTTGctgaattaaaagaaaaatccatTCAAAGCTTACAATTTG
AGGAACCTGCAGAGAGCGTTGAGATTTTCTTAGCAGAAGATGACACATTG
GTGGATGATCAAGATTATTTTGCAACCATTCCTGAAAATACTAAACTTTT
AGTGAAACTAAACTCAATTGATACTTCAGATTTGGATCACACTGACGGTC
CTTCACATCATGAGGTCTCGGAAAGCCAAGAGTTTAGCAGCAGGCCTTGT
GAAATCCCACGTGATTTGGCAAACAAAATCACACAGCTGGGTCCATCTGG
TAGTGTTCTAGGCATCTTGAGCATGTCAAATAGTGAATTGGAAACACTGA
TAGGCTTACcattaaatatttttgttgaagaattgaattttgatttggaT
ATTGCTCGTGTTTTTTTAGATAGCGCTGGAAAAGAATTAACAAGAAGAAG
TGACCTCAATGATGCTACAAATTTGTTAAAACTTTATGACCGTGCCAAAG
CTAATCAAGATAGAGTAGATGGtggcaaaagaaagaagaaaatatgataa
aacgtgttttggattttttaatggattttgaattgttgaattttgatata
tttatgATACTCTTGTAATTAACGTCCAGTTTTATTAGTGCTCTTACCTT
CAAATCATGAACAAAACCTTTGAATATGTGGAATTTTGAAATCctgtaat
ttttgtaatttttttaagatgagatcaattttattgtaaattttttagtc
AAGCTTAAAAACTAAATGTACATAATTGTAGGTAGAAGGCCAATTTTAAG
ATATAAAATTTTAACAATATAAAGTTgtattcaattaaaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00008242-protein >TCONS_00008242-protein ID=TCONS_00008242-protein|Name=TCONS_00008242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MPNSILCNILRTHPKDALQLKDFYETLLAMKYSKIESKTTRHMFVFDHQK
PATGVCFEECTDSFETNPSQSGYWKIGFTLHDVDEALKVIHKNTVEKRRG
SQFEKIGYVSHVCDPLGYTIELLQHSFEENFRALKGVERAFLGQPHSTPV
MFGQITIRCKDAESSCDFYSKVLGMKLMSIQPSINYPFTLYFFAYTDLNP
PNTDDLRAIENREWLWQQSFAQIELQHRHNTTGEFFYITNDKHGLIGHKG
FQISVSKDRFESIRALDGKNINERNSMLIISDPDGYQIEVLCE Run BLAST on NCBI transcript from alignment at sc0000082:655674..658618 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at sc0000082:655674..658618 (Clytia hemisphaerica)
tttttttttaattgaatacAACTTTATATTGTTAAAATTTTATATCTTAA
AATTGGCCTTCTACCTACAATTATGTACATTTAGTTTTTAAGCTTgacta
aaaaatttacaataaaattgatctcatcttaaaaaaattacaaaaattac
agGATTTCAAAATTCCACATATTCAAAGGTTTTGTTCATGATTTGAAGGT
AAGAGCACTAATAAAACTGGACGTTAATTACAAGAGTATcataaatatat
caaaattcaacaattcaaaatccattaaaaaatccaaaacacgttttatc
atattttcttctttcttttgccaCCATCTACTCTATCTTGATTAGCTTTG
GCACGGTCATAAAGTTTTAACAAATTTGTAGCATCATTGAGGTCACTTCT
TCTTGTTAATTCTTTTCCAGCGCTATCTAAAAAAACACGAGCAATAtcca
aatcaaaattcaattcttcaacaaaaatatttaatgGTAAGCCTATCAGT
GTTTCCAATTCACTATTTGACATGCTCAAGATGCCTAGAACACTACCAGA
TGGACCCAGCTGTGTGATTTTGTTTGCCAAATCACGTGGGATTTCACAAG
GCCTGCTGCTAAACTCTTGGCTTTCCGAGACCTCATGATGTGAAGGACCG
TCAGTGTGATCCAAATCTGAAGTATCAATTGAGTTTAGTTTCACTAAAAG
TTTAGTATTTTCAGGAATGGTTGCAAAATAATCTTGATCATCCACCAATG
TGTCATCTTCTGCTAAGAAAATCTCAACGCTCTCTGCAGGTTCCTCAAAT
TGTAAGCTTTGAatggatttttcttttaattcagCAAGATTTGCTGCAAC
AATCCCTTTGAAACGCTGcccatttttagaaattttgtatgGTCTTCTGA
TGTAGGACACTTCcatattttatttcattcaaAGACACATCTAAAAgaat
gagaaaagaaaaaaaatcaagataaatCAAAGTATTTAAAGATCCTTCTT
CTTTTATATTATCATGTTTTTCTTACAAATATTCTAAATTCAAATAATTA
CAAAGTTTTAGAAACCCAAGATAATTTACTCCTTACAatgatttatttta
ttaaatGAAAGATAATCAATAATAAAAAGTAACGCTCTTTATCTCATTAT
TCATTGTTGTCATATATTGTCATATATAAAATGCTAATACTCAAATGATC
ATATCAATGTTTATGGTAATCATTAGTTTCCAAaggtagaaaaaatcttt
attcacAAAGTACCTCAATCTGATAGCCATCTGGGTCACTTATTATCAAC
ATACTGTTTCTTTCATTAATGTTCTTCCCATCCAAAGCTCTAATACTTTC
AAATCTATCCTTAGAAACAGAAATCTGAAAACCTTTGTGACCTATCAGCC
CATGTTTATCATTTGTGATATAGAAGAATTCCCCTGTAGTGTTATGTCGG
TGTTGCAGCTCAATTTGAGCAAACGACTGCTGCCAAAGCCATTCCCGATT
TTCTATAGCTCTGAGATCATCTGTATTTGGAGGATTCAAGTCAGTGTATG
CAAAGAAATACAAAGTGAATGGATAATTGATTGAGGGTTGAATTGACATT
AATTTCATTCCCAgcacttttgaataaaaatcacAAGATGATTCAGCATC
TTTACAACGGATGGTTATTTGGCCAAACATGACTGGCGTTGAATGTGGTT
GACCAAGAAATGCCCTCTCCACACCCTTTAATGCTCGAAAATTCTCTTCA
AATGAGTGTTGTAATAATTCGATCGTATAACCCAAAGGATCACAAACATG
GCTAACATATCCAATCTTTTCAAATTGTGACCCACGTCTTTTTTCAACAG
TATTTTTATGGATGACTTTCAATGCTTCATCAACGTCATGTAAAGTGAAA
CCAATTTTCCAATATCCTGATTGACTTGGGTTTGTTTCAAAGCTATCAGT
ACATTCTTCAAAACATACTCCTGTTGCAGGCTTTTGATGATCAAATACAA
ACATATGCCTTGTGGTTTTAGATTCAATTTTAGAATATTTCATTGCCAAA
AGAGTCTCataaaagtctttcaattgGAGAGCATCTTTTGGATGTGTCCT
TAAGATGTTACATAAAATACTGTTAGGCATTGTTGctggaaaaaatataa
aaatattcttttactTCACTGTTCcaagaaatgaagaaaaggCGAAGAAT
CATCAATTGTATATTTCGGAAATCCTGTTTTTCTGAGGTTTTTGTCACCA
TAAAACGGAGAAAAACTAGGAGAAAACCTTTTTCGTACATATGATGTAGC
tgaggaattttaaaacacggcatttaaagtgaaacaagatggtGGAGGAG
TTGTGATTGGAGGgttttgtaattagacagcatgacaaaggtttatattt
tagcataacaaacacaatctcaggaggtaaggtaaattgcgttttgactt
cttttgaaaatttttctaatacaaaataatttcaaacttgacttcactgt
cGGTTCTCCAGGAGTTTCaatagttgtttgggagaactcactggtctatt
gaataactaattactctaGCATAATTTTGTTAATGATAACATCATCTTAT
TTAATTGTCATTTACAACACAGCTGTTACCTagggacaagataatttatc
ccgtttggctgagggaaagtaatgtatgctatgtgtggagtaatttgtta
ttcaatagaccttttcgcctttccatctgccatcttgaattgtatgcaaa
aatacaggaacgaaaaagccgtggttggatttagttggaaaatatacaaa
acatatgcaaatttacacaaagattaaaaagacaacaatgcatcttataa
agaaatattataatcattagaacaataaaaaatttcttgatccaaaaaga
aatatttacagaacaacaaaagccttttagaaatttgttcttaaN Coding sequence (CDS) from alignment at sc0000082:655674..658618 >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000082:655674..658618 (Clytia hemisphaerica)
ttattcacAAAGTACCTCAATCTGATAGCCATCTGGGTCACTTATTATCA
ACATACTGTTTCTTTCATTAATGTTCTTCCCATCCAAAGCTCTAATACTT
TCAAATCTATCCTTAGAAACAGAAATCTGAAAACCTTTGTGACCTATCAG
CCCATGTTTATCATTTGTGATATAGAAGAATTCCCCTGTAGTGTTATGTC
GGTGTTGCAGCTCAATTTGAGCAAACGACTGCTGCCAAAGCCATTCCCGA
TTTTCTATAGCTCTGAGATCATCTGTATTTGGAGGATTCAAGTCAGTGTA
TGCAAAGAAATACAAAGTGAATGGATAATTGATTGAGGGTTGAATTGACA
TTAATTTCATTCCCAgcacttttgaataaaaatcacAAGATGATTCAGCA
TCTTTACAACGGATGGTTATTTGGCCAAACATGACTGGCGTTGAATGTGG
TTGACCAAGAAATGCCCTCTCCACACCCTTTAATGCTCGAAAATTCTCTT
CAAATGAGTGTTGTAATAATTCGATCGTATAACCCAAAGGATCACAAACA
TGGCTAACATATCCAATCTTTTCAAATTGTGACCCACGTCTTTTTTCAAC
AGTATTTTTATGGATGACTTTCAATGCTTCATCAACGTCATGTAAAGTGA
AACCAATTTTCCAATATCCTGATTGACTTGGGTTTGTTTCAAAGCTATCA
GTACATTCTTCAAAACATACTCCTGTTGCAGGCTTTTGATGATCAAATAC
AAACATATGCCTTGTGGTTTTAGATTCAATTTTAGAATATTTCATTGCCA
AAAGAGTCTCataaaagtctttcaattgGAGAGCATCTTTTGGATGTGTC
CTTAAGATGTTACATAAAATACTGTTAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008242-exon-sc0000082-1491911889:655674..658618 | TCONS_00008242-exon-sc0000082-1491911889:655674..658618 | Clytia hemisphaerica | exon |
| TCONS_00008242-exon-sc0000082-1510915933:655674..658618 | TCONS_00008242-exon-sc0000082-1510915933:655674..658618 | Clytia hemisphaerica | exon |
| TCONS_00008242-exon-sc0000082-1575043694:655674..658618 | TCONS_00008242-exon-sc0000082-1575043694:655674..658618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:655674..658618 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR004360 | Glyas_Fos-R_dOase_dom |
| IPR029068 | Glyas_Bleomycin-R_OHBP_Dase |
Blast
The following BLAST results are available for this feature:
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