TCONS_00007572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007572
Unique NameTCONS_00007572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007572 ID=TCONS_00007572|Name=TCONS_00007572|organism=Clytia hemisphaerica|type=transcript|length=881bp
TATGCTATTCGTTGGATTGTAATTTTACTCCTTTTATATAAATCCAATAG
GGAAATTTTCAACGAGAAAAAGTACAGAAAATTTGGGAACTGGAACCTGC
ATCATTTTTTAACAGGAAAATTCTTTCTTAATAGGATGtggttttttata
ttttctcagCTATTACTGatttttatgGTTGACGCAAGGTTTTTATTATG
GACTCGCCTTGTGCATTATGAAAACCCATCAAACTTGGATGCTTCGTGGA
CCTGTTGTGTACAGGGAACAAGTACTTGTCGACATTCCTGCAATACAAAA
TTCACTATCTGCATATCAACAGTTACAGAACCAAACAAATGTGTTTACAA
GAGTTTCACCACCAACTCCTACCCTGATGGAAAGATCATTGACTTTGTTG
AAACGTTAAGAGGTGGACACTTGAACCCTTTCACTGTTGCGTTGGATCAA
TCTCagGACGTTTATTTCGAGATAAAAGCAGAACTTGACGATGGACGTAG
CATtgtgaattttgttgaaaataatttgaatcttACCATCACTGCATCAG
CCAATCAGAGTGCAGTTGTCGAGAAGAATTTTGAAGTGTATGGCACTGAT
AGAAGACATAAAGATAAATTCAAGAAAGTGAGAATTGAATTCAGGTTATC
TTGCCAACCGAACTATATGTTACCAGATTGTCAACGATACTGTAAACCTC
ACAACGATGATACAAATGGACATTACAAGTGTGATAGCCAACTTGGTAAA
GTCTGTTTAGATGGATGGGTAGAACCAAGAACTAATTGTACTAAATTAAA
CGAAACAATGTCATCATCGTCACGTGATGCCTGGATGTCAGGATCAACCG
ATATCAGTACACTGAGCACATCAACAAGTCC
Run BLAST on NCBI

transcript from alignment at sc0000078:259477..262919+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007572 ID=TCONS_00007572|Name=TCONS_00007572|organism=Clytia hemisphaerica|type=transcript|length=3443bp|location=Sequence derived from alignment at sc0000078:259477..262919+ (Clytia hemisphaerica)
TATGCTATTCGTTGGATTGTAATTTTACTCCTTTTATATAAATCCAATAG
GGAAATTTTCAACGAGAAAAAGTACAGAAAATTTGGGAACTGGAACCTGC
ATCATTTTTTAACAGGAAAATTCTTTCTTAATAGGATGtggttttttata
ttttctcagCTATTACTGGTAAGGTACTATATCAATTTTAATCTTATTTA
AAATTTAGTCCATAATGGATAATGATATATTTAATTGTAAACGATATTAA
AAACTCGAAGCTAATAACCTGAGTTTGATTAAGAATTAATCCAtcataat
aaatataattttaacGATTTTAACTTGGAGATCAttgacactaaaatgga
gtttACCGATGCGTGTTGACAGTATTAAGCTGTAGTATCGAGTAAAATTG
AGACTACGGCGAAAGTTGTCGCTATTCCGAAGATATATATGGTGGCTGAG
CGTTGTAATAGTGAAATTCGGAAAAAATtggaacaaaaaaataatttttt
tggaaaaatattagaaaaaaaaattaaaatataaaaagttttttgaaaaa
aaaagataaaaaatgttcttttccaaaaaaaattttttttgtcctttttt
gctaaattccgtttttccacactaaaattgtctaattttccgtctccgtc
agagaacccaatttccgtaattccgtcaaaattttcgccaaattccatca
ctccgtccgaaaaaagggccgattccgctcctccgccaaccatgaaaccc
cccctacctatttctttagatttttatgGTTGACGCAAGGTTTTTATTAT
GGACTCGCCTTGTGCATTATGAAAACCCATCAAACTTGGATGCTTCGTGG
ACCTGTTGTGTACAGGGAACAAGTACTTGTCGACATTCCTGCAATACAAA
ATTCACTATCTGCATATCAACAGTTACAGAACCAAACAAATGTGTTTACA
AGAGTTTCACCACCAACTCCTACCCTGATGGAAAGATCATTGACTTTGTT
GAAACGTTAAGAGGTGGACACTTGAACCCTTTCACTGTTGCGTTGGATCA
ATCTCaggtatttgattttttcagttacATATAATGTAGAAAGAATCCTT
GTTTCGAGtcctttgaaaatttcgaaagcTTTCGATTAACCTGAAAAAGG
CCTAAGCCCAAAGTTTGCACTTTTAtcacttttataaaaagtgtacaaat
gagcggccgtagcatgaaggtagagcatccagctatggtgcgcaaggttg
tgggttcaatcccaaGCCGgctcataccaaagattcccaaaatggtactt
gatgcctctctgcttgatgctcagcaactaaagagacggatcaagggtaa
gtggagaaatcaagggaaaggagtggtgccctcccctaccttcggctata
cgaaaagggagccttcgggtcgccctcgactgtgGTCGCAAGCTTACTTA
CTACTACTAAAAATGCGTTAGAGAATGCTTGTGTCggtgtttttttttag
aatgtaccaaattgtcttttttggaaacttttacatgagtatttcaattt
attatgagaaaaagagatatgatgaaataatctaatttttttagtCCGGC
TTTAATTGGGTGAGTTGAACAGCTACAATTTAAGGACAAAATTAGGAGTA
GTCTTGGATGAGAGCTTTCTTCTGTGCAGATGGATGAAAAATTCCACAGT
TaattattttggcgggaactaattttgacgagcgACAAAAATCctgcaaa
tttttaattttggcgagaacttattttggcaaatgacagcataaatctgt
tctattttgtcttatttgaagctttttttgtgaactcaagaagttattta
ggcaaaataccaaaaaatttaattttggcgagaactaattttggcaaatt
ttgtctaaattcgccgaattcgccaaaatcagttcccgccaaaataaatt
cccttAATAATAAactccaaattttgccaaaatgaCAATGGGGTCCCTAT
CCTTATGCATTCTATTTGACGCCTTTCGAAATTCTAGTTGGGAAGGGGCT
ATTACACAGCACACTATTCTAATTCACGGTCTTCAAATTTCCTCAGGACG
TTTATTTCGAGATAAAAGCAGAACTTGACGATGGACGTAGCATtgtgaat
tttgttgaaaataatttgaatcttACCATCACTGCATCAGCCAATCAGAG
TGCAGTTGTCGAGAAGAATTTTGAAGTGTATGGCACTGATAGAAGACATA
AAGATAAATTCAAGAAAGTGAGAATTGAATTCAGGTGTGTGAATTATATT
CAAACTGAAACCCTGTCACTTAGTTCCGTTTTTCATAttcttatacacgt
ttttttataagagcaaactatataataacataaggcttcgatggtcaaaa
tgttaaaaacaagttaagatcattttaaagctttgcagactctaaaacac
ccaatttcttaggaaaatcgacaaaaatgttcaaaaatggtgaaaataag
aacatgttaagaacatttttacgcttgaaactcaaaaaattaagaacatc
caaaggcttcaaaaattttagatgttcttaaataaaaaacgtgtagcgcT
CACAATTGAATCTGTATTGTCTATCAATAGAGTCATCAAATATGTTAAAA
GTGGCTCTGGCTACGAGATTGAATTATAAAAACCTCATGTAGAAACCCTT
TTTTTGGGAACACAAAAACTCTTATTGTAGTACCTACGTACCCAAAAATG
AACCCTGAAATCatgggataaatttgaaaagattttaggtAAAATGTCTG
GCTCAGCAAACTCTCAACTCATATCTGATATCTACCATTCCCACAAATTT
CAGGTTATCTTGCCAACCGAACTATATGTTACCAGATTGTCAACGATACT
GTAAACCTCACAACGATGATACAAATGGACATTACAAGTGTGATAGCCAA
CTTGGTAAAGTCTGTTTAGATGGATGGGTAGAACCAAGAACTAATTGTAC
TAAATGTGAGTAGTTGTTACGTTTCTCTAGATACTGTATCTAATCTAATC
CCTTGCTATTTTTTCTATTAtgttttttgtctgtttttgttttttttgtc
gtctGTTTGACGTTGGGTATCGAAGCTCAAGGAATGTCAACACAACCTCT
TCTAGTCTAGCATGCTTGACAACTTAATTCAGACATggtaaaaattagca
aaaaataatggaatGGATAAAttgtagtttatacaaactgagatattaca
attacaaaaaaaaccCGTTACaattattgaattattttaaacattttaaa
acacCAATATTGCTGTTGCCTGTATAATAAAAGACTCTTGTCTACTTTTT
TGTAACAGTAAACGAAACAATGTCATCATCGTCACGTGATGCCTGGATGT
CAGGATCAACCGATATCAGTACACTGAGCACATCAACAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004276XLOC_004276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007572-exon-sc0000078-1491911889:259477..259644TCONS_00007572-exon-sc0000078-1491911889:259477..259644Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1510915933:259477..259644TCONS_00007572-exon-sc0000078-1510915933:259477..259644Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1575043694:259477..259644TCONS_00007572-exon-sc0000078-1575043694:259477..259644Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1491911889:260246..260533TCONS_00007572-exon-sc0000078-1491911889:260246..260533Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1510915933:260246..260533TCONS_00007572-exon-sc0000078-1510915933:260246..260533Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1575043694:260246..260533TCONS_00007572-exon-sc0000078-1575043694:260246..260533Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1491911889:261573..261760TCONS_00007572-exon-sc0000078-1491911889:261573..261760Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1510915933:261573..261760TCONS_00007572-exon-sc0000078-1510915933:261573..261760Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1575043694:261573..261760TCONS_00007572-exon-sc0000078-1575043694:261573..261760Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1491911889:262330..262481TCONS_00007572-exon-sc0000078-1491911889:262330..262481Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1510915933:262330..262481TCONS_00007572-exon-sc0000078-1510915933:262330..262481Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1575043694:262330..262481TCONS_00007572-exon-sc0000078-1575043694:262330..262481Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1491911889:262835..262919TCONS_00007572-exon-sc0000078-1491911889:262835..262919Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1510915933:262835..262919TCONS_00007572-exon-sc0000078-1510915933:262835..262919Clytia hemisphaericaexon
TCONS_00007572-exon-sc0000078-1575043694:262835..262919TCONS_00007572-exon-sc0000078-1575043694:262835..262919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:259477..262919 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102965	0.119553	0.0584818	0.071196	0.11252	0.0678754	0.254176	0.133466	0.165319	0.160463	0.316446	1.05335	1.24345	0.389718	0.772112	0.0792649	0.649952	2.30098	4.87435	0.510445	0.373466	0.181599	0.440265	3.86406	3.2091	0	0.0772581	0.292988	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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