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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008171 ID=TCONS_00008171|Name=TCONS_00008171|organism=Clytia hemisphaerica|type=transcript|length=4656bpRun BLAST on NCBI protein sequence of TCONS_00008171-protein >TCONS_00008171-protein ID=TCONS_00008171-protein|Name=TCONS_00008171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1039bp MRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGARun BLAST on NCBI transcript from alignment at sc0000082:368467..421012- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008171 ID=TCONS_00008171|Name=TCONS_00008171|organism=Clytia hemisphaerica|type=transcript|length=52546bp|location=Sequence derived from alignment at sc0000082:368467..421012- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:368467..421012- >TCONS_00008171 ID=TCONS_00008171|Name=TCONS_00008171|organism=Clytia hemisphaerica|type=CDS|length=56160bp|location=Sequence derived from alignment at sc0000082:368467..421012- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008171 vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 236.884 bits (603), Expect = 2.450e-63 Identity = 180/650 (27.69%), Postives = 305/650 (46.92%), Query Frame = 3
Query: 1470 LEQKANVNAKDYYGSTPLHFASMRGNVTAARHLLNVKTIDIEAKDRTQMTALHSAASNGSYEVCDLLLQHGADIRCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLHIACTSGEEGIVQTLVESEAD----IEAKNVLQETPLHRAALFNRINIVRYLLDRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINI---IRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAA-VDARNAMLWTPLDCAASRGWTWCAENLLDAD-SLIDPTDKAKTTPLHLASKEGHVDMIKLLISRKAVITRKDHLGRNCLDWAIENNQRDAALAILDCEQWKNALR--NCTAEGNKVTTPMRKLIKKLPDVAEKVFDKCIKGNGLPVEHPQYEISCSYEFLEDSFTEWGPSVFDFKALEIKKQHVVHNANSNVTMDTQKKSYCHMIGRKLHLPGYVKKQTERKRNHPLKFMVQNERTKLLCHPLVTYLLRHKWRSLG 3386
L + AN N +++ PLH A N + LL +TID+ + TA+ A + + E +LL+ GA ++ P+H A+ G + +E++ GE+ G L M+ + T LHLAV+NG +++K+C+ GA ++ V+ T +H A T G IV+ ++ S + + + ET LHRA+LF+ + YL+ A+I+ D + ++PL+ A + V LLL +GA + +KD + L++ ++ + + N+ ++ Q L+ + D + TPLH A +G +V LL I +K+ +PLH A+ YGR + LL++ ++N+ D TPLHLAA GH+ V+ +LL+KGA + N WT L A+ G+T + +LD + D D+ T LH A++EGH + LL+S A I + L A+ N +++ L I+ ++W L+ + + GNK P+ ++I+ LP+ + + D C+ H + SC ++E ++FK L+ + +V + L MVQN R +LL HP+ L KW + G
Sbjct: 118 LSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGK--ATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQP-YGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLSDHNG--WTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQA-SFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKC--PITEMIEYLPECMKVLLDFCML-------HSTEDKSCRDYYIE----------YNFKYLQCPLEFTKKTPTQDVIYEPLT---------------------------ALNAMVQNNRIELLNHPVCKEYLLMKWLAYG 715 HSP 2 Score: 144.05 bits (362), Expect = 2.222e-34 Identity = 89/245 (36.33%), Postives = 141/245 (57.55%), Query Frame = 3
Query: 3681 IVLFLA-VFSLIIEFAKLISQLHQYFLP-HCVVEFTSYILSILYVIESFAYNGAPIEIMSRCTDWQRSLGAITVWLSWINLVLFMRKFPKLGIYVVMFTDILKTFAQFFTVFALFVISFGLGFHMMLYEQRPRAFSTPLRAILKTTMGMLGEFEYDTVFNDDY--NPLP---TAWVIYVAYLIVCCIIVMNLLVGLAVDDIKGVQEQAALKRLAMQVDLTLDVEKALPLSIQNKLIKTEELIYPN 4394
I++FL+ +F E ++ Q YF+ V+E+ Y I++V+ F A ++ WQ GAI V+ W+N +L++++F GI++VM ILKT + VF +++FGL F+++L Q P FS+PL +I++T MLG+ Y F + Y N L ++ V++ I I++MNLL+GLAV DI VQ+ A+LKR+AMQV+L +EK LPL K+ + ++YPN
Sbjct: 775 ILVFLSSIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFVEIPAHLQ-------WQ--CGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNLQDP--FSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPN 1008 HSP 3 Score: 126.716 bits (317), Expect = 4.297e-29 Identity = 127/488 (26.02%), Postives = 199/488 (40.78%), Query Frame = 3
Query: 1692 RCRDEEDMTPLHFASMEGHVDIVELLFDVGEKQGGYTMLAKMIMDQDRDDQTALHLAVENGHCDIVKLCISKGANVNFVKTNMNTPLH----------------------------------IACTSGEEGIVQTLVESEADIEAKNVLQETPLHRAALFNRINIVRYLL--------DRDAEIDCRDKDKKTPLMNAVRKDNVETVKLLLQRGADIKVKDAADKTSLYVAAEEDCWDVINI-IRKIPQSSSLLEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNI-----------------------------------VNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLLDADS---LIDPTDKAKTTPLHLASKEGHVDMIKLLISRKAVITRKDHLGRNCLDWAIENNQRDAALAILD 2912
RC D+ D LH+A+ EG ++++E + + +L +M D T LH AVE + VK +S+GAN N NM PLH IACT+ +Q L++ A N P+H+AA + +L R I+ + K TPL AV+ ++E +K+ L GA I + T+++ AA + +++ + I S ++ D T LH AS H + + L+S+G+ I+ + + +PL LA+ IV LLL + +I V DED+ TPLH A +G ++ LL ++ +++ +PL AAS G + LL S L++ D TPLHLA+K GH +++LL+ +K + DH G L A ILD
Sbjct: 58 RC-DDMDTFFLHYAAAEGQIELMEKI----TRDSSLEVLHEM----DDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLL-KKGALFLSDHNGWTALHHASMGGYTQTMKVILD 535 HSP 4 Score: 89.7373 bits (221), Expect = 1.060e-17 Identity = 72/215 (33.49%), Postives = 105/215 (48.84%), Query Frame = 3
Query: 2214 IKVKDAADKTSLYVAAEEDCWDVINIIRKIPQSSSL--LEEFDKNENTPLHIASTKGHIKAVEVLLSMGSLIDAKNDQNLTPLHLASKYGRSRIVRLLLEESGTHNIVNDEDDASNTPLHLAALEGHENVLSILLEKGAAVDARNAMLWTPLDCAASRGWTWCAENLL--------DADSLIDPTDKAKTTPLHLASKEGHVDMIKLLISRKAVI 2828
+K D D L+ AA E I ++ KI + SSL L E D NTPLH A K I++V+ LLS G+ + +N + PLH+A + + ++++LLE VN E + NT + +A + L ILL+KGA N P+ AA G C E +L I+ + K TPLHLA + G ++MIK+ + A I
Sbjct: 56 LKRCDDMDTFFLHYAAAEG---QIELMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTID--VNLEGENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQI 265 The following BLAST results are available for this feature:
BLAST of TCONS_00008171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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