TCONS_00008185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008185
Unique NameTCONS_00008185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008185 ID=TCONS_00008185|Name=TCONS_00008185|organism=Clytia hemisphaerica|type=transcript|length=1428bp
ataaatattttaaaatgaaaaattttgacaaCGCAGCATTGTTTCAAGCC
ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT
TATTTGGTCCAAAGCAAAcctgtgatgacgtcattcaataTAGACAATTC
CACGTTGTTGCATAGAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCAC
CATCAGAACCGCCTNCCACGTTGTTGCATAGGAACCAAACCTTCTTCATG
AGCAGCCTGCTTCCACCATCAGAACCGCCTACCGCCCTCAACCATTCATT
ATCCTTCGTCAATGTGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTT
GCATCATCGGAGGGAACGTTCTTGTCATCAGTGCTTTCATGACCAACGGG
AGGAAGATCCAGACTATCACAAACTATTTTGTCGTCTCACTGGCGGTCTC
TGATATTTTGGTGGGAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAA
TaaaccACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCTTGCTTTG
GACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCATTAGTTT
AGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAACTTATCCC
GCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGGCTTCGCC
ATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGTGGAAGGC
GTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCCCTCATTA
TTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACATATCTCc
gaacaaaagaaattgaaacaagAAATGCGATTGGCTGGAATGATCgctat
tgttattattttgttcATAGTTTGTTGGTTCCCATTCTTCCTCATTAACA
TTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCATTATCGAA
AAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTATGATGAA
CCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCTTTCAAGA
ATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAGATCAGCT
TCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACTTCATGGA
CTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCCGTGTAAA
ATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAGGAGATGAAAGAG
AAAACTTTCTgtttaaacatttttcaaacatttcaaaCTGACTTCTCCTT
TTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTGCAATTTTAAGAA
ATATAAGAATATCTAACCAAGGCAATTC
Run BLAST on NCBI

protein sequence of TCONS_00008185-protein

>TCONS_00008185-protein ID=TCONS_00008185-protein|Name=TCONS_00008185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MTSFNIDNSTLLHRNQTFFMSSLLPPSEPPXTLLHRNQTFFMSSLLPPSE
PPTALNHSLSFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITN
YFVVSLAVSDILVGVFSVPFWMLVEINHEQSSSLPHIVFLALDVMLGVAS
IVHLTVISLERLFAVIRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSF
VKTYYGWKAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHISEQKKLKQE
MRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKF
LHYSNSMMNPLVYAYRNSDYRQAFKNLLLSLLKRQALRKRSASGLSSGTG
RSDLDDFMDSVQNLNQMSKHESAV
Run BLAST on NCBI

transcript from alignment at sc0000082:534727..538066-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008185 ID=TCONS_00008185|Name=TCONS_00008185|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at sc0000082:534727..538066- (Clytia hemisphaerica)
ATAAATATTTTAAAATGAAAAATTTTGACAACGCAGCATTGTTTCAAGCC
ATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAGTCAGT
TATTTGGTCCAAAGGTATTGTTAATTTTCTCTCATTCCCCGTGAGTATCT
ATTTCGCCAATTAGAACGATTTCATTCGTTTTTTTTCTTGTCTGCAACAA
ACCCGATATTTGCAGGAACTGCTGAATTAATTTCTATGATCTATAAGTGT
TTGCTGTTTTTTGTCAATTTATCATAGTTTAATTTATCGAGCTTTTTTTT
TTCTTCTCCTCGAACAGTATTTAAATACTTCGGTTGACAAACAAGCAAAA
GAAACGATATTTTCCTGTTCGCCGATAAAAAGCAAAGTATCCGCTCATTA
ATTATTGACTTTGAAAAAGTTCAAGCAAGAAAACATTTTTTTGTTATTTT
TCATTTTGGATACAAAGTATCAGAGGGGAAAGATTTTCTTCTTATTTCTA
CCAATATTGCAGTCGAAGAATCATGAATAATTGAAGGTGCAGCTTTTGTT
GTTTTGCCTTTTTCTCCTCAGCTTCATCTCTTATTTTCGCATCTCCTCTT
TTCTTTTTCTTCGTCGTTAAAAACATTTTGATGTGATTGGACTTCATCTC
AACTTCATGTCGTGAAAAGGTAAACGAGGAAAATGGACAACGTTTTTAAT
TTAAAATTCCAAAGTCTGCATTCTAGCTCTTTCAATCNTTTTAAGGCCAA
AAACTTCAAATCATTTGATTATCCTTTGAAGCTCTTTTTCTCTATTTCCA
GTTTAATAAATATTTTAAAATGAAAAATTTTGACAACGCAGCATTGTTTC
AAGCCATGTCGGAAGAGATGGCTGATCTGGGAAATATTGTTGTCTTAGAG
TCAGTTATTTGGTCCAAAGGTATTGTTAATTTTCTCTCATTCCCCGTGAG
TATCTATTTCGCCAATTAGAACGATTTCATTCGTTTTTTTTCTTGTCTGC
AACAAACCCGATATTTGCAGGAACTGCTGAATTAATTTCTATGATCTATA
AGTGTTTGCTGTTTTTTGTCAATTTATCATAGTTTAATTTATCGAGCTTT
TTTTTTTCTTCTCCTCGAACAGTATTTAAATACTTCGGTTGACAAACAAG
CAAAAGAAACGATATTTTCCTGTTCGCCGATAAAAAGCAAAGTATCCGCT
CATTAATTATTGACTTTGAAAAAGTTCAAGCAAGAAAACATTTTTTTGTT
ATTTTTCATTTTGGATACAAAGTATCAGAGGGGAAAGATTTTCTTCTTAT
TTCTACCAATATTGCAGTCGAAGAATCATGAATAATTGAAGGTGCAGCTT
TTGTTGTTTTGCCTTTTTCTCCTCAGCTTCATCTCTTATTTTCGCATCTC
CTCTTTTCTTTTTCTTCGTCGTTAAAAACATTTTGATGTGATTGGACTTC
ATCTCAACTTCATGTCGTGAAAAGGTAAACGAGGAAAATGGACAACGTTT
TTAATTTAAAATTCCAAAGTCTGCATTCTAGCTCTTTCAATCAATGTCGA
ATCTTTGCATTAGCTTGCTTCAGATATGCTCGCATTCATGTTTTCCCCAA
CATTCAACTCAGTTGTATTAGTTAATATAACCCTCCCCCATTTTGACAGC
TTTCACAACTCATCTTATTTCATTTTGGATATGGAATTTTTTTCAAACCT
GGGGAAACTGGGGTCAATTCTCATTGTGATCATTTTTAGGATATCGTAAA
AATCAAAATCATAAAATTCAATCGCAACGATTCTAAAATATCACTCCGTT
TTCAGCAAACCTGTGATGACGTCATTCAATATAGACAATTCCACGTTGTT
GCATAGAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAAC
CGCCTNCCACGTTGTTGCATAGGAACCAAACCTTCTTCATGAGCAGCCTG
CTTCCACCATCAGAACCGCCTACCGCCCTCAACCATTCATTATCCTTCGT
CAATGTGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTTGCATCATCG
GAGGGAACGTTCTTGTCATCAGTGCTTTCATGACCAACGGGAGGAAGATC
CAGACTATCACAAACTATTTTGTCGTCTCACTGGCGGTCTCTGATATTTT
GGTGGGAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAATAAGTAAGA
TTTTTTTTATGTGAATGAAAATGAAAGTTCTGTCAAGGATATTTCGAGTG
TGAAAGTTTATCAGTGATTTGCGTTTATTGTTTATTTCCAACAATTCAAA
ATATCCACAAGTACCCATTTACCATTACTCTACCATTATTGCTAGAATTC
GCAGCTAAGCATGCTTTGATAATTGAATAAGCAGATCTCGTCATTTTCTT
TTTTCTTTTTTTCAGACCACGAACAGTCATCTAGTCTGCCACATATCGTC
TTTCTTGCTTTGGACGTCATGTTAGGTGTGGCATCGATCGTCCATCTAAC
TGTCATTAGTTTAGAGAGATTGTTTGCCGTCATCCGCCCTGCCACCCATC
GCAACTTATCCCGCCAAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTT
TGGGGCTTCGCCATCGTCAATTCTGCGTTATCTTTCGTGAAAACGTACTA
CGGGTGGAAGGCGTATAATATTTACATCGTGGTGATTGGCTTTGTGGTCC
CCGCCCTCATTATTGTCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAA
CAACATATCTCCGAACAAAAGAAATTGAAACAAGAAATGCGATTGGCTGG
AATGATCGCTATTGTTATTATTTTGTTCATAGTTTGTTGGTTCCCATTCT
TCCTCATTAACATTTTGTACGAATATTGTTACCCTCCAGAATGCAGTCAC
GTCATTATCGAAAAATCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAA
CTCTATGATGAACCCCTTGGTTTACGCGTACCGAAATTCGGACTATAGAC
AAGCTTTCAAGAATCTTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGA
AAAAGATCAGCTTCGGGTCTATCTTCGGGCACAGGACGCTCAGATCTTGA
TGACTTCATGGACTCGGTACAGAATTTGAATCAAATGAGCAAGCATGAAT
CTGCCGTGTAAAATCTCTCCAAACAACCTCTCATGAAGTAGAAGGAGGAG
GAGATGAAAGAGAAAACTTTCTGTTTAAACATTTTTCAAACATTTCAAAC
TGACTTCTCCTTTTTTTGTGAAGGTTTAATTTGATTATAAATCTAAGGTG
CAATTTTAAGAAATATAAGAATATCTAACCAAGGCAATTC

Coding sequence (CDS) from alignment at sc0000082:534727..538066-

>TCONS_00008185 ID=TCONS_00008185|Name=TCONS_00008185|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at sc0000082:534727..538066- (Clytia hemisphaerica)
ACCACGAACAGTCATCTAGTCTGCCACATATCGTCTTTCTTGCTTTGGAC
GTCATGTTAGGTGTGGCATCGATCGTCCATCTAACTGTCATTAGTTTAGA
GAGATTGTTTGCCGTCATCCGCCCTGCCACCCATCGCAACTTATCCCGCC
AAACGCACTTGGTTCGTATCGCTGTCTTCGCTGTTTGGGGCTTCGCCATC
GTCAATTCTGCGTTATCTTTCGTGAAAACGTACTACGGGTGGAAGGCGTA
TAATATTTACATCGTGGTGATTGGCTTTGTGGTCCCCGCCCTCATTATTG
TCTGTTCGTATGTGGCTATCTACCGCGTGGCCCAACAACATATCTCCGAA
CAAAAGAAATTGAAACAAGAAATGCGATTGGCTGGAATGATCGCTATTGT
TATTATTTTGTTCATAGTTTGTTGGTTCCCATTCTTCCTCATTAACATTT
TGTACGAATATTGTTACCCTCCAGAATGCAGTCACGTCATTATCGAAAAA
TCGATCCCTTTCGTCAAGTTTTTGCATTACTCCAACTCTATGATGAACCC
CTTGGTTTACGCGTACCGAAATTCGGACTATAGACAAGCTTTCAAGAATC
TTCTCCTTTCTTTGTTGAAAAGACAAGCATTGAGAAAAAGATCAGCTTCG
GGTCTATCTTCGGGCACAGGACGCTCAGATCTTGATGACTTCATGGACTC
GGTACAGAATTTGAATCAAATGAGCAAGCATGAATCTGCCGTGTAAATGA
CGTCATTCAATATAGACAATTCCACGTTGTTGCATAGAAACCAAACCTTC
TTCATGAGCAGCCTGCTTCCACCATCAGAACCGCCTNCCACGTTGTTGCA
TAGGAACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCATCAGAACCGC
CTACCGCCCTCAACCATTCATTATCCTTCGTCAATGTGGTCAGCCTTTTG
ATGCTGGGAACGTTGGTGATTTGCATCATCGGAGGGAACGTTCTTGTCAT
CAGTGCTTTCATGACCAACGGGAGGAAGATCCAGACTATCACAAACTATT
TTGTCGTCTCACTGGCGGTCTCTGATATTTTGGTGGGAGTATTCTCCGTA
CCTTTTTGGATGCTGGTCGAAATAAACCACGAACAGTCATCTAGTCTGCC
ACATATCGTCTTTCTTGCTTTGGACGTCATGTTAGGTGTGGCATCGATCG
TCCATCTAACTGTCATTAGTTTAGAGAGATTGTTTGCCGTCATCCGCCCT
GCCACCCATCGCAACTTATCCCGCCAAACGCACTTGGTTCGTATCGCTGT
CTTCGCTGTTTGGGGCTTCGCCATCGTCAATTCTGCGTTATCTTTCGTGA
AAACGTACTACGGGTGGAAGGCGTATAATATTTACATCGTGGTGATTGGC
TTTGTGGTCCCCGCCCTCATTATTGTCTGTTCGTATGTGGCTATCTACCG
CGTGGCCCAACAACATATCTCCGAACAAAAGAAATTGAAACAAGAAATGC
GATTGGCTGGAATGATCGCTATTGTTATTATTTTGTTCATAGTTTGTTGG
TTCCCATTCTTCCTCATTAACATTTTGTACGAATATTGTTACCCTCCAGA
ATGCAGTCACGTCATTATCGAAAAATCGATCCCTTTCGTCAAGTTTTTGC
ATTACTCCAACTCTATGATGAACCCCTTGGTTTACGCGTACCGAAATTCG
GACTATAGACAAGCTTTCAAGAATCTTCTCCTTTCTTTGTTGAAAAGACA
AGCATTGAGAAAAAGATCAGCTTCGGGTCTATCTTCGGGCACAGGACGCT
CAGATCTTGATGACTTCATGGACTCGGTACAGAATTTGAATCAAATGAGC
AAGCATGAATCTGCCGTGTAAATGACGTCATTCAATATAGACAATTCCAC
GTTGTTGCATAGAAACCAAACCTTCTTCATGAGCAGCCTGCTTCCACCAT
CAGAACCGCCTNCCACGTTGTTGCATAGGAACCAAACCTTCTTCATGAGC
AGCCTGCTTCCACCATCAGAACCGCCTACCGCCCTCAACCATTCATTATC
CTTCGTCAATGTGGTCAGCCTTTTGATGCTGGGAACGTTGGTGATTTGCA
TCATCGGAGGGAACGTTCTTGTCATCAGTGCTTTCATGACCAACGGGAGG
AAGATCCAGACTATCACAAACTATTTTGTCGTCTCACTGGCGGTCTCTGA
TATTTTGGTGGGAGTATTCTCCGTACCTTTTTGGATGCTGGTCGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004602XLOC_004602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008185-proteinTCONS_00008185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008185-exon-sc0000082-1575043694:537953..538066TCONS_00008185-exon-sc0000082-1575043694:537953..538066Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1575043694:535873..536261TCONS_00008185-exon-sc0000082-1575043694:535873..536261Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1575043694:534727..535651TCONS_00008185-exon-sc0000082-1575043694:534727..535651Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1510915933:537953..538066TCONS_00008185-exon-sc0000082-1510915933:537953..538066Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1510915933:535873..536261TCONS_00008185-exon-sc0000082-1510915933:535873..536261Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1510915933:534727..535651TCONS_00008185-exon-sc0000082-1510915933:534727..535651Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1491911889:537953..538066TCONS_00008185-exon-sc0000082-1491911889:537953..538066Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1491911889:535873..536261TCONS_00008185-exon-sc0000082-1491911889:535873..536261Clytia hemisphaericaexon
TCONS_00008185-exon-sc0000082-1491911889:534727..535651TCONS_00008185-exon-sc0000082-1491911889:534727..535651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:534727..538066 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.585596	0.158869	0.00458335	0	3.97871e-09	0	1.62761	8.55339e-08	0	0	0	0	0	0.356559	3.30191e-09	0.805612	0	0.866269	0	0.951704	0.833426	0	0	0	0	0.263604	0.252411	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00008185 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 5.095e-26
Identity = 95/325 (29.23%), Postives = 152/325 (46.77%), Query Frame = 2 
Query:  302 SFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITNYFVVSLAVSDILVGVFSVPF---------WMLVEINHEQSSSLPHIVFLALDVMLGVASIVHLTVISLERLFAV-IRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSFVKTYYGW----------------------------KAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHI------------SEQK----------KLKQEMRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKFLHYSNSMMNPLVYAYRNSDYRQAF 1096
            S   VV L  L T+++  I GN+LV+ A   + +  +  TNYF+VSLA +D+LV V  +PF         W+  E+          +V  +LDV+L  ASI HL  ISL+R +A+  +P  +RN  + T L RIA+  + G  ++ + +SF+    GW                            K Y I   V+ F +P L++V +Y  IY  A++H             SE +          +++ E + A  + I++  F +CW PFF+ NI+      P   + +  +      +L Y NS +NP +YA+ N  +R+AF
Sbjct:   16 SVEKVVLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWIYGEVF--------CLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRN--KMTPL-RIALM-LGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAPFFVTNIV-----DPFIDYTVPGQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAF 323
The following BLAST results are available for this feature:
BLAST of TCONS_00008185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT4R5.095e-2629.235-hydroxytryptamine receptor 4 OS=Homo sapiens GN=... [more]
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