TCONS_00008185-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008185-protein
Unique Name	TCONS_00008185-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	374

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008185-protein ID=TCONS_00008185-protein|Name=TCONS_00008185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MTSFNIDNSTLLHRNQTFFMSSLLPPSEPPXTLLHRNQTFFMSSLLPPSE
PPTALNHSLSFVNVVSLLMLGTLVICIIGGNVLVISAFMTNGRKIQTITN
YFVVSLAVSDILVGVFSVPFWMLVEINHEQSSSLPHIVFLALDVMLGVAS
IVHLTVISLERLFAVIRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSF
VKTYYGWKAYNIYIVVIGFVVPALIIVCSYVAIYRVAQQHISEQKKLKQE
MRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKF
LHYSNSMMNPLVYAYRNSDYRQAFKNLLLSLLKRQALRKRSASGLSSGTG
RSDLDDFMDSVQNLNQMSKHESAV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004602	XLOC_004602	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008185	TCONS_00008185	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 211..234 score: 26.52 coord: 99..120 score: 37.0 coord: 143..165 score: 31.06 coord: 253..277 score: 30.55 coord: 65..89 score: 23.37 coord: 295..321 score: 28.98
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 76..328 e-value: 2.1E-6 score: -14.9
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 80..313 e-value: 8.7E-42 score: 143.1
None	No IPR available	GENE3D	1.20.1070.10		coord: 36..372 e-value: 2.4E-67 score: 226.6
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 29..344
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 80..313 score: 33.23

Blast

[Close]

BLAST of TCONS_00008185-protein vs. Swiss-Prot (Human)
Match: HRH2 (Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 6.344e-28
Identity = 96/318 (30.19%), Postives = 165/318 (51.89%), Query Frame = 0

Query:   68 LMLGTLVICIIGGNVLVISAFMTNGRKIQTITNYFVVSLAVSDILVGVFSVPFWMLVEINHEQS-SSLPHIVFLALDVMLGVASIVHLTVISLERLFAVIRPATHRNLSRQTHLVRIAVFAVWGFAIVNSALSFVKTYYGWKAYN------------------IYIVVIG---FVVPALIIVCSYVAIYRVAQQ------HISEQKKLK-QEMRLAGMIAIVIILFIVCWFPFFLINILYEYCYPPECSHVIIEKSIPFVKFLHYSNSMMNPLVYAYRNSDYRQAFKNLLLSLLKRQALRKRS----ASGLSSGTGRS 352
            ++L  L++  + GNV+V  A   N R+++ +TN F+VSLA++D+L+G+  +PF  + +++ + S   +   ++ +LDVML  ASI++L +ISL+R  AV+ P  +  L      V I++  +W   +++  LSF+  + GW + N                  +Y +V G   F +P LI+  +Y  I++VA+       HIS  K    +E +    +A V+  FI+CWFP+F    +Y      +  + ++E     V +L Y+NS +NP++YA  N D+R  ++ L    L  +   K S    AS LS    R 
Sbjct:   23 VVLAVLILITVAGNVVVCLAVGLN-RRLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVR-VAISLVLIW---VISITLSFLSIHLGWNSRNETSKGNHTTSKCKVQVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATIREHKATVTLAAVMGAFIICWFPYF-TAFVYRGLRGDDAINEVLE---AIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSRE 331

The following BLAST results are available for this feature:

BLAST of TCONS_00008185-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008185-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HRH2	6.344e-28	30.19	Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2...	[more]

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TCONS_00008185-protein (polypeptide) - C. hemisphaerica