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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008161 ID=TCONS_00008161|Name=TCONS_00008161|organism=Clytia hemisphaerica|type=transcript|length=580bp
tgaaaacatAGTTCTCTGCTAAGAAATTAAGGTAATGAACCTGTGAGATA
ATTTTGATCGATTCACTGAATCCTCAACTTCTATCAGTAGAAATCTGAat
cataaaatattgaaaaaaaatcaatgatgaAGTACCACTTTgcagtttgt
ttgtttttgtttatggtGAATTGCATCATGGGTAGTAAACACCCAAACAT
TATTATGATTGTGGCTGATGATCTTGGTTTCAACGATGTCAGCTTCCATG
GTTGTCCACAGATACCAACACCCAATCTCGACCTCCTGGCAAACAAAGGA
ATCATACTCAATAATTACTACGTTCTCCCAAACTGTTCACCCACCCGTAG
TGCTTTGCTGACCGGACGGTACCCTATCAATACCGGTATGTGTTCAGTTt
gcattttaacttttattttcaaatgaatACTTTCtaattcattttgaaaa
tgttgcttTCGTTCTTTGTCAGGACCTGGATCTCATACGATGCCAGTGAA
GTGGCACTGAATGGGTTTAGAAGAAGATTTATTTTAACACACAAGTGTTG
TATACAAAACGCATAAATTTTGAGTGGAAA Run BLAST on NCBI protein sequence of TCONS_00008161-protein >TCONS_00008161-protein ID=TCONS_00008161-protein|Name=TCONS_00008161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MMKYHFAVCLFLFMVNCIMGSKHPNIIMIVADDLGFNDVSFHGCPQIPTP
NLDLLANKGIILNNYYVLPNCSPTRSALLTGRYPINTGMCSVCILTFIFK Run BLAST on NCBI transcript from alignment at sc0000082:280983..283412- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008161 ID=TCONS_00008161|Name=TCONS_00008161|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at sc0000082:280983..283412- (Clytia hemisphaerica)
TGAAAACATAGTTCTCTGCTAAGAAATTAAGGTAATGAACCTGTGAGATA
ATTTTGATCGATTCACTGAATCCTCAACTTCTATCAGTAGAAATCTGAAT
CATAAAATATTGAAAAAAAATCAATGATGAAGTACCACTTTGCAGTTTGT
TTGTTTTTGTTTATGGTGAATTGCATCATGGGTAGTAAACACCCAAACAT
TATTATGATTGTGGCTGATGATCTTGTGAGTGTTCTCTTCTGATCTTGCT
TTGTTAAGAAATTTACCCAATAGAGGCTGCATAGTGTCCTCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATTTTCCCCCCCCCCCCCCTTTATAAAGGGGG
GGGGGGATTCTGATTTTGGCCCTATTTTTAAAGTATGGGGGAAAATGAAA
AATTTGAAATTTGCTTGGGGAAAATAAAGAGGGGGGAAAACCATAAATTT
AGGAAATTTTGACTGGGGGAACTTCACTGATCTCAAGGTTATCTTATTGC
AAAACCCGTTTAAGCAATAAAATCAACCAACCTTTTTAAATAAACCAACT
TTTCAATACAATTTCATTTTCCCAGCACTTTCAAGGCTATATTTTCAAGC
TTTCCCAAAATTTCAAATTTGATTTAAGGCANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGGGAAAAATTTTGAAATATGGTGGGGGAAAGAAAAGAGGGGGGAAT
GGAGAAAAAATTGGATTTTTAGTGGGGGGAACCAACCCAGGAGGACACTA
TGGGCTGAAATACTCCGGGTGGGAAATTTCTCAAATGGAGGCCAGGATGT
TAAAGGGATAACCAAGCTATTTTTCTTGTTTATATATATGTTGTAGAACG
ATAGTGTATGCGAGCTTTCAGAATTGTACCCTCTCTGTGACACATCTGAA
AATGAAAATAACTGGAAGCGGTTGAAATAGGGATGTTCTGGAGGATCCAA
AACTTAATAAAGTGATATGTTCTTGAAGCCATAACTTCGTCTTTGTAGTT
TATTTATAAAAGCTTGTAATCTGATGGACGGTAAATCCTTTAAGCTATCT
TAAGCCTCTAATGACGTTTATATTATGTGGAATTAAGACCACTTAAACCA
TTTTAAGTTCCAATAACATTTGGAAAACATGGAGCTAAAACAAATATAAA
TCTAATCTGGTGTTTTAGTGTGAATCTCGTTTAATCGTATAGACCACCCA
TTTGACAAACGTACATGACATTTCGCTACAAAAAGTATATTTTTAAATGC
TTCCATTTAAAAGTAATACGAATACGATAAATTGAAAACAATTGCAATAT
GACCTTAGAAAGGATAAACAAATTTAAAGACCTCAAATGTTTATAAATTT
CAATGAGATTGCGCAATCAAATGTTATCGTGTTCTCTGTTTCCCTCTAAT
ACGGAAACTCAACTTGAGTCAATGTTAGTACTAAGAACCCAATTAAGTTT
GGAACGTAGCGTGCTTCCAATAACCGAATCTTACTAACAACAATGTTTGG
AATATCAAACAGTTAGCTGCACTGGTGATGGATAACATTGCCAACATAAC
GCATTTCTATTACTTTTGATTTATCTCGGTTCATTCTTTTTTCAATATTC
GATCATGTTCGATCTTTCTTTCCAGGGTTTCAACGATGTCAGCTTCCATG
GTTGTCCACAGATACCAACACCCAATCTCGACCTCCTGGCAAACAAAGGA
ATCATACTCAATAATTACTACGTTCTCCCAAACTGTTCACCCACCCGTAG
TGCTTTGCTGACCGGACGGTACCCTATCAATACCGGTATGTGTTCAGTTT
GCATTTTAACTTTTATTTTCAAATGAATACTTTCTAATTCATTTTGAAAA
TGTTGCTTTCGTTCTTTGTCAGGACCTGGATCTCATACGATGCCAGTGAA
GTGGCACTGAATGGGTTTAGAAGAAGATTTATTTTAACACACAAGTGTTG
TATACAAAACGCATAAATTTTGAGTGGAAA Coding sequence (CDS) from alignment at sc0000082:280983..283412- >TCONS_00008161 ID=TCONS_00008161|Name=TCONS_00008161|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000082:280983..283412- (Clytia hemisphaerica)
GGTTTCAACGATGTCAGCTTCCATGGTTGTCCACAGATACCAACACCCAA
TCTCGACCTCCTGGCAAACAAAGGAATCATACTCAATAATTACTACGTTC
TCCCAAACTGTTCACCCACCCGTAGTGCTTTGCTGACCGGACGGTACCCT
ATCAATACCGGTATGTGTTCAGTTTGCATTTTAACTTTTATTTTCAAATG
AATGATGAAGTACCACTTTGCAGTTTGTTTGTTTTTGTTTATGGTGAATT
GCATCATGGGTAGTAAACACCCAAACATTATTATGATTGTGGCTGATGAT
CTTGGTTTCAACGATGTCAGCTTCCATGGTTGTCCACAGATACCAACACC
CAATCTCGACCTCCTGGCAAACAAAGGAATCATACTCAATAATTACTACG
TTCTCCCAAACTGTTCACCCACCCGTAGTGCTTTGCTGACCGGACGGTAC
CCTATCAATACCGGTATGTGTTCAGTTTGCATTTTAACTTTTATTTTCAA
ATGAATGATGAAGTACCACTTTGCAGTTTGTTTGTTTTTGTTTATGGTGA
ATTGCATCATGGGTAGTAAACACCCAAACATTATTATGATTGTGGCTGAT
GATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008161-exon-sc0000082-1575043694:283188..283412 | TCONS_00008161-exon-sc0000082-1575043694:283188..283412 | Clytia hemisphaerica | exon |
| TCONS_00008161-exon-sc0000082-1575043694:280983..281337 | TCONS_00008161-exon-sc0000082-1575043694:280983..281337 | Clytia hemisphaerica | exon |
| TCONS_00008161-exon-sc0000082-1510915933:283188..283412 | TCONS_00008161-exon-sc0000082-1510915933:283188..283412 | Clytia hemisphaerica | exon |
| TCONS_00008161-exon-sc0000082-1510915933:280983..281337 | TCONS_00008161-exon-sc0000082-1510915933:280983..281337 | Clytia hemisphaerica | exon |
| TCONS_00008161-exon-sc0000082-1491911889:283188..283412 | TCONS_00008161-exon-sc0000082-1491911889:283188..283412 | Clytia hemisphaerica | exon |
| TCONS_00008161-exon-sc0000082-1491911889:280983..281337 | TCONS_00008161-exon-sc0000082-1491911889:280983..281337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000082 | supercontig | sc0000082:280983..283412 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0008484 | sulfuric ester hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008152 | metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008152 |
metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0008484 |
sulfuric ester hydrolase activity |
Blast
BLAST of TCONS_00008161 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.505e-19 Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 184 SKHPNIIMIVADDLGFNDVSFHGCPQIPTPNLDLLANKGIILNNYYVLPNCSPTRSALLTGRYPINTGMCSVCIL 408
S+ P+++ ++ADDLG+NDV FHG +I TP+LD LA G++L+NYY P C+P+RS LLTGRY I TG+ I
Sbjct: 42 SRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIW 115
The following BLAST results are available for this feature:
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