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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=transcript|length=2945bp Nttaagaacaaatttctaaaaggcttttgttgttctgtaaatatttcttt ttggatcaagaaattttttattgttctaatgattataatatttctttata agatgcattgttgtctttttaatctttgtgtaaatttgcatatgttttgt atattttccaactaaatccaaccacggctttttcgttcctgtatttttgc atacaattcaagatggcagatggaaaggcgaaaaggtctattgaataaca aattactccacacatagcatacattactttccctcagccaaacgggataa attatcttgtccctAGGTAACAGCTGTGTTGTAAATGACAATTAAATAAG ATGATGTTATCATTAACAAAATTATGCtagagtaattagttattcaatag accagtgagttctcccaaacaactattGAAACTCCTGGAGAACCgacagt gaagtcaagtttgaaattattttgtattagaaaaattttcaaaagaagtc aaaacgcaatttaccttacctcctgagattgtgtttgttatgctaaaata taaacctttgtcatgctgtctaattacaaaacCCTCCAATCACAACTCCT CCaccatcttgtttcactttaaatgccgtgttttaaaattcctcaGCTAC ATCATATGTACGAAAAAGGTTTTCTCCTAGTTTTTCTCCGTTTTATGGTG ACAAAAACCTCAGAAAAACAGGATTTCCGAAATATACAATTGATGATTCT TCGccttttcttcatttcttgGAACAGTGAagtaaaagaatatttttata ttttttccagCAACAATGCCTAACAGTATTTTATGTAACATCTTAAGGAC ACATCCAAAAGATGCTCTCcaattgaaagacttttatGAGACTCTTTTGG CAATGAAATATTCTAAAATTGAATCTAAAACCACAAGGCATATGTTTGTA TTTGATCATCAAAAGCCTGCAACAGGAGTATGTTTTGAAGAATGTACTGA TAGCTTTGAAACAAACCCAAGTCAATCAGGATATTGGAAAATTGGTTTCA CTTTACATGACGTTGATGAAGCATTGAAAGTCATCCATAAAAATACTGTT GAAAAAAGACGTGGGTCACAATTTGAAAAGATTGGATATGTTAGCCATGT TTGTGATCCTTTGGGTTATACGATCGAATTATTACAACACTCATTTGAAG AGAATTTTCGAGCATTAAAGGGTGTGGAGAGGGCATTTCTTGGTCAACCA CATTCAACGCCAGTCATGTTTGGCCAAATAACCATCCGTTGTAAAGATGC TGAATCATCTTgtgatttttattcaaaagtgcTGGGAATGAAATTAATGT CAATTCAACCCTCAATCAATTATCCATTCACTTTGTATTTCTTTGCATAC ACTGACTTGAATCCTCCAAATACAGATGATCTCAGAGCTATAGAAAATCG GGAATGGCTTTGGCAGCAGTCGTTTGCTCAAATTGAGCTGCAACACCGAC ATAACACTACAGGGGAATTCTTCTATATCACAAATGATAAACATGGGCTG ATAGGTCACAAAGGTTTTCAGATTTCTGTTTCTAAGGATAGATTTGAAAG TATTAGAGCTTTGGATGGGAAGAACATTAATGAAAGAAACAGTATGTTGA TAATAAGTGACCCAGATGGCTATCAGATTGAGGTACTTTgtgaataaaga ttttttctacctTTGGAAACTAATGATTACCATAAACATTGATATGATCA TTTGAGTATTAGCATTTTATATATGACAATATATGACAACAATGAATAAT GAGATAAAGAGCGTTACTTTTTATTATTGATTATCTTTCatttaataaaa taaatcatTGTAAGGAGTAAATTATCTTGGGTTTCTAAAACTTTGTAATT ATTTGAATTTAGAATATTTGTAAGAAAAACATGATAATATAAAAGAAGAA GGATCTTTAAATACTTTGatttatcttgattttttttcttttctcattcT TTTAGATGTGTCTttgaatgaaataaaatatgGAAGTGTCCTACATCAGA AGACcatacaaaatttctaaaaatgggCAGCGTTTCAAAGGGATTGTTGC AGCAAATCTTGctgaattaaaagaaaaatccatTCAAAGCTTACAATTTG AGGAACCTGCAGAGAGCGTTGAGATTTTCTTAGCAGAAGATGACACATTG GTGGATGATCAAGATTATTTTGCAACCATTCCTGAAAATACTAAACTTTT AGTGAAACTAAACTCAATTGATACTTCAGATTTGGATCACACTGACGGTC CTTCACATCATGAGGTCTCGGAAAGCCAAGAGTTTAGCAGCAGGCCTTGT GAAATCCCACGTGATTTGGCAAACAAAATCACACAGCTGGGTCCATCTGG TAGTGTTCTAGGCATCTTGAGCATGTCAAATAGTGAATTGGAAACACTGA TAGGCTTACcattaaatatttttgttgaagaattgaattttgatttggaT ATTGCTCGTGTTTTTTTAGATAGCGCTGGAAAAGAATTAACAAGAAGAAG TGACCTCAATGATGCTACAAATTTGTTAAAACTTTATGACCGTGCCAAAG CTAATCAAGATAGAGTAGATGGtggcaaaagaaagaagaaaatatgataa aacgtgttttggattttttaatggattttgaattgttgaattttgatata tttatgATACTCTTGTAATTAACGTCCAGTTTTATTAGTGCTCTTACCTT CAAATCATGAACAAAACCTTTGAATATGTGGAATTTTGAAATCctgtaat ttttgtaatttttttaagatgagatcaattttattgtaaattttttagtc AAGCTTAAAAACTAAATGTACATAATTGTAGGTAGAAGGCCAATTTTAAG ATATAAAATTTTAACAATATAAAGTTgtattcaattaaaaaaaaa Run BLAST on NCBI protein sequence of TCONS_00008242-protein >TCONS_00008242-protein ID=TCONS_00008242-protein|Name=TCONS_00008242-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MPNSILCNILRTHPKDALQLKDFYETLLAMKYSKIESKTTRHMFVFDHQK PATGVCFEECTDSFETNPSQSGYWKIGFTLHDVDEALKVIHKNTVEKRRG SQFEKIGYVSHVCDPLGYTIELLQHSFEENFRALKGVERAFLGQPHSTPV MFGQITIRCKDAESSCDFYSKVLGMKLMSIQPSINYPFTLYFFAYTDLNP PNTDDLRAIENREWLWQQSFAQIELQHRHNTTGEFFYITNDKHGLIGHKG FQISVSKDRFESIRALDGKNINERNSMLIISDPDGYQIEVLCE Run BLAST on NCBI transcript from alignment at sc0000082:655674..658618 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at sc0000082:655674..658618 (Clytia hemisphaerica) tttttttttaattgaatacAACTTTATATTGTTAAAATTTTATATCTTAA
AATTGGCCTTCTACCTACAATTATGTACATTTAGTTTTTAAGCTTgacta
aaaaatttacaataaaattgatctcatcttaaaaaaattacaaaaattac
agGATTTCAAAATTCCACATATTCAAAGGTTTTGTTCATGATTTGAAGGT
AAGAGCACTAATAAAACTGGACGTTAATTACAAGAGTATcataaatatat
caaaattcaacaattcaaaatccattaaaaaatccaaaacacgttttatc
atattttcttctttcttttgccaCCATCTACTCTATCTTGATTAGCTTTG
GCACGGTCATAAAGTTTTAACAAATTTGTAGCATCATTGAGGTCACTTCT
TCTTGTTAATTCTTTTCCAGCGCTATCTAAAAAAACACGAGCAATAtcca
aatcaaaattcaattcttcaacaaaaatatttaatgGTAAGCCTATCAGT
GTTTCCAATTCACTATTTGACATGCTCAAGATGCCTAGAACACTACCAGA
TGGACCCAGCTGTGTGATTTTGTTTGCCAAATCACGTGGGATTTCACAAG
GCCTGCTGCTAAACTCTTGGCTTTCCGAGACCTCATGATGTGAAGGACCG
TCAGTGTGATCCAAATCTGAAGTATCAATTGAGTTTAGTTTCACTAAAAG
TTTAGTATTTTCAGGAATGGTTGCAAAATAATCTTGATCATCCACCAATG
TGTCATCTTCTGCTAAGAAAATCTCAACGCTCTCTGCAGGTTCCTCAAAT
TGTAAGCTTTGAatggatttttcttttaattcagCAAGATTTGCTGCAAC
AATCCCTTTGAAACGCTGcccatttttagaaattttgtatgGTCTTCTGA
TGTAGGACACTTCcatattttatttcattcaaAGACACATCTAAAAgaat
gagaaaagaaaaaaaatcaagataaatCAAAGTATTTAAAGATCCTTCTT
CTTTTATATTATCATGTTTTTCTTACAAATATTCTAAATTCAAATAATTA
CAAAGTTTTAGAAACCCAAGATAATTTACTCCTTACAatgatttatttta
ttaaatGAAAGATAATCAATAATAAAAAGTAACGCTCTTTATCTCATTAT
TCATTGTTGTCATATATTGTCATATATAAAATGCTAATACTCAAATGATC
ATATCAATGTTTATGGTAATCATTAGTTTCCAAaggtagaaaaaatcttt
attcacAAAGTACCTCAATCTGATAGCCATCTGGGTCACTTATTATCAAC
ATACTGTTTCTTTCATTAATGTTCTTCCCATCCAAAGCTCTAATACTTTC
AAATCTATCCTTAGAAACAGAAATCTGAAAACCTTTGTGACCTATCAGCC
CATGTTTATCATTTGTGATATAGAAGAATTCCCCTGTAGTGTTATGTCGG
TGTTGCAGCTCAATTTGAGCAAACGACTGCTGCCAAAGCCATTCCCGATT
TTCTATAGCTCTGAGATCATCTGTATTTGGAGGATTCAAGTCAGTGTATG
CAAAGAAATACAAAGTGAATGGATAATTGATTGAGGGTTGAATTGACATT
AATTTCATTCCCAgcacttttgaataaaaatcacAAGATGATTCAGCATC
TTTACAACGGATGGTTATTTGGCCAAACATGACTGGCGTTGAATGTGGTT
GACCAAGAAATGCCCTCTCCACACCCTTTAATGCTCGAAAATTCTCTTCA
AATGAGTGTTGTAATAATTCGATCGTATAACCCAAAGGATCACAAACATG
GCTAACATATCCAATCTTTTCAAATTGTGACCCACGTCTTTTTTCAACAG
TATTTTTATGGATGACTTTCAATGCTTCATCAACGTCATGTAAAGTGAAA
CCAATTTTCCAATATCCTGATTGACTTGGGTTTGTTTCAAAGCTATCAGT
ACATTCTTCAAAACATACTCCTGTTGCAGGCTTTTGATGATCAAATACAA
ACATATGCCTTGTGGTTTTAGATTCAATTTTAGAATATTTCATTGCCAAA
AGAGTCTCataaaagtctttcaattgGAGAGCATCTTTTGGATGTGTCCT
TAAGATGTTACATAAAATACTGTTAGGCATTGTTGctggaaaaaatataa
aaatattcttttactTCACTGTTCcaagaaatgaagaaaaggCGAAGAAT
CATCAATTGTATATTTCGGAAATCCTGTTTTTCTGAGGTTTTTGTCACCA
TAAAACGGAGAAAAACTAGGAGAAAACCTTTTTCGTACATATGATGTAGC
tgaggaattttaaaacacggcatttaaagtgaaacaagatggtGGAGGAG
TTGTGATTGGAGGgttttgtaattagacagcatgacaaaggtttatattt
tagcataacaaacacaatctcaggaggtaaggtaaattgcgttttgactt
cttttgaaaatttttctaatacaaaataatttcaaacttgacttcactgt
cGGTTCTCCAGGAGTTTCaatagttgtttgggagaactcactggtctatt
gaataactaattactctaGCATAATTTTGTTAATGATAACATCATCTTAT
TTAATTGTCATTTACAACACAGCTGTTACCTagggacaagataatttatc
ccgtttggctgagggaaagtaatgtatgctatgtgtggagtaatttgtta
ttcaatagaccttttcgcctttccatctgccatcttgaattgtatgcaaa
aatacaggaacgaaaaagccgtggttggatttagttggaaaatatacaaa
acatatgcaaatttacacaaagattaaaaagacaacaatgcatcttataa
agaaatattataatcattagaacaataaaaaatttcttgatccaaaaaga
aatatttacagaacaacaaaagccttttagaaatttgttcttaaN Coding sequence (CDS) from alignment at sc0000082:655674..658618 >TCONS_00008242 ID=TCONS_00008242|Name=TCONS_00008242|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000082:655674..658618 (Clytia hemisphaerica) ttattcacAAAGTACCTCAATCTGATAGCCATCTGGGTCACTTATTATCA ACATACTGTTTCTTTCATTAATGTTCTTCCCATCCAAAGCTCTAATACTT TCAAATCTATCCTTAGAAACAGAAATCTGAAAACCTTTGTGACCTATCAG CCCATGTTTATCATTTGTGATATAGAAGAATTCCCCTGTAGTGTTATGTC GGTGTTGCAGCTCAATTTGAGCAAACGACTGCTGCCAAAGCCATTCCCGA TTTTCTATAGCTCTGAGATCATCTGTATTTGGAGGATTCAAGTCAGTGTA TGCAAAGAAATACAAAGTGAATGGATAATTGATTGAGGGTTGAATTGACA TTAATTTCATTCCCAgcacttttgaataaaaatcacAAGATGATTCAGCA TCTTTACAACGGATGGTTATTTGGCCAAACATGACTGGCGTTGAATGTGG TTGACCAAGAAATGCCCTCTCCACACCCTTTAATGCTCGAAAATTCTCTT CAAATGAGTGTTGTAATAATTCGATCGTATAACCCAAAGGATCACAAACA TGGCTAACATATCCAATCTTTTCAAATTGTGACCCACGTCTTTTTTCAAC AGTATTTTTATGGATGACTTTCAATGCTTCATCAACGTCATGTAAAGTGA AACCAATTTTCCAATATCCTGATTGACTTGGGTTTGTTTCAAAGCTATCA GTACATTCTTCAAAACATACTCCTGTTGCAGGCTTTTGATGATCAAATAC AAACATATGCCTTGTGGTTTTAGATTCAATTTTAGAATATTTCATTGCCA AAAGAGTCTCataaaagtctttcaattgGAGAGCATCTTTTGGATGTGTC CTTAAGATGTTACATAAAATACTGTTAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008242-exon-sc0000082-1491911889:655674..658618 | TCONS_00008242-exon-sc0000082-1491911889:655674..658618 | Clytia hemisphaerica | exon |
TCONS_00008242-exon-sc0000082-1510915933:655674..658618 | TCONS_00008242-exon-sc0000082-1510915933:655674..658618 | Clytia hemisphaerica | exon |
TCONS_00008242-exon-sc0000082-1575043694:655674..658618 | TCONS_00008242-exon-sc0000082-1575043694:655674..658618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000082 | supercontig | sc0000082:655674..658618 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004360 | Glyas_Fos-R_dOase_dom |
IPR029068 | Glyas_Bleomycin-R_OHBP_Dase |
Blast
The following BLAST results are available for this feature:
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