TCONS_00007868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007868
Unique NameTCONS_00007868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007868 ID=TCONS_00007868|Name=TCONS_00007868|organism=Clytia hemisphaerica|type=transcript|length=982bp
GTTCCTTTGGCTTTTctactttttcaacttttttcttttctgcttGTTTA
AAAAGATCCTCTTCGATCAAATAATCTGGCTCTACACCATCCACCTCGAT
GACTTTATTCCAAACACTGCTACTGTTTCGTTTCAAAACGTGAGTTGGAA
TCTTATTCCATTGAAGCTTCTTCATTTTACTACTTGGTGTGCGTGTTGGT
TTGATCTTAGAAGTTGGTCCGTCCGGTACAGTTTGCGCAAAGCctggtgg
aggtggtggtggTACTCCTCCAAACATAGGTGGTGGTGGAGGAGCTCCCA
TTCCAggtggtggtggaggtggaGGTACCCCTCCCATACCTGGCGGTGGC
GGTGGAGGGGGTACTCCACCCATACCTGGAGGTGGAGGTGGTGGCGGAGG
AACTCCCATGCCAGGCGGAGGAGGTGGTGGAGGTACTCCTGCCATAcctg
gaggtggtggaggtggaggTGGCGGTGGGGGTCCACCCATTCCAGGTGGA
GGTGGTGGGGGCATCATACCTCCTGGTGGTGGGGGAGGTGGAGGAGGTGG
TGGTGGTGCTCCCATACCTGGTGGAGGAGGGGGAGGAGGAggcggtggtg
gtggtggagCAGCAACCGGTGCAGGAGAAGCGCCTGGGTTGGCGATACCA
GGTAATGCAACTGCACCACTGGGTAATTTCTTTGGTACTGCATCAGTCTG
TGTCTCTTTGACCATAGTGACtggctttttcttttcttttaataagTCCG
TTTGTATAGCTACTGTTTGTGTACGCTCAAAAGCATTCGATATTTTCTTT
AGTTCCTGTTCTGCTCGTCTTTTTCCAGCCAGCTCTTGCTTTTCATTGGT
GATATAAACAGCTCTAACGACGATATCTTCGATGATTTCCCACACACGAT
CACTGTACTCACTTTCAACGTCGATCATCAACAAACTTTGTAAAATACGA
AGAAAATTGTTGGCGATTGGCTTGTTGGCAat
Run BLAST on NCBI

transcript from alignment at sc0000080:678663..679791+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007868 ID=TCONS_00007868|Name=TCONS_00007868|organism=Clytia hemisphaerica|type=transcript|length=1129bp|location=Sequence derived from alignment at sc0000080:678663..679791+ (Clytia hemisphaerica)
GTTCCTTTGGCTTTTctactttttcaacttttttcttttctgcttGTTTA AAAAGATCCTCTTCGATCAAATAATCTGGCTCTACACCATCCACCTCGAT GACTTTATTCCAAACACTGCTACTGTTTCGTTTCAAAACGTGAGTTGGAA TCTTATTCCATTGAAGCTTCTTCATTTTACTACTTGGTGTGCGTGTTGGT TTGATCTTAGAAGTTGGTCCGTCCGGTACAGTTTGCGCAAAGCctggtgg aggtggtggtggTACTCCTCCAAACATAGGTGGTGGTGGAGGAGCTCCCA TTCCAggtggtggtggaggtggaGGTACCCCTCCCATACCTGGCGGTGGC GGTGGAGGGGGTACTCCACCCATACCTGGAGGTGGAGGTGGTGGCGGAGG AACTCCCATGCCAGGCGGAGGAGGTGGTGGAGGTACTCCTGCCATAcctg gaggtggtggaggtggaggTGGCGGTGGGGGTCCACCCATTCCAGGTGGA GGTGGTGGCGGAGGAACTCCCATGCCAGGCGGAGGGGGGGGTGGAGGTAC TCCTGCCATAcctggaggtggtggaggtggaggTGGCGGTGGGGGTCCAC CCATTCCAGGTGGAGGTGGTGGCGGAGGAACTCCCATGCCAGGTGGAGGT GGTGGGGGCATCATACCTCCTGGTGGTGGGGGAGGTGGAGGAGGTGGTGG TGGTGCTCCCATACCTGGTGGAGGAGGGGGAGGAGGAggcggtggtggtg gtggagCAGCAACCGGTGCAGGAGAAGCGCCTGGGTTGGCGATACCAGGT AATGCAACTGCACCACTGGGTAATTTCTTTGGTACTGCATCAGTCTGTGT CTCTTTGACCATAGTGACtggctttttcttttcttttaataagTCCGTTT GTATAGCTACTGTTTGTGTACGCTCAAAAGCATTCGATATTTTCTTTAGT TCCTGTTCTGCTCGTCTTTTTCCAGCCAGCTCTTGCTTTTCATTGGTGAT ATAAACAGCTCTAACGACGATATCTTCGATGATTTCCCACACACGATCAC TGTACTCACTTTCAACGTCGATCATCAACAAACTTTGTAAAATACGAAGA AAATTGTTGGCGATTGGCTTGTTGGCAat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004457XLOC_004457Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007868-exon-sc0000080-1491911889:678663..679157TCONS_00007868-exon-sc0000080-1491911889:678663..679157Clytia hemisphaericaexon
TCONS_00007868-exon-sc0000080-1510915933:678663..679157TCONS_00007868-exon-sc0000080-1510915933:678663..679157Clytia hemisphaericaexon
TCONS_00007868-exon-sc0000080-1575043694:678663..679157TCONS_00007868-exon-sc0000080-1575043694:678663..679157Clytia hemisphaericaexon
TCONS_00007868-exon-sc0000080-1491911889:679305..679791TCONS_00007868-exon-sc0000080-1491911889:679305..679791Clytia hemisphaericaexon
TCONS_00007868-exon-sc0000080-1510915933:679305..679791TCONS_00007868-exon-sc0000080-1510915933:679305..679791Clytia hemisphaericaexon
TCONS_00007868-exon-sc0000080-1575043694:679305..679791TCONS_00007868-exon-sc0000080-1575043694:679305..679791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:678663..679791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81734 2.40849 2.03977 2.3294 1.47638 1.22849 1.21928 1.29705 0.612515 0.794702 1.65634 0.966099 2.14972 2.30701 1.43001 2.09886 1.52139 0.998004 1.64323 1.96416 1.07414 0.373382 1.99631 1.56836 1.37931 0.862908 3.58653 2.99836 1.78086 1.63727
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015425FH2_Formin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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