TCONS_00007593-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007593-protein
Unique NameTCONS_00007593-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007593-protein ID=TCONS_00007593-protein|Name=TCONS_00007593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
FRQQKINKMRELECELAFLSKCDGSAAFQHGTTKTLCAVYGPVEVKLNQE
KVDRATLDCIIKPKVGLGSVKEKSLEAIVSKTCEEVALTTLHPRSAMQIV
VQTLQDSGSLLACMLNASCMAMVHAGLPMKSLMVAVACCVCNDQIIIDPT
LEEEENSVCGMTFAFGTKNFEMIASHTYGSFTVDQYMTCLENCRRVGKQI
ASFQRDSITRFLSKETNEEETETEEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004284XLOC_004284Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007593TCONS_00007593Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR020568Ribosomal_S5_D2-typ_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 9..128
e-value: 6.2E-23
score: 81.6
IPR027408PNPase/RNase PH domainGENE3D3.30.230.70coord: 3..226
e-value: 2.1E-49
score: 167.8
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 132..191
e-value: 5.6E-10
score: 39.0
IPR015847Exoribonuclease, phosphorolytic domain 2SUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 128..213
NoneNo IPR availableCDDcd11372RNase_PH_RRP46coord: 9..205
e-value: 1.30054E-87
score: 259.034
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 7..126

Blast
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BLAST of TCONS_00007593-protein vs. Swiss-Prot (Human)
Match: EXOS5 (Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 5.393e-54
Identity = 87/207 (42.03%), Postives = 135/207 (65.22%), Query Frame = 0 
Query:    9 MRELECELAFLSKCDGSAAFQHGTTKTLCAVYGPVEVKLNQEKVDRATLDCIIKPKVGLGSVKEKSLEAIVSKTCEEVALTTLHPRSAMQIVVQTLQDSGSLLACMLNASCMAMVHAGLPMKSLMVAVACCVCND-QIIIDPTLEEEENSVCGMTFAFGTKNFEMIASHTYGSFTVDQYMTCLENCRRVGKQIASFQRDSITRFLSK 214
            +R   CE   LS+ DGSA+F  G T  L  VYGP EVK+++E  ++ATL+ I++PK+GL  V EKS E ++  TCE V L TLHPR+++ +V+Q + D+GSLLAC LNA+CMA+V AG+PM++L   VAC + +D  +++DPT ++E+ +   +TFA  +   +++ S T G ++  +   CL   +   + +  F R+S+ R  SK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSK 234
The following BLAST results are available for this feature:
BLAST of TCONS_00007593-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS55.393e-5442.03Exosome complex component RRP46 OS=Homo sapiens GN... [more]
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