Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=transcript|length=753bp
TCCCCCCTCACTGCTTACAAACAAAATGGATGTCAtccttaaggcttggg
gacacgagaagtttttttcgcgttggtgcaatgcaacatgctccatgcCT
TTAAAATATGTGATTGTTTTTTTAGATATTCCTGATGGTGATAGTGTTGT
CGATGAAGAAGAAGATAGTTCACAATATGGCAATGATGTCACTATACTTG
ACCTACTTGACAATGTGGGTGTGGTCCATGAGTTGTCAGCACAGCTAGAT
GATTATCAGAACCGCTGGTATCTCCGTCTCGCTCAATGGTTAAGTAAGGA
AAGATTGATCAGTACTACCAAGTTTGACCATTTAGAACGTGCTTTTCATG
GTGGCGGCAGTCCCACATTAGCTTGGCTTAACGCAAACAAAGTATATCAC
CCTGACGATGCAATCAGTAAACTAAAGGAATGTGCTGTGAAGCACCGTCG
TGGAGATGTTATGAAAATTATCGACCACGTGGCAGACGATTTAAGGATGT
CAGTTCTATCGTTGCAAGTTCAACATCAAATCGCTGATCTCTTGGATCAA
ACAATTGTTGGCGCAAGTAATTGGGAATCTTTTGCCTCACACTTTGGATT
TGACTACTCTAGTCTGAAGATGTTTcgagctgaacgcactaaaccTGGTG
ATTTTAGCCCTACTAAATGGCTTTTAGAATTGTGCCGCAACGAAAACCCA
AGTCTCACTGTTAACCACTTAATCAGATGGGCGAAGAAAGCAGGAAGGAA
TGA Run BLAST on NCBI protein sequence of TCONS_00007492-protein >TCONS_00007492-protein ID=TCONS_00007492-protein|Name=TCONS_00007492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
PPSLLTNKMDVILKAWGHEKFFSRWCNATCSMPLKYVIVFLDIPDGDSVV
DEEEDSSQYGNDVTILDLLDNVGVVHELSAQLDDYQNRWYLRLAQWLSKE
RLISTTKFDHLERAFHGGGSPTLAWLNANKVYHPDDAISKLKECAVKHRR
GDVMKIIDHVADDLRMSVLSLQVQHQIADLLDQTIVGASNWESFASHFGF
DYSSLKMFRAERTKPGDFSPTKWLLELCRNENPSLTVNHLIRWAKKAGRN Run BLAST on NCBI transcript from alignment at sc0000077:541485..547891- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at sc0000077:541485..547891- (Clytia hemisphaerica)
TCCCCCCTCACTGCTTACAAACAAAATGGATGTCATCCTTAAGGCTTGGG
GACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCATGCCT
TTAAAATATGTGATTGTTTTTTTAGATATTCCTGATGGTGATAGTGTTGT
CGATGAAGAAGAAGATAGTTCACAATATGGCAGTAAGCAGTGAATTTTAA
CTCTAAATGTTGTTCACCCTTCAGGGGGGGTCAAGCAGTTACTCCGGAAC
ACTTTCTTGATGGGAGATATCCAAAAAAGAATTTTTTTTACAGTCTAAAG
AAAACAGCGAATCAAAACTATACTCTTTTTTATAAAAAAAAGTTATAAGC
ACACGAGGCTGAAAATTGACCAAAACCTAAGAACGAATTAAGAACAATCC
TGAGCCTCAGATATCAGGAATCCCCCCCGGACATTCAAGGTAAATGACTT
ACCAGACGTGTGGCACTTAATAATCGGTTTTTCAAGGTTCAGCTAGTGCA
CCGTAGGGGTATGTTTTGACCAGTGCAGTACTGTCAGGGTAGAAAATTAC
CTTGTTCCTATGAAAATTTTCTCTTTTAGGTAGGAAATTGAATCCCCAGA
TTAGCATCAGCAGGCTTTTTGTCAAGAAATAACTAAGAACTAAAAACTTA
GTCTCGAAAAAAAACTCATTGCCCTAAGGGTTGCAACAAAAGGAAAAATC
GCGAGAAAACCTCGATTTTTGTCCTTCAAAAGTTTAAATTTCGGAAAAAA
GTCACGATAAGAGTCCCTCCTAAACTCCCAAACTTTCGACTTTTTTTCTT
CATTTTTTTTCAAGCCATTTAGCATCAGCAGGCTTTTTGTCAAGAAATAA
CTAAGAAGTAAACCATGAACAGTCAACCTAATCAACCAAAAGATTTAGTT
TGTCTCGGCCTCGCTAGTGGGCAATTTTTGGACCTACCCCGGTGGGGTAG
AGGTCCTATAAATTAACCGATGTCCGTTCGTTCGTTCGTCTGTTCGTTCG
TCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTC
TGATTTTTGGCACAATGATTGGCACAATGATGCAAAATGGCAATGCCCAA
AATGTGACGGAGCCCGATTTTGGAAGAAAAAAAATTTTCCGGCCGAAAAT
GCCGGAAATATGCCGGAAAAACAGGTTTTTTGGCATTTTCTCGAGATTTT
ATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCC
CAAAACATGGCCGAGTCCGATTTTTGAAAAAAAGATTTTTCCGGCCGAAA
ATGCCGGAAATATGCCGGAAAAACAGGTTTTTTGGCATTTTCTCGAGATT
TTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATG
CCCAAAACATGGCCGAGTCCGATTTTTGAAAAAAAGATTTTTCCGGCCGA
AAATGCCGGAAATATGCCGGAAATCACCGTTTTTGCAGATTTGAATTGGG
CTTTTTCCATATATTTCTCTGTTTTTTCACTTAAAAAGATTATTGATAAC
AATGCCACCATCAAGCATGATTCAATTGTCAATAAAACTTTTGCAATTTT
GCAACCGGAACTTTCTATTTCTTTTTTCCCTAAACCCCTCCCCCCCATCA
ACAATCAATGATGACATTTAGTGCATTTTCGCTAAGCGCTATATTTTCTT
AATGATTGTTTTTCTCCTTATTGCTATCTAAGTTTCATCATCAGGTAGGT
CCATTCAGCATGTTGCTTGTTATTTTTATAACATATTCATAAGTGTCGAT
CAAAATACGTTGGTTTGCATTCAAGAAAATAAACGACTCAAACGGAAAAA
GCCATTTCAGCGAAAATAAAATGTTACCAGAATTTCGTTAACCTTTAGAC
ACCGCTGTTTTTAAAAACAGCGCGCGCTGCTGCCGCTGTTTTTTTCATGA
AAATGGAGGTTTCGCGGAAAATGTCATAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTTT
ACGATTTTTTCACTTTTTTTCTTTTTTTTGACAAATTGAATGAAAAAAGT
GGGTACAAAGTAAAGATTGGTCCCAGAAAAAATATTTTGTTTTAATTTAT
GTTATAAGCCACCATTGCGTGAAATTTCAGGGCTGAAGAAGCTCATTTCA
TCTCAGAATCTAAGTTTCGGTGAAGCACACTTTTCCACCAAAATCGACGT
AAATCGACACTCTGGCCACAACAGGTAAAATAAGTGGTCCCGTTGCTCTA
AAATTGGCCCTGCACTTACCCTAAGCCTGTAAAATTACTACAATAATCAT
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTTTAAAAAATGAAC
CTTCACCCCTATCCTGTCTGCTAAATTTTACAGAATAGAAAAATTCAAAC
TGGTCTTTATTTTATTAAACTTTGAAAGGACCGCAGTATCAAAACGTACG
TGGTACGTCTCTCGGCCTGTATATATGACGTACGTGGTACGTCTCTCGGC
GGCTAAAGGTTAAATTGTCAAAAGCTTCTCCTACGGCGCCCTAAAAATTC
AATCGAGAGTAATATCCTTATTCGTTTGGCAGTTTATTGTTTCTTTTGCT
CGAAAAGTATTTTCCCTACAATACTCGCTTTAGATTTTCTTTTATCTCTT
ATTTTCACCCTTAGACTTATTAAAGAATTTCGAAAGTCATTACTCGTGTC
CTATCTGCTTGGACATTGCTGACGATGCAGTGGAGTGTACGAATTGCTTT
AAGATTTATTGCGGTGAATGTACAGAAGGAATAAACACGTGTCCCAGTTG
TCGCTGCACACCTTCTGCATGGCAACCAAGTCGTATTGCTCGACAGATCA
TTGATAATCTAAAAACCGATTGTCCTAATGATGGATGCAAGGAGAAGCCA
ACGCGGTCGAATCTGAAAGTTCATTTAGAGAAATGCGAATGGTCGCGTTG
ATTGCTACCTGTGACGCACTGTATGTATAGGGTGTCCGTAAAAAATATGG
GTTTGGCTACCAATTTTAGAATAATGTAATACCTTTTAGGAAAGCAAAAT
TTAGTGTTTAGCACACTCGTGGGTCCAAAGTGTCTATTACCTTATATATT
TTCGCGGGTACTAAATTTTCGCGAATCGCGAAATTTCTTCCGAGAAACAT
GTTTCGCGAGTATTAAATTTCGCGATTGTCACCTTCTAAAATTTTTTGCA
TGTATTAAATTTCACGATTCACTTAATCGAATATTAAAGAAAAGGTCTAG
TTTGACATGAAAACGACTTATTTTGTTTGAAACACAACATATTGGCTGAA
AAAATGGTATCAAAAGTGTAACACAATGTAAAAAGAATTTTCAACCTATT
TTGAAAATATTTTGCGTGTATTTAATTTCGCGATTTTGTGTTTTTGAAAA
ATTTAAACAACACAAAATTTCGCGAAATTTTGCCTAAAAAGTCGCGAAAT
TAAGTACACGCTAAAATATATACACTTTTATCGCGAAATTTTGCCTAAAA
AGTCGCGAAATTAAGTACACGCTAAAATATATACACTTTTAAGGTATTTC
CAAAGTTTTCTAGCTAAAACATGGAAGGAAGGAAGTATTTTGGAAAACGG
AGTAAAATCAATGGCGAAATTATTTTTATTTTGTACATGTAATACCGAAT
TCTAATTTAATTCAAGAAAAATCTCTAAAATTATATGTAATTTATGCGTA
ATTTATATTAAAAATAATCAACTTTTTGCTATTCATTTTTATAATTTGTG
ACCATTACTTATTCATTTACTAATCTTGTCTTAATCCTTGATTTCTTGAG
ACATTTTTTGAAGAATCAGACCGCAAATAAATGCCTAAAAAAAGTCTAGT
AGTTTCAATTTCAAGATCCTTTTTGTGGCAAATTGTAACGAAGATAGCAT
ACACTTTGTATGTTCCAGTCTTTGAACTAATTAATTTTTTTTTCAGCGCC
AAAAAAATTATAAAAATGATGTAATAATAGTTAACGCATACCATCCAACA
TTCAACATACTATGGCTTCGAAATCTTCTAAAAGATATTATATTTTGTTG
AAAGATATTGTTGGGTTCCAGAAAAAAAGTAGACTTCTGAGAGCAAAAAC
TTTGGAACAGTACCAAGCATTGATGGGAGAAATCTTTTATAAAGAAGAGA
AAAAGAATGAATTTGATGAATATATGTTTGTGTCAGCTGAAAATCAAGAC
CGACATGTGAGTTGTATAGAAGAGAATTTCAAACCCCTGCCAAGCAAGCT
GTTCAAAATATTGATCGCTGTGCCATCTAAGATTGAACGAATATATTTGT
TTAATTCTGATCAAATGGTGAAAAAGATATTGAACATTGAAGTTGGTGAT
ATGGTTGATGTTGAGTTAAACAATTCTGAAGGATTCAAAACGGTTTCGAG
TGGGAGGGTTGGCTTTGTTGGACAAATACAAGGAAGGCTTGGAGAATATT
TTGGAATTCGCTTTGAAGTAAGTGATTGTTGTTTTATCCTTTATTTTCAT
AATGATCATAACCTCTTGTTGGCGCTATTATTCACTTTGATTTAGTATTC
CTTTTTAAAAGCATTTTCATTAAATTAGTTTTCCTTCTCTGCGAGTTATT
CCCATTACAAAAAAATATACCTAAGCAAAGCGCTGTCCCATTTTTTTGCA
ACCTGCCTTAAGATTCTTGGAGTTCTTAGATAATTATAATATTTGATGGT
ACTAGATTTGAAAAATGAATTTGAAAATGAAAATTAACAGACCGTTACCC
CGTTAACATGCACATGTCCATTGACCACCTGGAAACTTACATAGTTTAAT
ATGTTTGCTATCCCTCATGACGAAATGTCTAATAAATTCTTACTCTGTGT
CTAGAGGAGTACATCTTTGGAAAAATGTTTTTTGATTATACTTAACATTA
TTCATGTCCTCCTACCATTTTCCTCACACAGCATCTTTAAACAAAATATT
GATTCGAAATTTCTACTTTCCTTCGCCTTGGCACAATATTCTTTTGTTTA
TTCTATTTGTCAGCATATAAGCTATTCTCATGCTTAAAATAGTTTGCACT
CTACCACAGAGACTCGATAAATATTTTTCACATTCGCGAAGAAAATGTTT
TTCTTGTAAATTTGTTACCTGTCCCTCCAAGATCCGACCGTGAAAATGTG
TACATATCAACCAGGTACCACAATAAGTATGTTGCATCATTTTGGGTACA
AATGCTAAAATAAATAGTAGGGGGGACTTTTTTTGGGAATTTTTATGTTG
AACCATCTTTTTGGACCTGGGGTGGAGGGTAACCTTTGTCCGTTCGTTCG
TTATTAGCTTTCCTCGTGATTGGCTCATTAGTTTTTTCTGATTTTTTGCA
CAAAGATGTGTAACTATAAACCCTCGAATGTGACGGAGCCCGATTTCAGA
AAAAAAAATTTGGGGGGCAAATTTGGGCCAAAATACAGCTAAGAAACTGG
TTATTATTTAAATCCTTTCTTACTCATACCTCGTCTAACAGTTATCGCTT
GTGCCATTCTAAAGGTATTTTCCGTCTCTCTTATAGATGATGTCACTATA
CTTGACCTACTTGACAATGTGGGTGTGGTCCATGAGTTGTCAGCACAGCT
AGATGATTATCAGAACCGCTGGTATCTCCGTCTCGCTCAATGGTTAAGTA
AGGAAAGATTGATCAGTACTACCAAGTTTGACCATTTAGAACGTGCTTTT
CATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAACGCAAACAAAGTATA
TCACCCTGACGATGCAATCAGTAAACTAAAGGAATGTGCTGTGAAGCACC
GTCGTGGAGATGTTATGAAAATTATCGACCACGTGGCAGACGATTTAAGG
ATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATCGCTGATCTCTTGGA
TCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTTTGCCTCACACTTTG
GATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTGAACGCACTAAACCT
GGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTGTGCCGCAACGAAAA
CCCAAGTCTCACTGTTAACCACTTAATCAGATGGGCGAAGAAAGCAGGAA
GGAATGA Coding sequence (CDS) from alignment at sc0000077:541485..547891- >TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000077:541485..547891- (Clytia hemisphaerica)
ATGATGTCACTATACTTGACCTACTTGACAATGTGGGTGTGGTCCATGAG
TTGTCAGCACAGCTAGATGATTATCAGAACCGCTGGTATCTCCGTCTCGC
TCAATGGTTAAGTAAGGAAAGATTGATCAGTACTACCAAGTTTGACCATT
TAGAACGTGCTTTTCATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAAC
GCAAACAAAGTATATCACCCTGACGATGCAATCAGTAAACTAAAGGAATG
TGCTGTGAAGCACCGTCGTGGAGATGTTATGAAAATTATCGACCACGTGG
CAGACGATTTAAGGATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATC
GCTGATCTCTTGGATCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTT
TGCCTCACACTTTGGATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTG
AACGCACTAAACCTGGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTG
TGCCGCAACGAAAACCCAAGTCTCACTGTTAACCACTTAATCAGATGGGC
GAAGAAAGCAGGAAGGAATCCCCCCTCACTGCTTACAAACAAAATGGATG
TCATCCTTAAGGCTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAAT
GCAACATGCTCCATGCCTTTAAAATATGTGATTGTTTTTTTAGATATTCC
TGATGGTGATAGTGTTGTCGATGAAGAAGAAGATAGTTCACAATATGGCA
ATGATGTCACTATACTTGACCTACTTGACAATGTGGGTGTGGTCCATGAG
TTGTCAGCACAGCTAGATGATTATCAGAACCGCTGGTATCTCCGTCTCGC
TCAATGGTTAAGTAAGGAAAGATTGATCAGTACTACCAAGTTTGACCATT
TAGAACGTGCTTTTCATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAAC
GCAAACAAAGTATATCACCCTGACGATGCAATCAGTAAACTAAAGGAATG
TGCTGTGAAGCACCGTCGTGGAGATGTTATGAAAATTATCGACCACGTGG
CAGACGATTTAAGGATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATC
GCTGATCTCTTGGATCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTT
TGCCTCACACTTTGGATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTG
AACGCACTAAACCTGGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTG
TGCCGCAACGAAAACCCAAGTCTCACTGTTAACCACTTAATCAGATGGGC
GAAGAAAGCAGGAAGGAATCCCCCCTCACTGCTTACAAACAAAATGGATG
TCATCCTTAAGGCTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAAT
GCAACATGCTCCATGCCTTTAAAATATGTGATTGTTTTTTTAGATATTCC
TGATGGTGATAGTGTTGTCGATGAAGAAGAAGATAGTTCACAATATGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007492-exon-sc0000077-1575043694:547710..547891 | TCONS_00007492-exon-sc0000077-1575043694:547710..547891 | Clytia hemisphaerica | exon |
| TCONS_00007492-exon-sc0000077-1575043694:541485..542055 | TCONS_00007492-exon-sc0000077-1575043694:541485..542055 | Clytia hemisphaerica | exon |
| TCONS_00007492-exon-sc0000077-1510915933:547710..547891 | TCONS_00007492-exon-sc0000077-1510915933:547710..547891 | Clytia hemisphaerica | exon |
| TCONS_00007492-exon-sc0000077-1510915933:541485..542055 | TCONS_00007492-exon-sc0000077-1510915933:541485..542055 | Clytia hemisphaerica | exon |
| TCONS_00007492-exon-sc0000077-1491911889:547710..547891 | TCONS_00007492-exon-sc0000077-1491911889:547710..547891 | Clytia hemisphaerica | exon |
| TCONS_00007492-exon-sc0000077-1491911889:541485..542055 | TCONS_00007492-exon-sc0000077-1491911889:541485..542055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:541485..547891 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011029 | DEATH-like_dom |
Blast
The following BLAST results are available for this feature:
|
