TCONS_00007593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007593
Unique NameTCONS_00007593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007593 ID=TCONS_00007593|Name=TCONS_00007593|organism=Clytia hemisphaerica|type=transcript|length=1532bp
TTCAgacaacaaaaaataaataaaatgaggGAGTTAGAATGTGAACTTGC
ATTTCTTAGTAAATGTGATGGTTCAGCAGCATTCCAACATGgtACAACCA
AAACACTATGTGCTGTTTACGGACCAGTGGAGGTCAAATTAAACCAGGAG
AAAGTTGATCGAGCAACACTGGACTGTATTATTAAACCAAAAGTTGGTCT
AGGCAGTGTGAAGGAGAAGTCATTAGAAGCCATAGTCTCGAAAACATGTG
AAGAAGTTGCATTAACCACGCTCCACCCTCGATCTGCCATGCAAATTGTT
GTACAAACATTACAAGACTCTGGATCGttGCTGGCATGTATGTTGAATGC
AAGTTGTATGGCTATGGTGCATGCTGGTTTGCCCATGAAAAGTCTGATGG
TTGCAGTAGCTTGTTGTGTTTGCAATGATCAGATCATCATTGATCCTACC
TTGGAAGAGGAAGAGAACAGTGTATGTGGGATGACGTTTGCTTTTGGaac
aaagaattttgaaatgatTGCTTCACATACGTACGGCTCTTTCACTGTGG
ATCAGtaCATGACATGCTTGGAAAATTGTCGACGTGTTGGTAAACAAATA
GCTTCGTTTCAGAGAGATTCGATAACCCGTTTCCTTAGCAAGGAAACAAA
CGAGGAAGAGACGGAGACCGAGGAAGAATGAATGAAAGGGATGAAAGATT
CAAATCATGGGCGAATGAATTTTTGAAGGACGGAGAAAATCTATGAATAA
CAAGAGAACTACTAGAGTACGCTGATGAGTAAATGCTAAAGTGGAAATAT
AATCGAAAAATGGAATGGAATGGAAGTTAGACAAAATTTGAATACTGAAT
ACCAATATCATACCTAATGATAATCGAGCTAATGCGAATCATCGAATGAA
AATCGGGAGTAAATGGGACAACCTTGATAATCTAAAACCGTCAAAAAAAA
AAGGACTGAACGAGCTTTTAGATGTCTATTTTGGGATGAATACTCTATTT
CGATTAATTATTATCGAAAGCAAAATTTGTTCATGAAGTATTCCCCAAAA
GATAATTATAGATATTTTAACTATATCAGGTAATGGTGGCTCAAAATAac
acattgggctcttccagaaaaagttCGTTCccggggggtggaggatatat
gaatttttcaatgatctaccccttaacattttgacttttcaccccctgga
caagcgttttacccctggacatggcaaattcaccccatggacatggtagt
ttttcaggatttttcgatacccctggacaatatatcttccaccccctatt
aagggtttttttctggaagagcccatttatAGGGATGATCGACACAAAAA
CCCTCACATTCTTtccatttttgtttgatttgtcaGAATCATAATAAATA
CATCAAACCacttatttttccaaaattcttcCTGAAAAGGTTTCCCCATT
TTCCCGAGATTTTTTGGAATGAATTTGGAAAGTTTCAAACATACATTTTA
ACAAAcattcattttaattttactgTACTGAG
Run BLAST on NCBI

protein sequence of TCONS_00007593-protein

>TCONS_00007593-protein ID=TCONS_00007593-protein|Name=TCONS_00007593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
FRQQKINKMRELECELAFLSKCDGSAAFQHGTTKTLCAVYGPVEVKLNQE
KVDRATLDCIIKPKVGLGSVKEKSLEAIVSKTCEEVALTTLHPRSAMQIV
VQTLQDSGSLLACMLNASCMAMVHAGLPMKSLMVAVACCVCNDQIIIDPT
LEEEENSVCGMTFAFGTKNFEMIASHTYGSFTVDQYMTCLENCRRVGKQI
ASFQRDSITRFLSKETNEEETETEEE
Run BLAST on NCBI

transcript from alignment at sc0000078:484420..494714+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007593 ID=TCONS_00007593|Name=TCONS_00007593|organism=Clytia hemisphaerica|type=transcript|length=10295bp|location=Sequence derived from alignment at sc0000078:484420..494714+ (Clytia hemisphaerica)
TTCAgacaacaaaaaataaataaaatgaggGAGTTAGAATGTGAACTTGC
ATTTCTTAGTAAATGTGATGGTTCAGCAGCATTCCAACATGGTAAGACTA
CATTTTATCTGTGGTTAGCTAGTAAAAATGgtgttcaaaaaaaaaaaatc
tatttatgTTAGGGGGTCAATTTCAAAGGAATAATTGAATCTATtagaat
ttttaatttaaaataaattcagaGAGAAGTGAGTTGTCAACATGACATTA
GaccaaataataaaataatagtATGAATTACTAAATAAGTAAGATGACAG
TGTTATAAAAGGCAATAGTAGTCAAAAGGATTACAACGCCCCTACAAACA
ACTTTACACCTACTACTAGTATTACGAAACTTTTATCTTAATTATCTTAA
GCTCAAAGAGCTAGCAAGACAAAATAACAAGCTGTCACTAATTATATTTG
ATAATTTGCAGGAACCTTTGCAAAGTTGTCTTTCACAAATGTtataatga
ttgaaaattattttcaaaggtACAACCAAAACACTATGTGCTGTTTACGG
ACCAGTGGAGGTCAAATTAAACCAGGAGAAAGTTGATCGAGCAACACTGG
ACTGTATTATTAAACCAAAAGTTGGTCTAGGCAGtaattatatcattttt
tacaatttctttatgTTTCAAATCATATGCGTTGTCTTATTTGAAATATC
TAGACATTCAATTAAAAAGATTATCATCTCTTCAATCTCTTTACCTAAAA
ATGCTTGTGAATTTAGACATTTTTCATGTCTGGTTATCAGCCAAACACCA
GATTTCAAGAATTAtctgatataacatagtttccTTCCCTCTTTCTGCTA
GGGGAGGggttcaaaaaaaattccagaaaggggggggggcaaaaggAAAA
ATGGAAATCCAGGGGGATTTCAAAAAGGttcaacaaattttttctggggc
aagaacttttcaactttttaacagAAAGTCTTCTGTCACCTTTTTAGTTC
TTTTACATATGCATGTTTTTCTTCCTCAAATCACATGGTAGATGCTCTCT
TTCTTGGATAGTTAGCAATTTATTTGTTTCTCTTGTGGTGACATTTTAAA
AAGAACTACATTTTGTGTGCAATGCAAATGTCAGGTGCATTGATTGTCTG
GATCCAGGTCCGCAGGGTGGTGAAAAAAAGGCATGCAGGCGGccaggaaa
aagttttttctgctcCTTTTCATGAAAGTAAATTTAAACACAAANTTATG
TTAGGGGGAATTTCAAAGGAATAAATGAATCTATTAGAATTTTTATTTAG
AATAAATTCAGAGAGAAGTGAGTTGTCAACATGACATTAGaccaaataat
aaaataatagtATGAATTACTAAATAAGTAAGATGACAGTGTTATGAAAG
GCAATAGTAGTCAAAAGGGTTACAACGCCCCTACAAACAACTTTACACCT
ACTACTAGTGTTACGACACTTTTATCTTAATTATCTTAAGCTCAAAGAGC
TAGCAAGCTGTCACTAATTATATTTGATAATTTGCAGGAACCTTTGCAAA
GTTGTCTTTCACAAATGTtataatgattgaaaattattttcaaaggtACA
ACCAAAACACTATGTGCTGTTTACGGACCAGTGGAGGTCAAATTAAACCA
GGAGAAAGTTGATCGAGCAACACTGGACTGTATTATTAAACCAAAAGTTG
GTCTAGGCAGtaattatatcattttttacaatttctttatgTTTCAAATC
ATATGCGTTGTCTTATTTGAAATATCTAGACATTCAATTAAAAAGATTAT
CATCTCTTCAATCTCTTTACCTAAAAATGCTTGTGAATTTAGACATTTTT
CATGTCTGGTTATCAGCCAAACACCAGATTTCAAGAATTATCTGATACAA
CATAGTTTCCTTCCCTCTTTCTGCTAGGGGAGgggttcaaaaaaaaattc
cagaaagggggggggggcaaaatgaaaaatggaaatcCAGGGGGATTTCA
AAAAGGttcaacaaattttttctggggcaagaacttttcaactttttaac
agAAAGTCTTCTGTCACCTTTTTAGTTCTTTTACATATATGCATGTTTTT
CTTCCTCAAATCACATGGTAGATGCTCTCTTTCTTGGATAGTTAGCAATT
TATTTGTTTCTCTTGTGGTGACATTTTAAAAAGAACTACATTTTGTGTGC
AATGCAAATGTCAGGTGCATTGATTGTCTGGATCCAGGTCCGCAGGGTGG
TGAAAAAAAGGCATGCAGGCGGccaggaaaaagttttttctgctcCTTTT
CATGAAAGTAAATTTAAAcacaaattaaaataaaaagttttgagaaatCT
TCCGATCATCATATTGTAAACGCATAAagtcattttgcaaaaaacgtgta
ataggAAACTAAGCAAAAAAGAAATGAACAAATTGATAAAACTGCCGCTG
GGTGacaacaaaaaagattttcaccGGGCAGGAAAGATTCAAAACTGGCC
ATATAACGTCCACAGAAAAACgcttggaattttcactgaaCTGTCCTTCT
ATCTAGAAACTAGCTTAGAATAGTTGTGCATCATTTCTAGGaaagaataa
aatctaataaacAATCAAATTAATTTATGATTCAAGGTGTGAAGGAGAAG
TCATTAGAAGCCATAGTCTCGAAAACATGTGAAGAAGTTGCATTAACCAC
GCTCCACCCTCGATCTGCCATGCAAATTGTTGTACAAACATTACAAGACT
CTGGATCGGTAACTATGTTTCCaagtttattttgtttattttattttaat
cacTATTTACATTATTTTTCACTATTCCAGAAGTACCCTGGTACCCCCTG
TAGTTAGGACTCCTGCTTTATTTATCGAGCTTTGGAAAATACCACCCCCT
CAGTTTGATAGTTCCTAGCCCCTCTTCATTTAGTGGGTCTTGAAACTCTT
TATTTCTTAGctttcttattttcatattgAAAATGCCTCAATGTGTTATC
CCTTGATTAcctttttgtaatattttttgattagaagtaacatttttaaa
tttgaaattcgaTACGTTTACAGAACAACTTTTGtttagaatttttagat
ttaacctgtgattttttaaatttattcaaGAGTAAGATGGTATAAAAATC
TATCAAATCTATTTCTTAGCAACATCATaatgttcttctttttcagttGC
TGGCATGTATGTTGAATGCAAGTTGTATGGCTATGGTGCATGCTGGTTTG
CCCATGAAAAGTCTGATGGTTGCAGTAGCTTGTTGTGTTTGCAATGATCA
GATCATCATTGATCCTACCTTGGAAGAGGAAGAGgtgaaaattttatgtt
ttttcgtATTTGAATTTGCAAAAAGGAAAATGATTGATTTCTGAGAACTT
CTTGAACCTAAGCTCCTCAAATTGACTTCTTCTTTGAAAGAACATTGTag
cttgtttttaagatttcaaTTTCTTCAACTCCCTCCTGCATATGAGGTTA
AATGGCTCCTTGTGATTCATTTCAGAAAAATTCTCTGCTTTAGTCTTACT
CCGTTTTACAGAAGTATCACCCAATTTTGATACCTGTTCATGGTGAATAA
TGACATACATACTTCTATTTCCAGAACAGTGTATGTGGGATGACGTTTGC
TTTTGGaacaaagaattttgaaatgatTGCTTCACATACGTACGGCTCTT
TCACTGTGGATCAGGTAAATTAGGTTTCTCTTTATTAATTCTtcctaaat
ctaaaataaagaTACAGCCAGCTttttctctctaattcaatGTTCTATTA
TTAGATACGATccattatttgataatattgaaagctaCGGTCAACAAGAA
ATTAATGAAGGACGTTCTACTATTGGGAAAAGTTGAGGAGCTGAACGGGT
TAAGGATTCATTTTTGTGCGAGAATGGGCATGGCCGGCGTGACAATTTTT
GCAGTTTTCTCTTAACTAAAGAGTGTAAAAAGATGATATAGAGCGATACT
AGTATGAAAAGTTTTTATTGGATAGCGAAAGGGTAACACTATAAAAGATA
CCCCGATTATTTTAATTTGATACAGTTCAATGGAAAAGACTGATAAAAGG
TTATGCACGGACAGACGTTATATACCGCAGTTTTgcataaaataaaaatc
tacaGTCTTTTGTAATGTGACGTAGATTTATCactgaaatatttgacgtc
aaataaaaaatcacccATATGAAAgtttctgcaaaattttaaaaacttca
attGAGAGAAATCATTTCAGCGTAATGCCGAGTTGACTCTGATCCTGATT
ATTATCGTGAAAATTTTATATTGTATTTACAAAGTTAATTAGTGTAAAAA
TGCTGTCAACATTGAAAGCAAACCGATGTGGCAGACATGAGGAGAAGTGG
CTTAAAACAGTTGTGGTTTACGAAGCTGATCTGGAACGAacaagcaaaat
ttcaaaatcacgcAAGAAGCAAAAATACACTTCCTCCAAAAAAGACTCAC
GCAAAGAAATTGTGAGccgaaatcaaaatgaaaatagcaAGGGGAGAATA
ATTCAACTTCTTAACACGAAAGCAAGCTGTGGACAACCAACTTCATTGAT
CACCTTCACGGACAAGAATGGCGTGGAATTAACCGTTACTGCCCAGAAGT
TTAATCAGCTGAAAGAATGCGGTTTACTACCAGCGAACGCTGTTCCAACC
TTGCAAGATCCACCTACAAAAGCAACTTCACCTTTGAAAAGTCAAGCTAC
AATCCAACAGTTGATCACCTTCACGGATAAGAATGGCGTGGAATTAACCG
TCACTTCAAAGAAGTTCAATCAGCTGAAAGAGTGCGGTTTACTTCCACCA
AACGCCATTCCACCCACGCAAGATCGGCCTAACAAAGTGACTACTCCTTC
GAAAAGTCAAGCTACAAGCCAACAGTTAATCACCTTCACGGACAAGAATG
GCGTGGAATTAACCGTCACTCCAAAGAAGTTCAATCAGCTGAAGGAGTGC
GGTTTACTTCCATCCAACGCCATTCCACCATTGCAAGAACCGCCTACTAA
AGCGACTACACCTTCGAAAAGTCAAGCTACAAGCCAACAGTTAATCACCT
TCACGGACAAGAATGGCGTGGAATTAACCGTCACTTCAAAGAAGTTCAAC
CAGCTGAAAGAATGCGGTTTACTTCCACCAAACGCCATTCCACCCTCGCA
AGATCGGCCTAACAAAGTGACTACACCTTCGAAAAGTCAAGCTACAAGCC
AACAGTTGATCACCTTCACGGACAAGAATGGCGTGGAATTAACCGTCACT
TCAAAGAAGTTCAATCAGCTGAAGGAGTGCGGTTTACTTCCACCCAAGGC
CATTCCACCCTTGCAAGAACCGCCTACTAAAGCGACTACACCTTCGAAAA
GTCAAGCTACAAGCCAACAGTTAATCACCTTCACGGACAAGAATGGCGTG
GAATTAACCGTCACTTCAAAGAAGTTCAACCAGCTTAAAGAATGCGGTTT
ACTTCCACCAAACGCCATTCCACCCTTGCAAGATCAACCTAACAAAGTGA
CTACACCTTCGAAAAGTCAAGCTACAACCCAACAGTTGATCACCTTCACG
GATAAGAATGGCGTGGAATTAACCGTCACTTCAAAGAAGTTTTATCAATT
GAAAGCCAGCGGTTTGATTCCATCAAACGCCATTCCACCCTTGCGAGATC
TGTCAACCAGGGCCGCTCCACCTTCACAAAACGTGTCGAGCTCAGTCACC
GAAGAATACTTCGAGCTGAAGCAACACGAACAAAACAAAAGTGAAGACGC
AAAATCACTTCAAGCCCTCCTCGAACTAGCAAAAGGTGACATTTCAAAAG
AGCGTATCAACTTCTACAAAGAACTAATAAAGGAAGCTCAAGAAGCTCCT
TTACCAGATGACGATGGTCAATGGTAAAAGTTGACACgaacgaaaaataa
acaaaaaacatttaataaaaaccaaaaatctttaaaaatcctGTATTGTT
TTTACATAATGTAAATATAACTCCGTATATATAATCACGTTGTCAATCAT
CTTAATTTTCAAATCCTAAAAGTATTAATGTTTATTTATGGCATGCTATA
CAAAATTGATGCCAAAATGAGGTCTTTAGCACAAAAATcaataatatcat
tatggaAAATCTTGTATCTAACTCTGACATCTCAAAGTCTGTTAAACTAT
TGTTTTAactgaaatcatgaaattgacgCAAAGCAGATATCTTTTCCCGG
ATATTTCACGATTTGCAACCCACATCTTTACAGATTCTAGCCGACTTTAT
TAGTAGTTGTTGTCCAGGGAAGAGAAAATTATATACAATACAATCTGAAA
CCCAAAACTCGTATCGAgtattttcataacttatttgaAGTATCGGcgta
aaaatatttaataaaccTTTTTGTATCCTGTACTAtaaactttcaacttt
caatcCTTTCAACTTGTACATTTGAATTTCTGAATTAACGAAAGTAGCTC
CCTCGTCAaggaaagggggggggggtctatTAGAAAATAACCcaagaatt
tgaaaattgaatcttCGAATAGCCTTTTACTACAACATTATTGAATGTGC
TTATTTATTGTGTATTTACTATGTATAAGAATTAAAACTctttaataaaa
attataaactGAAGTTAAAGCTAGTGCAATATCTCAAGTCAAAGATTATT
CTTAATCACCACATCTTAGATGGGAGCATATTGTTCGAatggactttttc
aaaacatccaAAATCAACTGATTCCTTATTGCTATGGAAACAGGTACCAG
AGTGAAATTGAGGTTCATGAATAAATCTGCTACCATGACAACTGTCCTGT
TAGGTTCTTCCGGTGAGCCTCGTTTTAATGCCCGCACTAACCGAAATATT
TCCGGTATACTGCACACGATATATGAGGTGGACAGTAACATGACTGTATT
GATCATTGTTCGATTTGTTTTCCGATTCAAATGCCGAATCTTCTTGGAGC
TGATGGCTCTGGTGTTGTTGTTGATACTCAGATTGGGAACAGAATTCTCC
TCTATGGCTGATGGTATTTGAAAAGAGAAAGCTGTCCGTGAGTTGTAATA
ACCACCTGATATAGCGGTTGAAGATGTCGCCCCTGAGCCGGAGGTTGTAT
CTTTCGAAATGGCTGTTGCGGTTTTGCGTCGATGTCGAATGATGACTTTG
TAGATATAAACATTTGTTAAAAGGAGAGCGCTACTTGTTATTACCATGGC
AACAAAAGCTAAGGTACCAGTTACCAAGAAggcttctttgtttttattca
atgtcATGATAAGTGCTATACAGAACGAGAAACAGGGGAAAGCGAAAATA
GAAATCGAAATCCAGAACACTTTCCTATCCGTCAAAATGACAGTATAGCG
CAGAGGATGTCGTACGCTGACGTATCGGTCTAAATTGATCGCCGTGTATG
AGAAATTGCAAGCGATTAAAAATGAATCGTAAACGGTGTACGTGTAAATT
GAAATCTGATGTATGGATGCCGATTCAAGTAGATAGTCTATTTCGGTGAT
GAAACTGATCAGAGATATCAAGATTTGTGAGATGAACAAATTCTTCATTA
ATACTATTGGGATACGAGTGGACAGCTCGTGGCGGTAGATATATAGCGTG
ATTGCTAGGGCGCTGTTACATATGAAGGAGGTATGAATCAATACCAAACT
AATTATCCCAATTACTGACATGACTATATCCTCGGTCGATTTCCAATTGT
TAACCATGAAGGGGTCGTCTCCTGTCGGTTGATGGAGATGATCTTTTTTA
AGACAAGCCTTGAATTTGGCTGCCCTCTTCTTCGCCGAATAAATATAATA
ATCGTGAAACTATTTGCACTATATTGGAATTGTAGAATTCAACAATCTTG
AAGCCTCTCTGCTCTCAAGATCTCAACCACAGCATTACACCCAATTATCC
AAACGCAAGTGTGATTTAtgaattttctaaatatttttctttgttacaTT
GTAACTTCTTCCTGACTTAATATCAACCGTCTTTTCAGAAAGAAATGTCT
TGGGGTATTCTGTCAGTATTTAGCCTCAGCCtctaaagtttttttatttc
tccTTTTGACCGATTTGAAATCTCTGCAACACAGGATAGGTCGATATTGT
ATTGTTTACCTACACTTTGTGATGTTTTTGACACTTGCTCCTTTTCGAAA
TTCCTTTTGTTTTCCTTAAAATCCCCATCTTCCTTTCACACTCAAacatt
ttaacaagtttttccttttttgacaGTTGTATATTTGATCATGTGTATTT
GTTCCTTGActtttacaaaaacttttccatgttcCTTCTTTCAGTATTAA
ATATTTAGCTATGCAGTTTCTTTTTACTTCTCCTCTTTTGCTTAGACGAG
CCTTCTGCTATTCTCTTTTAAGTCAGCAAAAACCTCTTCTCGAGTTTTCT
CTCTTATTTCTTAGCGACACCATTCTGATTTTCAGACCTGAATTTTTATA
AGATGGTGAATGCTACGGCCTGCTTACTTCCTTAGCACTTGATGTTACAT
ACATACACCTGCCCCTTAGTTTACGTGATTaattaaaaaagtgaaacaaa
atgaatatatcaaattaataaatttcaattaaaatatcaatcaaatttAT
TAGATAGTTGTCCTAAATATTTTCttaatcaattttcatattttttcttt
tagtaCATGACATGCTTGGAAAATTGTCGACGTGTTGGTAAACAAATAGC
TTCGTTTCAGAGAGATTCGATAACCCGTTTCCTTAGCAAGGTAACATACA
TAACAATTACAacaaaccagctgcgctggaaggtcagcccaattACAACA
ACAGTCACGATATACATCTCAAATGACCACACCCAAACCTAAATTTGAAC
TAAATTTTGATCCCTAAACACTTATTTAGtgataaacaaaatgaaaataa
ctttcaatCCTATTACTACCAAGCTTTTTGGTCAGGTCAGGTTATGAcgt
tatcattttttttaattattgttTCCGCTGAGATATCTAGTGAATatcta
aaacctgtcaaaatgtGAGGTTAAATGGATAATTACAATATGTATATCCA
AAGTCATGCTAAATTTTAAGATTCTATAATTCTCAGATTCTATAATTCTc
agattttacagggttttagctggattttaacATTCCTCAATAAAAAAAAC
GTCATAAAATCTGATCTAGCTGGtatatgattaaaaaatttggtATTATA
TGTTGCCGAGAAGAATatattaaaagtaaaaaagttttcttttcacttac
taGATATTAACGAATTAGATATTGAAGCGTCAGGGTGGCTGAAAACATAC
CCcttaataaaaataattaagtGGTTCTTTTATCAATTGTTTATTTCTTC
CCCAGGAAACAAACGAGGAAGAGACGGAGACCGAGGAAGAATGAATGAAA
GGGATGAAAGATTCAAATCATGGGCGAATGAATTTTTGAAGGACGGAGAA
AATCTATGAATAACAAGAGAACTACTAGAGTACGCTGATGAGTAAATGCT
AAAGTGGAAATATAATCGAAAAATGGAATGGAATGGAAGTTAGACAAAAT
TTGAATACTGAATACCAATATCATACCTAATGATAATCGAGCTAATGCGA
ATCATCGAATGAAAATCGGGAGTAAATGGGACAACCTTGATAATCTAAAA
CCGTCAAAAAAAAAAGGACTGAACGAGCTTTTAGATGTCTATTTTGGGAT
GAATACTCTATTTCGATTAATTATTATCGAAAGCAAAATTTGTTCATGAA
GTATTCCCCAAAAGATAATTATAGATATTTTAACTATATCAGGTAATGGT
GGCTCAAAATAacacattgggctcttccagaaaaagttCGTTCccggggg
gtggaggatatatgaatttttcaatgatctaccccttaacattttgactt
ttcaccccctggacaagcgttttacccctggacatggcaaattcacccca
tggacatggtagtttttcaggatttttcgatacccctggacaatatatct
tccaccccctattaagggtttttttctggaagagcccatttatAGGGATG
ATCGACACAAAAACCCTCACATTCTTtccatttttgtttgatttgtcaGA
ATCATAATAAATACATCAAACCacttatttttccaaaattcttcCTGAAA
AGGTTTCCCCATTTTCCCGAGATTTTTTGGAATGAATTTGGAAAGTTTCA
AACATACATTTTAACAAAcattcattttaattttactgTACTGAG

Coding sequence (CDS) from alignment at sc0000078:484420..494714+

>TCONS_00007593 ID=TCONS_00007593|Name=TCONS_00007593|organism=Clytia hemisphaerica|type=CDS|length=5448bp|location=Sequence derived from alignment at sc0000078:484420..494714+ (Clytia hemisphaerica)
TTCAgacaacaaaaaataaataaaatgaggGAGTTAGAATGTGAACTTGC
ATTTCTTAGTAAATGTGATGGTTCAGCAGCATTCCAACATGgtACAACCA
AAACACTATGTGCTGTTTACGGACCAGTGGAGGTCAAATTAAACCAGGAG
AAAGTTGATCGAGCAACACTGGACTGTATTATTAAACCAAAAGTTGGTCT
AGGCAGTGTGAAGGAGAAGTCATTAGAAGCCATAGTCTCGAAAACATGTG
AAGAAGTTGCATTAACCACGCTCCACCCTCGATCTGCCATGCAAATTGTT
GTACAAACATTACAAGACTCTGGATCGttGCTGGCATGTATGTTGAATGC
AAGTTGTATGGCTATGGTGCATGCTGGTTTGCCCATGAAAAGTCTGATGG
TTGCAGTAGCTTGTTGTGTTTGCAATGATCAGATCATCATTGATCCTACC
TTGGAAGAGGAAGAGAACAGTGTATGTGGGATGACGTTTGCTTTTGGaac
aaagaattttgaaatgatTGCTTCACATACGTACGGCTCTTTCACTGTGG
ATCAGtaCATGACATGCTTGGAAAATTGTCGACGTGTTGGTAAACAAATA
GCTTCGTTTCAGAGAGATTCGATAACCCGTTTCCTTAGCAAGGAAACAAA
CGAGGAAGAGACGGAGACCGAGGAAGAATGATTCAgacaacaaaaaataa
ataaaatgaggGAGTTAGAATGTGAACTTGCATTTCTTAGTAAATGTGAT
GGTTCAGCAGCATTCCAACATGgtACAACCAAAACACTATGTGCTGTTTA
CGGACCAGTGGAGGTCAAATTAAACCAGGAGAAAGTTGATCGAGCAACAC
TGGACTGTATTATTAAACCAAAAGTTGGTCTAGGCAGTGTGAAGGAGAAG
TCATTAGAAGCCATAGTCTCGAAAACATGTGAAGAAGTTGCATTAACCAC
GCTCCACCCTCGATCTGCCATGCAAATTGTTGTACAAACATTACAAGACT
CTGGATCGttGCTGGCATGTATGTTGAATGCAAGTTGTATGGCTATGGTG
CATGCTGGTTTGCCCATGAAAAGTCTGATGGTTGCAGTAGCTTGTTGTGT
TTGCAATGATCAGATCATCATTGATCCTACCTTGGAAGAGGAAGAGAACA
GTGTATGTGGGATGACGTTTGCTTTTGGaacaaagaattttgaaatgatT
GCTTCACATACGTACGGCTCTTTCACTGTGGATCAGtaCATGACATGCTT
GGAAAATTGTCGACGTGTTGGTAAACAAATAGCTTCGTTTCAGAGAGATT
CGATAACCCGTTTCCTTAGCAAGGAAACAAACGAGGAAGAGACGGAGACC
GAGGAAGAATGATTCAgacaacaaaaaataaataaaatgaggGAGTTAGA
ATGTGAACTTGCATTTCTTAGTAAATGTGATGGTTCAGCAGCATTCCAAC
ATGgtACAACCAAAACACTATGTGCTGTTTACGGACCAGTGGAGGTCAAA
TTAAACCAGGAGAAAGTTGATCGAGCAACACTGGACTGTATTATTAAACC
AAAAGTTGGTCTAGGCAGTGTGAAGGAGAAGTCATTAGAAGCCATAGTCT
CGAAAACATGTGAAGAAGTTGCATTAACCACGCTCCACCCTCGATCTGCC
ATGCAAATTGTTGTACAAACATTACAAGACTCTGGATCGttGCTGGCATG
TATGTTGAATGCAAGTTGTATGGCTATGGTGCATGCTGGTTTGCCCATGA
AAAGTCTGATGGTTGCAGTAGCTTGTTGTGTTTGCAATGATCAGATCATC
ATTGATCCTACCTTGGAAGAGGAAGAGAACAGTGTATGTGGGATGACGTT
TGCTTTTGGaacaaagaattttgaaatgatTGCTTCACATACGTACGGCT
CTTTCACTGTGGATCAGtaCATGACATGCTTGGAAAATTGTCGACGTGTT
GGTAAACAAATAGCTTCGTTTCAGAGAGATTCGATAACCCGTTTCCTTAG
CAAGGAAACAAACGAGGAAGAGACGGAGACCGAGGAAGAATGATTCAgac
aacaaaaaataaataaaatgaggGAGTTAGAATGTGAACTTGCATTTCTT
AGTAAATGTGATGGTTCAGCAGCATTCCAACATGgtACAACCAAAACACT
ATGTGCTGTTTACGGACCAGTGGAGGTCAAATTAAACCAGGAGAAAGTTG
ATCGAGCAACACTGGACTGTATTATTAAACCAAAAGTTGGTCTAGGCAGT
GTGAAGGAGAAGTCATTAGAAGCCATAGTCTCGAAAACATGTGAAGAAGT
TGCATTAACCACGCTCCACCCTCGATCTGCCATGCAAATTGTTGTACAAA
CATTACAAGACTCTGGATCGttGCTGGCATGTATGTTGAATGCAAGTTGT
ATGGCTATGGTGCATGCTGGTTTGCCCATGAAAAGTCTGATGGTTGCAGT
AGCTTGTTGTGTTTGCAATGATCAGATCATCATTGATCCTACCTTGGAAG
AGGAAGAGAACAGTGTATGTGGGATGACGTTTGCTTTTGGaacaaagaat
tttgaaatgatTGCTTCACATACGTACGGCTCTTTCACTGTGGATCAGta
CATGACATGCTTGGAAAATTGTCGACGTGTTGGTAAACAAATAGCTTCGT
TTCAGAGAGATTCGATAACCCGTTTCCTTAGCAAGGAAACAAACGAGGAA
GAGACGGAGACCGAGGAAGAATGATTCAgacaacaaaaaataaataaaat
gaggGAGTTAGAATGTGAACTTGCATTTCTTAGTAAATGTGATGGTTCAG
CAGCATTCCAACATGgtACAACCAAAACACTATGTGCTGTTTACGGACCA
GTGGAGGTCAAATTAAACCAGGAGAAAGTTGATCGAGCAACACTGGACTG
TATTATTAAACCAAAAGTTGGTCTAGGCAGTGTGAAGGAGAAGTCATTAG
AAGCCATAGTCTCGAAAACATGTGAAGAAGTTGCATTAACCACGCTCCAC
CCTCGATCTGCCATGCAAATTGTTGTACAAACATTACAAGACTCTGGATC
GttGCTGGCATGTATGTTGAATGCAAGTTGTATGGCTATGGTGCATGCTG
GTTTGCCCATGAAAAGTCTGATGGTTGCAGTAGCTTGTTGTGTTTGCAAT
GATCAGATCATCATTGATCCTACCTTGGAAGAGGAAGAGAACAGTGTATG
TGGGATGACGTTTGCTTTTGGaacaaagaattttgaaatgatTGCTTCAC
ATACGTACGGCTCTTTCACTGTGGATCAGtaCATGACATGCTTGGAAAAT
TGTCGACGTGTTGGTAAACAAATAGCTTCGTTTCAGAGAGATTCGATAAC
CCGTTTCCTTAGCAAGGAAACAAACGAGGAAGAGACGGAGACCGAGGAAG
AATGATTCAgacaacaaaaaataaataaaatgaggGAGTTAGAATGTGAA
CTTGCATTTCTTAGTAAATGTGATGGTTCAGCAGCATTCCAACATGgtAC
AACCAAAACACTATGTGCTGTTTACGGACCAGTGGAGGTCAAATTAAACC
AGGAGAAAGTTGATCGAGCAACACTGGACTGTATTATTAAACCAAAAGTT
GGTCTAGGCAGTGTGAAGGAGAAGTCATTAGAAGCCATAGTCTCGAAAAC
ATGTGAAGAAGTTGCATTAACCACGCTCCACCCTCGATCTGCCATGCAAA
TTGTTGTACAAACATTACAAGACTCTGGATCGttGCTGGCATGTATGTTG
AATGCAAGTTGTATGGCTATGGTGCATGCTGGTTTGCCCATGAAAAGTCT
GATGGTTGCAGTAGCTTGTTGTGTTTGCAATGATCAGATCATCATTGATC
CTACCTTGGAAGAGGAAGAGAACAGTGTATGTGGGATGACGTTTGCTTTT
GGaacaaagaattttgaaatgatTGCTTCACATACGTACGGCTCTTTCAC
TGTGGATCAGtaCATGACATGCTTGGAAAATTGTCGACGTGTTGGTAAAC
AAATAGCTTCGTTTCAGAGAGATTCGATAACCCGTTTCCTTAGCAAGGAA
ACAAACGAGGAAGAGACGGAGACCGAGGAAGAATGATTCAgacaacaaaa
aataaataaaatgaggGAGTTAGAATGTGAACTTGCATTTCTTAGTAAAT
GTGATGGTTCAGCAGCATTCCAACATGgtACAACCAAAACACTATGTGCT
GTTTACGGACCAGTGGAGGTCAAATTAAACCAGGAGAAAGTTGATCGAGC
AACACTGGACTGTATTATTAAACCAAAAGTTGGTCTAGGCAGTGTGAAGG
AGAAGTCATTAGAAGCCATAGTCTCGAAAACATGTGAAGAAGTTGCATTA
ACCACGCTCCACCCTCGATCTGCCATGCAAATTGTTGTACAAACATTACA
AGACTCTGGATCGttGCTGGCATGTATGTTGAATGCAAGTTGTATGGCTA
TGGTGCATGCTGGTTTGCCCATGAAAAGTCTGATGGTTGCAGTAGCTTGT
TGTGTTTGCAATGATCAGATCATCATTGATCCTACCTTGGAAGAGGAAGA
GAACAGTGTATGTGGGATGACGTTTGCTTTTGGaacaaagaattttgaaa
tgatTGCTTCACATACGTACGGCTCTTTCACTGTGGATCAGtaCATGACA
TGCTTGGAAAATTGTCGACGTGTTGGTAAACAAATAGCTTCGTTTCAGAG
AGATTCGATAACCCGTTTCCTTAGCAAGGAAACAAACGAGGAAGAGACGG
AGACCGAGGAAGAATGATTCAgacaacaaaaaataaataaaatgaggGAG
TTAGAATGTGAACTTGCATTTCTTAGTAAATGTGATGGTTCAGCAGCATT
CCAACATGgtACAACCAAAACACTATGTGCTGTTTACGGACCAGTGGAGG
TCAAATTAAACCAGGAGAAAGTTGATCGAGCAACACTGGACTGTATTATT
AAACCAAAAGTTGGTCTAGGCAGTGTGAAGGAGAAGTCATTAGAAGCCAT
AGTCTCGAAAACATGTGAAGAAGTTGCATTAACCACGCTCCACCCTCGAT
CTGCCATGCAAATTGTTGTACAAACATTACAAGACTCTGGATCGttGCTG
GCATGTATGTTGAATGCAAGTTGTATGGCTATGGTGCATGCTGGTTTGCC
CATGAAAAGTCTGATGGTTGCAGTAGCTTGTTGTGTTTGCAATGATCAGA
TCATCATTGATCCTACCTTGGAAGAGGAAGAGAACAGTGTATGTGGGATG
ACGTTTGCTTTTGGaacaaagaattttgaaatgatTGCTTCACATACGTA
CGGCTCTTTCACTGTGGATCAGtaCATGACATGCTTGGAAAATTGTCGAC
GTGTTGGTAAACAAATAGCTTCGTTTCAGAGAGATTCGATAACCCGTTTC
CTTAGCAAGGAAACAAACGAGGAAGAGACGGAGACCGAGGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004284XLOC_004284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007593-exon-sc0000078-1491911889:484420..484510TCONS_00007593-exon-sc0000078-1491911889:484420..484510Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:484420..484510TCONS_00007593-exon-sc0000078-1510915933:484420..484510Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:484420..484510TCONS_00007593-exon-sc0000078-1575043694:484420..484510Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:484939..484979TCONS_00007593-exon-sc0000078-1491911889:484939..484979Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:484939..484979TCONS_00007593-exon-sc0000078-1510915933:484939..484979Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:484939..484979TCONS_00007593-exon-sc0000078-1575043694:484939..484979Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:486056..486128TCONS_00007593-exon-sc0000078-1491911889:486056..486128Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:486056..486128TCONS_00007593-exon-sc0000078-1510915933:486056..486128Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:486056..486128TCONS_00007593-exon-sc0000078-1575043694:486056..486128Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:487056..487177TCONS_00007593-exon-sc0000078-1491911889:487056..487177Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:487056..487177TCONS_00007593-exon-sc0000078-1510915933:487056..487177Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:487056..487177TCONS_00007593-exon-sc0000078-1575043694:487056..487177Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:487616..487753TCONS_00007593-exon-sc0000078-1491911889:487616..487753Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:487616..487753TCONS_00007593-exon-sc0000078-1510915933:487616..487753Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:487616..487753TCONS_00007593-exon-sc0000078-1575043694:487616..487753Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:488044..488133TCONS_00007593-exon-sc0000078-1491911889:488044..488133Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:488044..488133TCONS_00007593-exon-sc0000078-1510915933:488044..488133Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:488044..488133TCONS_00007593-exon-sc0000078-1575043694:488044..488133Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:493123..493209TCONS_00007593-exon-sc0000078-1491911889:493123..493209Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:493123..493209TCONS_00007593-exon-sc0000078-1510915933:493123..493209Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:493123..493209TCONS_00007593-exon-sc0000078-1575043694:493123..493209Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1491911889:493825..494714TCONS_00007593-exon-sc0000078-1491911889:493825..494714Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1510915933:493825..494714TCONS_00007593-exon-sc0000078-1510915933:493825..494714Clytia hemisphaericaexon
TCONS_00007593-exon-sc0000078-1575043694:493825..494714TCONS_00007593-exon-sc0000078-1575043694:493825..494714Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007593-proteinTCONS_00007593-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:484420..494714 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31147	0.659222	5.01759	0.00579114	1.26446e-08	2.90701e-10	0.181162	0.00241532	12.309	10.5956	10.853	1.25335	5.97668	1.81594e-05	4.10588e-09	0.76081	1.50415	3.44943	3.20409	3.28477	0.010434	5.97433	0.013313	6.95712	3.32468e-10	0	0.492722	2.80762e-08	0.160244	1.94262
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
Blast
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BLAST of TCONS_00007593 vs. Swiss-Prot (Human)
Match: EXOS5 (Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.071e-49
Identity = 87/207 (42.03%), Postives = 135/207 (65.22%), Query Frame = 1 
Query:   25 MRELECELAFLSKCDGSAAFQHGTTKTLCAVYGPVEVKLNQEKVDRATLDCIIKPKVGLGSVKEKSLEAIVSKTCEEVALTTLHPRSAMQIVVQTLQDSGSLLACMLNASCMAMVHAGLPMKSLMVAVACCVCND-QIIIDPTLEEEENSVCGMTFAFGTKNFEMIASHTYGSFTVDQYMTCLENCRRVGKQIASFQRDSITRFLSK 642
            +R   CE   LS+ DGSA+F  G T  L  VYGP EVK+++E  ++ATL+ I++PK+GL  V EKS E ++  TCE V L TLHPR+++ +V+Q + D+GSLLAC LNA+CMA+V AG+PM++L   VAC + +D  +++DPT ++E+ +   +TFA  +   +++ S T G ++  +   CL   +   + +  F R+S+ R  SK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00007593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS52.071e-4942.03Exosome complex component RRP46 OS=Homo sapiens GN... [more]
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