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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008188 ID=TCONS_00008188|Name=TCONS_00008188|organism=Clytia hemisphaerica|type=transcript|length=1096bp ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA AGGTGACAAACGGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGGA GGTATCCATGCAAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCAT GAACAAGtTGCTTACAAACAAAGCGGATGATCGTGTGTCAAGAGTCTTAG CCAAATACGATTTCTACTTGATGCCCGTTTTCAACATTGATGGGTACAAA TACACTTTCACGAATCGATCAACTCGATTGTGGCGCAAGACAAGGacaaa atacaaagaaagtaaACCACCTTATAAAACGTGTTACGGAGCAGACCCCA ACAGAAATTGGGATAGTCATTGGGAAACAGGTATCAACGCCAGTGACAAT TGTACAACAGATTACTACAGAGGGCCTTTTGCAGGATCTGAAAAATGTGT TGCAAACGTCCAAACGTTTCTTCGTCAACTGAAGAACTTAACTTCGTATT GGAATATCCATGCTTTCAGTCAGCTTGTCCTCACAACGTGGTCTTGGACG AGCGCCCTATCGAAAGATTATCCAGAAATTAAGCGTGTTGGAGATGTTTT CGCCGAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCAC CTTCAAGATTTCTGTACCCAGCTTCAGGTTGCAGTATTGATTTCGCACAT GATGAGCTGAAAGTCGTCTACTCTTACGGTCTAGAACTGAGAGATAAAGG CCATTATGGTTTCGTTCTCCCAGCTAATCAAATTCAACCAAGTGGAGAAG AGACTAGTGACGCTCTACTAGCCGCTGTCCTCGCCATGAAACCAGAATAT CAAATGTTTTCCTCTTCGAGAGCAACCAGGATACGATTCCTCAATGATCC AgcagttttgtttattttagtaTTTCTATCTAATCTTTTCATATATAGAA ATTGTTCAtaaatgtaaatattttttgaattatctTACCTTAGGGTTCAG AAATACAGGCTTGAAATAACCTGATCTACACATACCCATGTCCTTT Run BLAST on NCBI transcript from alignment at sc0000082:548991..551467- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008188 ID=TCONS_00008188|Name=TCONS_00008188|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0000082:548991..551467- (Clytia hemisphaerica) ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT
TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA
AGGTTAGTGTGGAGTTCTTTATTGAAGTGTAGATTCAAGAGATAGTACCT
TCACTATTTAACTTAACCACCATACGTTATCTATTTGACAGGTGACAAAC
GGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGGAGGTATCCATGC
AAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCATGAACAAGGTGT
GTTTTGGGTATTAGGTGTTGTTTTTCTTCTTCTTTCCATGTTGCCAATGA
TCGACGAGGAAAGGTTTTTTCTTATTTTCTTTCGTTTTCAGTTGCTTACA
AACAAAGCGGATGATCGTGTGTCAAGAGTCTTAGCCAAATACGATTTCTA
CTTGATGCCCGTTTTCAACATTGATGGGTACAAATACACTTTCACGAATC
GATCAACTCGATTGTGGCGCAAGACAAGGACAAAATACAAAGAAAGTAAA
CCACCTTATAAAACGTGTTACGGAGCAGACCCCAACAGAAATTGGGATAG
TCATTGGGAAACAGGTACTCTATAATACCTTTCCAACTTTTTATTTCCGT
GCCTTGTAAAGGAAATTACTAGTGACTAGTTTGGGGAGATTAAAGTAAAA
TGTGTACCCTCTGTTAGGGTTAGGGTTAGTGTACCCCTGTTTCAGTGACA
CTGAATTTATTTTAAGTTAGTGAGGGTAGAGTAGTGTCGTAGTTAAATAA
CAATTGACTAAACATCGCCATACGTGGGATGAATGGGATGTAAATTTTAG
GGGATCTCAGAACACCAGGTCCAGATCTCCTTTAGCCAGTAAGGAAGAAT
GGAAAGCGAAATAAGTAAGTGACGTGGTGCTAATCTGATAGTTAATAACT
GTACTTTATTACAGCTCTTCTTTCCAAAAGCATCAATGTAAACTTTCAAA
CCTTATTTTCTAAGTATGATACCGCTCTTCAAATCATAGTATTGGAAACT
GTGTTGAATTCAAAGTCAGTTGTACAATAAATTTTCAAACCCACGTTCCC
TTGTTCAGGTATCAACGCCAGTGACAATTGTACAACAGATTACTACAGAG
GGCCTTTTGCAGGATCTGAAAAATGTGTTGCAAACGTCCAAACGTTTCTT
CGTCAACTGAAGAACTTAACTTCGTATTGGAATATCCATGCTTTCAGTCA
GCTTGTCCTCACAACGTGGTCTTGGACGAGCGCCCTATCGAAAGATTATC
CAGAAATTGTAAGCCTTTCAATTTTGCAACACGTTAAATTATAATCCATA
ACCAGCCGATAATTTTAAAAACAACAAAACAAAAGAAAGTCCGAAAAGAT
TCATTCTGACATCAAAAATCTTGAAGTAGCAGACGAAGTAATCTCAAGTA
AAATATGCAAATTTTTGCAAAGATTTTTGCCTGAATGATGTATTAGATAG
AATACGAAATATAGCATATTTTACTTGAGATCACTTCGTCTGTTACTTCA
AGATTTTTGATGTCAGAATGAATCCTTTCGGACTTTCTTTTGTTTTGTTG
TTGTTAAATTATAAATTCATACAATATTGACAAAGACGTGTTGTTACACG
CATCTTGTGTATTAATATTTTATTCTTCCTGGCATTCTTTCTACTTGTCA
CATTTAAGTAAGTTGCTCTCATTCTTCATTCATGTTTATTGGACTTCCAA
GAGACGGTAACATTGGTTGCAGATCAATATATCAATCGCCCATAACCATC
CTTAGCATTCTTCTTTTTATGTATAGAAGCGTGTTGGAGATGTTTTCGCC
GAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCACCTTC
AAGATTTCTGTGTAAGTATCCTTCAATGTTTCAAAAGCCTGGTTTAGACA
TTTCATACATTCTATACGAGCCTGATCAGGCCAACTTAAGTTTTAAGTGT
AAATGATGCAAATCAATTTGACTTGAGGAGTTGGTGAGTCAAAACTTGAG
AAAGAAGTTAATAATCAACCATCACCTCTTCATCTCTTTCGTTCAGACCC
AGCTTCAGGTTGCAGTATTGATTTCGCACATGATGAGCTGAAAGTCGTCT
ACTCTTACGGTCTAGAACTGAGAGATAAAGGCCATTATGGTTTCGTTCTC
CCAGCTAATCAAATTCAACCAAGTGGAGAAGAGACTAGTGACGCTCTACT
AGCCGCTGTCCTCGCCATGAAACCAGAATATCAAATGTTTTCCTCTTCGA
GAGCAACCAGGATACGATTCCTCAATGATCCAGCAGTTTTGTTTATTTTA
GTATTTCTATCTAATCTTTTCATATATAGAAATTGTTCATAAATGTAAAT
ATTTTTTGAATTATCTTACCTTAGGGTTCAGAAATACAGGCTTGAAATAA
CCTGATCTACACATACCCATGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008188-exon-sc0000082-1575043694:551366..551467 | TCONS_00008188-exon-sc0000082-1575043694:551366..551467 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1575043694:551172..551276 | TCONS_00008188-exon-sc0000082-1575043694:551172..551276 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1575043694:550854..551076 | TCONS_00008188-exon-sc0000082-1575043694:550854..551076 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1575043694:550160..550359 | TCONS_00008188-exon-sc0000082-1575043694:550160..550359 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1575043694:549557..549641 | TCONS_00008188-exon-sc0000082-1575043694:549557..549641 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1575043694:548991..549371 | TCONS_00008188-exon-sc0000082-1575043694:548991..549371 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:551366..551467 | TCONS_00008188-exon-sc0000082-1510915933:551366..551467 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:551172..551276 | TCONS_00008188-exon-sc0000082-1510915933:551172..551276 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:550854..551076 | TCONS_00008188-exon-sc0000082-1510915933:550854..551076 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:550160..550359 | TCONS_00008188-exon-sc0000082-1510915933:550160..550359 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:549557..549641 | TCONS_00008188-exon-sc0000082-1510915933:549557..549641 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1510915933:548991..549371 | TCONS_00008188-exon-sc0000082-1510915933:548991..549371 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:551366..551467 | TCONS_00008188-exon-sc0000082-1491911889:551366..551467 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:551172..551276 | TCONS_00008188-exon-sc0000082-1491911889:551172..551276 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:550854..551076 | TCONS_00008188-exon-sc0000082-1491911889:550854..551076 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:550160..550359 | TCONS_00008188-exon-sc0000082-1491911889:550160..550359 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:549557..549641 | TCONS_00008188-exon-sc0000082-1491911889:549557..549641 | Clytia hemisphaerica | exon |
TCONS_00008188-exon-sc0000082-1491911889:548991..549371 | TCONS_00008188-exon-sc0000082-1491911889:548991..549371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000082 | supercontig | sc0000082:548991..551467 - |
Blast
BLAST of TCONS_00008188 vs. Swiss-Prot (Human)
Match: CBPO (Carboxypeptidase O OS=Homo sapiens GN=CPO PE=1 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 9.934e-65 Identity = 115/295 (38.98%), Postives = 176/295 (59.66%), Query Frame = 1
Query: 1 IKEELLHLSRKHSSKAFLFNVGKTYEGEDQIGIKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKLLTNKADDR-VSRVLAKYDFYLMPVFNIDGYKYTFTNRSTRLWRKTRTKYKESKPPYKTCYGADPNRNWDSHWETGINASDNCTTDYYRGPFAGSEKCVANVQTFLRQLKN-LTSYWNIHAFSQLVLTTWSWTSALSKDYPEIKRVGDVFAEAVSKRYGTHYKVGPPSRFLYPASGCSIDFAHDELKVVYSYGLELRDKGHYGFVLPANQIQPSGEETSDALLAAV 879
I E + +S K+ +G TYE +K++ G K ++W+D GIHAREWI+PA +F+ ++L N D+ + ++L DFY++PV NIDGY YT+T + RLWRK+R+ + TC+G D NRN+++ W I AS NC + G SE V +F+ K+ + + +H++ QL+LT + +T S ++PE+ +VG A A+ +YGT+Y+VG + LY +SG S D+A D + + +SY ELRD G YGFVLP QIQP+ EET +A+L+ +
Sbjct: 56 IYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWT--TDRLWRKSRSPHNNG-----TCFGTDLNRNFNASW-CSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADILYASSGSSRDWARD-IGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVL 341
The following BLAST results are available for this feature:
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