TCONS_00008188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008188
Unique NameTCONS_00008188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008188 ID=TCONS_00008188|Name=TCONS_00008188|organism=Clytia hemisphaerica|type=transcript|length=1096bp
ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT
TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA
AGGTGACAAACGGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGGA
GGTATCCATGCAAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCAT
GAACAAGtTGCTTACAAACAAAGCGGATGATCGTGTGTCAAGAGTCTTAG
CCAAATACGATTTCTACTTGATGCCCGTTTTCAACATTGATGGGTACAAA
TACACTTTCACGAATCGATCAACTCGATTGTGGCGCAAGACAAGGacaaa
atacaaagaaagtaaACCACCTTATAAAACGTGTTACGGAGCAGACCCCA
ACAGAAATTGGGATAGTCATTGGGAAACAGGTATCAACGCCAGTGACAAT
TGTACAACAGATTACTACAGAGGGCCTTTTGCAGGATCTGAAAAATGTGT
TGCAAACGTCCAAACGTTTCTTCGTCAACTGAAGAACTTAACTTCGTATT
GGAATATCCATGCTTTCAGTCAGCTTGTCCTCACAACGTGGTCTTGGACG
AGCGCCCTATCGAAAGATTATCCAGAAATTAAGCGTGTTGGAGATGTTTT
CGCCGAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCAC
CTTCAAGATTTCTGTACCCAGCTTCAGGTTGCAGTATTGATTTCGCACAT
GATGAGCTGAAAGTCGTCTACTCTTACGGTCTAGAACTGAGAGATAAAGG
CCATTATGGTTTCGTTCTCCCAGCTAATCAAATTCAACCAAGTGGAGAAG
AGACTAGTGACGCTCTACTAGCCGCTGTCCTCGCCATGAAACCAGAATAT
CAAATGTTTTCCTCTTCGAGAGCAACCAGGATACGATTCCTCAATGATCC
AgcagttttgtttattttagtaTTTCTATCTAATCTTTTCATATATAGAA
ATTGTTCAtaaatgtaaatattttttgaattatctTACCTTAGGGTTCAG
AAATACAGGCTTGAAATAACCTGATCTACACATACCCATGTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0000082:548991..551467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008188 ID=TCONS_00008188|Name=TCONS_00008188|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0000082:548991..551467- (Clytia hemisphaerica)
ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT
TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA
AGGTTAGTGTGGAGTTCTTTATTGAAGTGTAGATTCAAGAGATAGTACCT
TCACTATTTAACTTAACCACCATACGTTATCTATTTGACAGGTGACAAAC
GGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGGAGGTATCCATGC
AAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCATGAACAAGGTGT
GTTTTGGGTATTAGGTGTTGTTTTTCTTCTTCTTTCCATGTTGCCAATGA
TCGACGAGGAAAGGTTTTTTCTTATTTTCTTTCGTTTTCAGTTGCTTACA
AACAAAGCGGATGATCGTGTGTCAAGAGTCTTAGCCAAATACGATTTCTA
CTTGATGCCCGTTTTCAACATTGATGGGTACAAATACACTTTCACGAATC
GATCAACTCGATTGTGGCGCAAGACAAGGACAAAATACAAAGAAAGTAAA
CCACCTTATAAAACGTGTTACGGAGCAGACCCCAACAGAAATTGGGATAG
TCATTGGGAAACAGGTACTCTATAATACCTTTCCAACTTTTTATTTCCGT
GCCTTGTAAAGGAAATTACTAGTGACTAGTTTGGGGAGATTAAAGTAAAA
TGTGTACCCTCTGTTAGGGTTAGGGTTAGTGTACCCCTGTTTCAGTGACA
CTGAATTTATTTTAAGTTAGTGAGGGTAGAGTAGTGTCGTAGTTAAATAA
CAATTGACTAAACATCGCCATACGTGGGATGAATGGGATGTAAATTTTAG
GGGATCTCAGAACACCAGGTCCAGATCTCCTTTAGCCAGTAAGGAAGAAT
GGAAAGCGAAATAAGTAAGTGACGTGGTGCTAATCTGATAGTTAATAACT
GTACTTTATTACAGCTCTTCTTTCCAAAAGCATCAATGTAAACTTTCAAA
CCTTATTTTCTAAGTATGATACCGCTCTTCAAATCATAGTATTGGAAACT
GTGTTGAATTCAAAGTCAGTTGTACAATAAATTTTCAAACCCACGTTCCC
TTGTTCAGGTATCAACGCCAGTGACAATTGTACAACAGATTACTACAGAG
GGCCTTTTGCAGGATCTGAAAAATGTGTTGCAAACGTCCAAACGTTTCTT
CGTCAACTGAAGAACTTAACTTCGTATTGGAATATCCATGCTTTCAGTCA
GCTTGTCCTCACAACGTGGTCTTGGACGAGCGCCCTATCGAAAGATTATC
CAGAAATTGTAAGCCTTTCAATTTTGCAACACGTTAAATTATAATCCATA
ACCAGCCGATAATTTTAAAAACAACAAAACAAAAGAAAGTCCGAAAAGAT
TCATTCTGACATCAAAAATCTTGAAGTAGCAGACGAAGTAATCTCAAGTA
AAATATGCAAATTTTTGCAAAGATTTTTGCCTGAATGATGTATTAGATAG
AATACGAAATATAGCATATTTTACTTGAGATCACTTCGTCTGTTACTTCA
AGATTTTTGATGTCAGAATGAATCCTTTCGGACTTTCTTTTGTTTTGTTG
TTGTTAAATTATAAATTCATACAATATTGACAAAGACGTGTTGTTACACG
CATCTTGTGTATTAATATTTTATTCTTCCTGGCATTCTTTCTACTTGTCA
CATTTAAGTAAGTTGCTCTCATTCTTCATTCATGTTTATTGGACTTCCAA
GAGACGGTAACATTGGTTGCAGATCAATATATCAATCGCCCATAACCATC
CTTAGCATTCTTCTTTTTATGTATAGAAGCGTGTTGGAGATGTTTTCGCC
GAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCACCTTC
AAGATTTCTGTGTAAGTATCCTTCAATGTTTCAAAAGCCTGGTTTAGACA
TTTCATACATTCTATACGAGCCTGATCAGGCCAACTTAAGTTTTAAGTGT
AAATGATGCAAATCAATTTGACTTGAGGAGTTGGTGAGTCAAAACTTGAG
AAAGAAGTTAATAATCAACCATCACCTCTTCATCTCTTTCGTTCAGACCC
AGCTTCAGGTTGCAGTATTGATTTCGCACATGATGAGCTGAAAGTCGTCT
ACTCTTACGGTCTAGAACTGAGAGATAAAGGCCATTATGGTTTCGTTCTC
CCAGCTAATCAAATTCAACCAAGTGGAGAAGAGACTAGTGACGCTCTACT
AGCCGCTGTCCTCGCCATGAAACCAGAATATCAAATGTTTTCCTCTTCGA
GAGCAACCAGGATACGATTCCTCAATGATCCAGCAGTTTTGTTTATTTTA
GTATTTCTATCTAATCTTTTCATATATAGAAATTGTTCATAAATGTAAAT
ATTTTTTGAATTATCTTACCTTAGGGTTCAGAAATACAGGCTTGAAATAA
CCTGATCTACACATACCCATGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004604XLOC_004604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008188-exon-sc0000082-1575043694:551366..551467TCONS_00008188-exon-sc0000082-1575043694:551366..551467Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1575043694:551172..551276TCONS_00008188-exon-sc0000082-1575043694:551172..551276Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1575043694:550854..551076TCONS_00008188-exon-sc0000082-1575043694:550854..551076Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1575043694:550160..550359TCONS_00008188-exon-sc0000082-1575043694:550160..550359Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1575043694:549557..549641TCONS_00008188-exon-sc0000082-1575043694:549557..549641Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1575043694:548991..549371TCONS_00008188-exon-sc0000082-1575043694:548991..549371Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:551366..551467TCONS_00008188-exon-sc0000082-1510915933:551366..551467Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:551172..551276TCONS_00008188-exon-sc0000082-1510915933:551172..551276Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:550854..551076TCONS_00008188-exon-sc0000082-1510915933:550854..551076Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:550160..550359TCONS_00008188-exon-sc0000082-1510915933:550160..550359Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:549557..549641TCONS_00008188-exon-sc0000082-1510915933:549557..549641Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1510915933:548991..549371TCONS_00008188-exon-sc0000082-1510915933:548991..549371Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:551366..551467TCONS_00008188-exon-sc0000082-1491911889:551366..551467Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:551172..551276TCONS_00008188-exon-sc0000082-1491911889:551172..551276Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:550854..551076TCONS_00008188-exon-sc0000082-1491911889:550854..551076Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:550160..550359TCONS_00008188-exon-sc0000082-1491911889:550160..550359Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:549557..549641TCONS_00008188-exon-sc0000082-1491911889:549557..549641Clytia hemisphaericaexon
TCONS_00008188-exon-sc0000082-1491911889:548991..549371TCONS_00008188-exon-sc0000082-1491911889:548991..549371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:548991..551467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.19756	0.999719	1.09955	0	3.46868	4.45838	0.368947	0.140923	0.0879636	0.161312	2.70977	1.63837	0.531616	1.05081	0.154672	0.33365	0	0	0.372206	0	0.0791641	0
Blast
[Close]
BLAST of TCONS_00008188 vs. Swiss-Prot (Human)
Match: CBPO (Carboxypeptidase O OS=Homo sapiens GN=CPO PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.934e-65
Identity = 115/295 (38.98%), Postives = 176/295 (59.66%), Query Frame = 1 
Query:    1 IKEELLHLSRKHSSKAFLFNVGKTYEGEDQIGIKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKLLTNKADDR-VSRVLAKYDFYLMPVFNIDGYKYTFTNRSTRLWRKTRTKYKESKPPYKTCYGADPNRNWDSHWETGINASDNCTTDYYRGPFAGSEKCVANVQTFLRQLKN-LTSYWNIHAFSQLVLTTWSWTSALSKDYPEIKRVGDVFAEAVSKRYGTHYKVGPPSRFLYPASGCSIDFAHDELKVVYSYGLELRDKGHYGFVLPANQIQPSGEETSDALLAAV 879
            I E +  +S K+        +G TYE      +K++   G  K ++W+D GIHAREWI+PA   +F+ ++L N  D+  + ++L   DFY++PV NIDGY YT+T  + RLWRK+R+ +        TC+G D NRN+++ W   I AS NC    + G    SE     V +F+   K+ +  +  +H++ QL+LT + +T   S ++PE+ +VG   A A+  +YGT+Y+VG  +  LY +SG S D+A D + + +SY  ELRD G YGFVLP  QIQP+ EET +A+L+ +
Sbjct:   56 IYEWMREISEKYKEVVTQHFLGVTYETHPMYYLKISQPSGNPKKIIWMDCGIHAREWIAPAFCQWFVKEILQNHKDNSSIRKLLRNLDFYVLPVLNIDGYIYTWT--TDRLWRKSRSPHNNG-----TCFGTDLNRNFNASW-CSIGASRNCQDQTFCGTGPVSEPETKAVASFIESKKDDILCFLTMHSYGQLILTPYGYTKNKSSNHPEMIQVGQKAANALKAKYGTNYRVGSSADILYASSGSSRDWARD-IGIPFSYTFELRDSGTYGFVLPEAQIQPTCEETMEAVLSVL 341
The following BLAST results are available for this feature:
BLAST of TCONS_00008188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBPO9.934e-6538.98Carboxypeptidase O OS=Homo sapiens GN=CPO PE=1 SV=... [more]
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