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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007572 ID=TCONS_00007572|Name=TCONS_00007572|organism=Clytia hemisphaerica|type=transcript|length=881bp TATGCTATTCGTTGGATTGTAATTTTACTCCTTTTATATAAATCCAATAG GGAAATTTTCAACGAGAAAAAGTACAGAAAATTTGGGAACTGGAACCTGC ATCATTTTTTAACAGGAAAATTCTTTCTTAATAGGATGtggttttttata ttttctcagCTATTACTGatttttatgGTTGACGCAAGGTTTTTATTATG GACTCGCCTTGTGCATTATGAAAACCCATCAAACTTGGATGCTTCGTGGA CCTGTTGTGTACAGGGAACAAGTACTTGTCGACATTCCTGCAATACAAAA TTCACTATCTGCATATCAACAGTTACAGAACCAAACAAATGTGTTTACAA GAGTTTCACCACCAACTCCTACCCTGATGGAAAGATCATTGACTTTGTTG AAACGTTAAGAGGTGGACACTTGAACCCTTTCACTGTTGCGTTGGATCAA TCTCagGACGTTTATTTCGAGATAAAAGCAGAACTTGACGATGGACGTAG CATtgtgaattttgttgaaaataatttgaatcttACCATCACTGCATCAG CCAATCAGAGTGCAGTTGTCGAGAAGAATTTTGAAGTGTATGGCACTGAT AGAAGACATAAAGATAAATTCAAGAAAGTGAGAATTGAATTCAGGTTATC TTGCCAACCGAACTATATGTTACCAGATTGTCAACGATACTGTAAACCTC ACAACGATGATACAAATGGACATTACAAGTGTGATAGCCAACTTGGTAAA GTCTGTTTAGATGGATGGGTAGAACCAAGAACTAATTGTACTAAATTAAA CGAAACAATGTCATCATCGTCACGTGATGCCTGGATGTCAGGATCAACCG ATATCAGTACACTGAGCACATCAACAAGTCC Run BLAST on NCBI transcript from alignment at sc0000078:259477..262919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007572 ID=TCONS_00007572|Name=TCONS_00007572|organism=Clytia hemisphaerica|type=transcript|length=3443bp|location=Sequence derived from alignment at sc0000078:259477..262919+ (Clytia hemisphaerica) TATGCTATTCGTTGGATTGTAATTTTACTCCTTTTATATAAATCCAATAG
GGAAATTTTCAACGAGAAAAAGTACAGAAAATTTGGGAACTGGAACCTGC
ATCATTTTTTAACAGGAAAATTCTTTCTTAATAGGATGtggttttttata
ttttctcagCTATTACTGGTAAGGTACTATATCAATTTTAATCTTATTTA
AAATTTAGTCCATAATGGATAATGATATATTTAATTGTAAACGATATTAA
AAACTCGAAGCTAATAACCTGAGTTTGATTAAGAATTAATCCAtcataat
aaatataattttaacGATTTTAACTTGGAGATCAttgacactaaaatgga
gtttACCGATGCGTGTTGACAGTATTAAGCTGTAGTATCGAGTAAAATTG
AGACTACGGCGAAAGTTGTCGCTATTCCGAAGATATATATGGTGGCTGAG
CGTTGTAATAGTGAAATTCGGAAAAAATtggaacaaaaaaataatttttt
tggaaaaatattagaaaaaaaaattaaaatataaaaagttttttgaaaaa
aaaagataaaaaatgttcttttccaaaaaaaattttttttgtcctttttt
gctaaattccgtttttccacactaaaattgtctaattttccgtctccgtc
agagaacccaatttccgtaattccgtcaaaattttcgccaaattccatca
ctccgtccgaaaaaagggccgattccgctcctccgccaaccatgaaaccc
cccctacctatttctttagatttttatgGTTGACGCAAGGTTTTTATTAT
GGACTCGCCTTGTGCATTATGAAAACCCATCAAACTTGGATGCTTCGTGG
ACCTGTTGTGTACAGGGAACAAGTACTTGTCGACATTCCTGCAATACAAA
ATTCACTATCTGCATATCAACAGTTACAGAACCAAACAAATGTGTTTACA
AGAGTTTCACCACCAACTCCTACCCTGATGGAAAGATCATTGACTTTGTT
GAAACGTTAAGAGGTGGACACTTGAACCCTTTCACTGTTGCGTTGGATCA
ATCTCaggtatttgattttttcagttacATATAATGTAGAAAGAATCCTT
GTTTCGAGtcctttgaaaatttcgaaagcTTTCGATTAACCTGAAAAAGG
CCTAAGCCCAAAGTTTGCACTTTTAtcacttttataaaaagtgtacaaat
gagcggccgtagcatgaaggtagagcatccagctatggtgcgcaaggttg
tgggttcaatcccaaGCCGgctcataccaaagattcccaaaatggtactt
gatgcctctctgcttgatgctcagcaactaaagagacggatcaagggtaa
gtggagaaatcaagggaaaggagtggtgccctcccctaccttcggctata
cgaaaagggagccttcgggtcgccctcgactgtgGTCGCAAGCTTACTTA
CTACTACTAAAAATGCGTTAGAGAATGCTTGTGTCggtgtttttttttag
aatgtaccaaattgtcttttttggaaacttttacatgagtatttcaattt
attatgagaaaaagagatatgatgaaataatctaatttttttagtCCGGC
TTTAATTGGGTGAGTTGAACAGCTACAATTTAAGGACAAAATTAGGAGTA
GTCTTGGATGAGAGCTTTCTTCTGTGCAGATGGATGAAAAATTCCACAGT
TaattattttggcgggaactaattttgacgagcgACAAAAATCctgcaaa
tttttaattttggcgagaacttattttggcaaatgacagcataaatctgt
tctattttgtcttatttgaagctttttttgtgaactcaagaagttattta
ggcaaaataccaaaaaatttaattttggcgagaactaattttggcaaatt
ttgtctaaattcgccgaattcgccaaaatcagttcccgccaaaataaatt
cccttAATAATAAactccaaattttgccaaaatgaCAATGGGGTCCCTAT
CCTTATGCATTCTATTTGACGCCTTTCGAAATTCTAGTTGGGAAGGGGCT
ATTACACAGCACACTATTCTAATTCACGGTCTTCAAATTTCCTCAGGACG
TTTATTTCGAGATAAAAGCAGAACTTGACGATGGACGTAGCATtgtgaat
tttgttgaaaataatttgaatcttACCATCACTGCATCAGCCAATCAGAG
TGCAGTTGTCGAGAAGAATTTTGAAGTGTATGGCACTGATAGAAGACATA
AAGATAAATTCAAGAAAGTGAGAATTGAATTCAGGTGTGTGAATTATATT
CAAACTGAAACCCTGTCACTTAGTTCCGTTTTTCATAttcttatacacgt
ttttttataagagcaaactatataataacataaggcttcgatggtcaaaa
tgttaaaaacaagttaagatcattttaaagctttgcagactctaaaacac
ccaatttcttaggaaaatcgacaaaaatgttcaaaaatggtgaaaataag
aacatgttaagaacatttttacgcttgaaactcaaaaaattaagaacatc
caaaggcttcaaaaattttagatgttcttaaataaaaaacgtgtagcgcT
CACAATTGAATCTGTATTGTCTATCAATAGAGTCATCAAATATGTTAAAA
GTGGCTCTGGCTACGAGATTGAATTATAAAAACCTCATGTAGAAACCCTT
TTTTTGGGAACACAAAAACTCTTATTGTAGTACCTACGTACCCAAAAATG
AACCCTGAAATCatgggataaatttgaaaagattttaggtAAAATGTCTG
GCTCAGCAAACTCTCAACTCATATCTGATATCTACCATTCCCACAAATTT
CAGGTTATCTTGCCAACCGAACTATATGTTACCAGATTGTCAACGATACT
GTAAACCTCACAACGATGATACAAATGGACATTACAAGTGTGATAGCCAA
CTTGGTAAAGTCTGTTTAGATGGATGGGTAGAACCAAGAACTAATTGTAC
TAAATGTGAGTAGTTGTTACGTTTCTCTAGATACTGTATCTAATCTAATC
CCTTGCTATTTTTTCTATTAtgttttttgtctgtttttgttttttttgtc
gtctGTTTGACGTTGGGTATCGAAGCTCAAGGAATGTCAACACAACCTCT
TCTAGTCTAGCATGCTTGACAACTTAATTCAGACATggtaaaaattagca
aaaaataatggaatGGATAAAttgtagtttatacaaactgagatattaca
attacaaaaaaaaccCGTTACaattattgaattattttaaacattttaaa
acacCAATATTGCTGTTGCCTGTATAATAAAAGACTCTTGTCTACTTTTT
TGTAACAGTAAACGAAACAATGTCATCATCGTCACGTGATGCCTGGATGT
CAGGATCAACCGATATCAGTACACTGAGCACATCAACAAGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007572-exon-sc0000078-1491911889:259477..259644 | TCONS_00007572-exon-sc0000078-1491911889:259477..259644 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1510915933:259477..259644 | TCONS_00007572-exon-sc0000078-1510915933:259477..259644 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1575043694:259477..259644 | TCONS_00007572-exon-sc0000078-1575043694:259477..259644 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1491911889:260246..260533 | TCONS_00007572-exon-sc0000078-1491911889:260246..260533 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1510915933:260246..260533 | TCONS_00007572-exon-sc0000078-1510915933:260246..260533 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1575043694:260246..260533 | TCONS_00007572-exon-sc0000078-1575043694:260246..260533 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1491911889:261573..261760 | TCONS_00007572-exon-sc0000078-1491911889:261573..261760 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1510915933:261573..261760 | TCONS_00007572-exon-sc0000078-1510915933:261573..261760 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1575043694:261573..261760 | TCONS_00007572-exon-sc0000078-1575043694:261573..261760 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1491911889:262330..262481 | TCONS_00007572-exon-sc0000078-1491911889:262330..262481 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1510915933:262330..262481 | TCONS_00007572-exon-sc0000078-1510915933:262330..262481 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1575043694:262330..262481 | TCONS_00007572-exon-sc0000078-1575043694:262330..262481 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1491911889:262835..262919 | TCONS_00007572-exon-sc0000078-1491911889:262835..262919 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1510915933:262835..262919 | TCONS_00007572-exon-sc0000078-1510915933:262835..262919 | Clytia hemisphaerica | exon |
TCONS_00007572-exon-sc0000078-1575043694:262835..262919 | TCONS_00007572-exon-sc0000078-1575043694:262835..262919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000078 | supercontig | sc0000078:259477..262919 + |
Blast
The following BLAST results are available for this feature:
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