TCONS_00007492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007492
Unique NameTCONS_00007492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=transcript|length=753bp
TCCCCCCTCACTGCTTACAAACAAAATGGATGTCAtccttaaggcttggg
gacacgagaagtttttttcgcgttggtgcaatgcaacatgctccatgcCT
TTAAAATATGTGATTGTTTTTTTAGATATTCCTGATGGTGATAGTGTTGT
CGATGAAGAAGAAGATAGTTCACAATATGGCAATGATGTCACTATACTTG
ACCTACTTGACAATGTGGGTGTGGTCCATGAGTTGTCAGCACAGCTAGAT
GATTATCAGAACCGCTGGTATCTCCGTCTCGCTCAATGGTTAAGTAAGGA
AAGATTGATCAGTACTACCAAGTTTGACCATTTAGAACGTGCTTTTCATG
GTGGCGGCAGTCCCACATTAGCTTGGCTTAACGCAAACAAAGTATATCAC
CCTGACGATGCAATCAGTAAACTAAAGGAATGTGCTGTGAAGCACCGTCG
TGGAGATGTTATGAAAATTATCGACCACGTGGCAGACGATTTAAGGATGT
CAGTTCTATCGTTGCAAGTTCAACATCAAATCGCTGATCTCTTGGATCAA
ACAATTGTTGGCGCAAGTAATTGGGAATCTTTTGCCTCACACTTTGGATT
TGACTACTCTAGTCTGAAGATGTTTcgagctgaacgcactaaaccTGGTG
ATTTTAGCCCTACTAAATGGCTTTTAGAATTGTGCCGCAACGAAAACCCA
AGTCTCACTGTTAACCACTTAATCAGATGGGCGAAGAAAGCAGGAAGGAA
TGA
Run BLAST on NCBI

protein sequence of TCONS_00007492-protein

>TCONS_00007492-protein ID=TCONS_00007492-protein|Name=TCONS_00007492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
PPSLLTNKMDVILKAWGHEKFFSRWCNATCSMPLKYVIVFLDIPDGDSVV
DEEEDSSQYGNDVTILDLLDNVGVVHELSAQLDDYQNRWYLRLAQWLSKE
RLISTTKFDHLERAFHGGGSPTLAWLNANKVYHPDDAISKLKECAVKHRR
GDVMKIIDHVADDLRMSVLSLQVQHQIADLLDQTIVGASNWESFASHFGF
DYSSLKMFRAERTKPGDFSPTKWLLELCRNENPSLTVNHLIRWAKKAGRN
Run BLAST on NCBI

transcript from alignment at sc0000077:541485..547891-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at sc0000077:541485..547891- (Clytia hemisphaerica)
TCCCCCCTCACTGCTTACAAACAAAATGGATGTCATCCTTAAGGCTTGGG
GACACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCATGCCT
TTAAAATATGTGATTGTTTTTTTAGATATTCCTGATGGTGATAGTGTTGT
CGATGAAGAAGAAGATAGTTCACAATATGGCAGTAAGCAGTGAATTTTAA
CTCTAAATGTTGTTCACCCTTCAGGGGGGGTCAAGCAGTTACTCCGGAAC
ACTTTCTTGATGGGAGATATCCAAAAAAGAATTTTTTTTACAGTCTAAAG
AAAACAGCGAATCAAAACTATACTCTTTTTTATAAAAAAAAGTTATAAGC
ACACGAGGCTGAAAATTGACCAAAACCTAAGAACGAATTAAGAACAATCC
TGAGCCTCAGATATCAGGAATCCCCCCCGGACATTCAAGGTAAATGACTT
ACCAGACGTGTGGCACTTAATAATCGGTTTTTCAAGGTTCAGCTAGTGCA
CCGTAGGGGTATGTTTTGACCAGTGCAGTACTGTCAGGGTAGAAAATTAC
CTTGTTCCTATGAAAATTTTCTCTTTTAGGTAGGAAATTGAATCCCCAGA
TTAGCATCAGCAGGCTTTTTGTCAAGAAATAACTAAGAACTAAAAACTTA
GTCTCGAAAAAAAACTCATTGCCCTAAGGGTTGCAACAAAAGGAAAAATC
GCGAGAAAACCTCGATTTTTGTCCTTCAAAAGTTTAAATTTCGGAAAAAA
GTCACGATAAGAGTCCCTCCTAAACTCCCAAACTTTCGACTTTTTTTCTT
CATTTTTTTTCAAGCCATTTAGCATCAGCAGGCTTTTTGTCAAGAAATAA
CTAAGAAGTAAACCATGAACAGTCAACCTAATCAACCAAAAGATTTAGTT
TGTCTCGGCCTCGCTAGTGGGCAATTTTTGGACCTACCCCGGTGGGGTAG
AGGTCCTATAAATTAACCGATGTCCGTTCGTTCGTTCGTCTGTTCGTTCG
TCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTC
TGATTTTTGGCACAATGATTGGCACAATGATGCAAAATGGCAATGCCCAA
AATGTGACGGAGCCCGATTTTGGAAGAAAAAAAATTTTCCGGCCGAAAAT
GCCGGAAATATGCCGGAAAAACAGGTTTTTTGGCATTTTCTCGAGATTTT
ATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCC
CAAAACATGGCCGAGTCCGATTTTTGAAAAAAAGATTTTTCCGGCCGAAA
ATGCCGGAAATATGCCGGAAAAACAGGTTTTTTGGCATTTTCTCGAGATT
TTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATG
CCCAAAACATGGCCGAGTCCGATTTTTGAAAAAAAGATTTTTCCGGCCGA
AAATGCCGGAAATATGCCGGAAATCACCGTTTTTGCAGATTTGAATTGGG
CTTTTTCCATATATTTCTCTGTTTTTTCACTTAAAAAGATTATTGATAAC
AATGCCACCATCAAGCATGATTCAATTGTCAATAAAACTTTTGCAATTTT
GCAACCGGAACTTTCTATTTCTTTTTTCCCTAAACCCCTCCCCCCCATCA
ACAATCAATGATGACATTTAGTGCATTTTCGCTAAGCGCTATATTTTCTT
AATGATTGTTTTTCTCCTTATTGCTATCTAAGTTTCATCATCAGGTAGGT
CCATTCAGCATGTTGCTTGTTATTTTTATAACATATTCATAAGTGTCGAT
CAAAATACGTTGGTTTGCATTCAAGAAAATAAACGACTCAAACGGAAAAA
GCCATTTCAGCGAAAATAAAATGTTACCAGAATTTCGTTAACCTTTAGAC
ACCGCTGTTTTTAAAAACAGCGCGCGCTGCTGCCGCTGTTTTTTTCATGA
AAATGGAGGTTTCGCGGAAAATGTCATAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTTT
ACGATTTTTTCACTTTTTTTCTTTTTTTTGACAAATTGAATGAAAAAAGT
GGGTACAAAGTAAAGATTGGTCCCAGAAAAAATATTTTGTTTTAATTTAT
GTTATAAGCCACCATTGCGTGAAATTTCAGGGCTGAAGAAGCTCATTTCA
TCTCAGAATCTAAGTTTCGGTGAAGCACACTTTTCCACCAAAATCGACGT
AAATCGACACTCTGGCCACAACAGGTAAAATAAGTGGTCCCGTTGCTCTA
AAATTGGCCCTGCACTTACCCTAAGCCTGTAAAATTACTACAATAATCAT
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTTTAAAAAATGAAC
CTTCACCCCTATCCTGTCTGCTAAATTTTACAGAATAGAAAAATTCAAAC
TGGTCTTTATTTTATTAAACTTTGAAAGGACCGCAGTATCAAAACGTACG
TGGTACGTCTCTCGGCCTGTATATATGACGTACGTGGTACGTCTCTCGGC
GGCTAAAGGTTAAATTGTCAAAAGCTTCTCCTACGGCGCCCTAAAAATTC
AATCGAGAGTAATATCCTTATTCGTTTGGCAGTTTATTGTTTCTTTTGCT
CGAAAAGTATTTTCCCTACAATACTCGCTTTAGATTTTCTTTTATCTCTT
ATTTTCACCCTTAGACTTATTAAAGAATTTCGAAAGTCATTACTCGTGTC
CTATCTGCTTGGACATTGCTGACGATGCAGTGGAGTGTACGAATTGCTTT
AAGATTTATTGCGGTGAATGTACAGAAGGAATAAACACGTGTCCCAGTTG
TCGCTGCACACCTTCTGCATGGCAACCAAGTCGTATTGCTCGACAGATCA
TTGATAATCTAAAAACCGATTGTCCTAATGATGGATGCAAGGAGAAGCCA
ACGCGGTCGAATCTGAAAGTTCATTTAGAGAAATGCGAATGGTCGCGTTG
ATTGCTACCTGTGACGCACTGTATGTATAGGGTGTCCGTAAAAAATATGG
GTTTGGCTACCAATTTTAGAATAATGTAATACCTTTTAGGAAAGCAAAAT
TTAGTGTTTAGCACACTCGTGGGTCCAAAGTGTCTATTACCTTATATATT
TTCGCGGGTACTAAATTTTCGCGAATCGCGAAATTTCTTCCGAGAAACAT
GTTTCGCGAGTATTAAATTTCGCGATTGTCACCTTCTAAAATTTTTTGCA
TGTATTAAATTTCACGATTCACTTAATCGAATATTAAAGAAAAGGTCTAG
TTTGACATGAAAACGACTTATTTTGTTTGAAACACAACATATTGGCTGAA
AAAATGGTATCAAAAGTGTAACACAATGTAAAAAGAATTTTCAACCTATT
TTGAAAATATTTTGCGTGTATTTAATTTCGCGATTTTGTGTTTTTGAAAA
ATTTAAACAACACAAAATTTCGCGAAATTTTGCCTAAAAAGTCGCGAAAT
TAAGTACACGCTAAAATATATACACTTTTATCGCGAAATTTTGCCTAAAA
AGTCGCGAAATTAAGTACACGCTAAAATATATACACTTTTAAGGTATTTC
CAAAGTTTTCTAGCTAAAACATGGAAGGAAGGAAGTATTTTGGAAAACGG
AGTAAAATCAATGGCGAAATTATTTTTATTTTGTACATGTAATACCGAAT
TCTAATTTAATTCAAGAAAAATCTCTAAAATTATATGTAATTTATGCGTA
ATTTATATTAAAAATAATCAACTTTTTGCTATTCATTTTTATAATTTGTG
ACCATTACTTATTCATTTACTAATCTTGTCTTAATCCTTGATTTCTTGAG
ACATTTTTTGAAGAATCAGACCGCAAATAAATGCCTAAAAAAAGTCTAGT
AGTTTCAATTTCAAGATCCTTTTTGTGGCAAATTGTAACGAAGATAGCAT
ACACTTTGTATGTTCCAGTCTTTGAACTAATTAATTTTTTTTTCAGCGCC
AAAAAAATTATAAAAATGATGTAATAATAGTTAACGCATACCATCCAACA
TTCAACATACTATGGCTTCGAAATCTTCTAAAAGATATTATATTTTGTTG
AAAGATATTGTTGGGTTCCAGAAAAAAAGTAGACTTCTGAGAGCAAAAAC
TTTGGAACAGTACCAAGCATTGATGGGAGAAATCTTTTATAAAGAAGAGA
AAAAGAATGAATTTGATGAATATATGTTTGTGTCAGCTGAAAATCAAGAC
CGACATGTGAGTTGTATAGAAGAGAATTTCAAACCCCTGCCAAGCAAGCT
GTTCAAAATATTGATCGCTGTGCCATCTAAGATTGAACGAATATATTTGT
TTAATTCTGATCAAATGGTGAAAAAGATATTGAACATTGAAGTTGGTGAT
ATGGTTGATGTTGAGTTAAACAATTCTGAAGGATTCAAAACGGTTTCGAG
TGGGAGGGTTGGCTTTGTTGGACAAATACAAGGAAGGCTTGGAGAATATT
TTGGAATTCGCTTTGAAGTAAGTGATTGTTGTTTTATCCTTTATTTTCAT
AATGATCATAACCTCTTGTTGGCGCTATTATTCACTTTGATTTAGTATTC
CTTTTTAAAAGCATTTTCATTAAATTAGTTTTCCTTCTCTGCGAGTTATT
CCCATTACAAAAAAATATACCTAAGCAAAGCGCTGTCCCATTTTTTTGCA
ACCTGCCTTAAGATTCTTGGAGTTCTTAGATAATTATAATATTTGATGGT
ACTAGATTTGAAAAATGAATTTGAAAATGAAAATTAACAGACCGTTACCC
CGTTAACATGCACATGTCCATTGACCACCTGGAAACTTACATAGTTTAAT
ATGTTTGCTATCCCTCATGACGAAATGTCTAATAAATTCTTACTCTGTGT
CTAGAGGAGTACATCTTTGGAAAAATGTTTTTTGATTATACTTAACATTA
TTCATGTCCTCCTACCATTTTCCTCACACAGCATCTTTAAACAAAATATT
GATTCGAAATTTCTACTTTCCTTCGCCTTGGCACAATATTCTTTTGTTTA
TTCTATTTGTCAGCATATAAGCTATTCTCATGCTTAAAATAGTTTGCACT
CTACCACAGAGACTCGATAAATATTTTTCACATTCGCGAAGAAAATGTTT
TTCTTGTAAATTTGTTACCTGTCCCTCCAAGATCCGACCGTGAAAATGTG
TACATATCAACCAGGTACCACAATAAGTATGTTGCATCATTTTGGGTACA
AATGCTAAAATAAATAGTAGGGGGGACTTTTTTTGGGAATTTTTATGTTG
AACCATCTTTTTGGACCTGGGGTGGAGGGTAACCTTTGTCCGTTCGTTCG
TTATTAGCTTTCCTCGTGATTGGCTCATTAGTTTTTTCTGATTTTTTGCA
CAAAGATGTGTAACTATAAACCCTCGAATGTGACGGAGCCCGATTTCAGA
AAAAAAAATTTGGGGGGCAAATTTGGGCCAAAATACAGCTAAGAAACTGG
TTATTATTTAAATCCTTTCTTACTCATACCTCGTCTAACAGTTATCGCTT
GTGCCATTCTAAAGGTATTTTCCGTCTCTCTTATAGATGATGTCACTATA
CTTGACCTACTTGACAATGTGGGTGTGGTCCATGAGTTGTCAGCACAGCT
AGATGATTATCAGAACCGCTGGTATCTCCGTCTCGCTCAATGGTTAAGTA
AGGAAAGATTGATCAGTACTACCAAGTTTGACCATTTAGAACGTGCTTTT
CATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAACGCAAACAAAGTATA
TCACCCTGACGATGCAATCAGTAAACTAAAGGAATGTGCTGTGAAGCACC
GTCGTGGAGATGTTATGAAAATTATCGACCACGTGGCAGACGATTTAAGG
ATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATCGCTGATCTCTTGGA
TCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTTTGCCTCACACTTTG
GATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTGAACGCACTAAACCT
GGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTGTGCCGCAACGAAAA
CCCAAGTCTCACTGTTAACCACTTAATCAGATGGGCGAAGAAAGCAGGAA
GGAATGA

Coding sequence (CDS) from alignment at sc0000077:541485..547891-

>TCONS_00007492 ID=TCONS_00007492|Name=TCONS_00007492|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000077:541485..547891- (Clytia hemisphaerica)
ATGATGTCACTATACTTGACCTACTTGACAATGTGGGTGTGGTCCATGAG
TTGTCAGCACAGCTAGATGATTATCAGAACCGCTGGTATCTCCGTCTCGC
TCAATGGTTAAGTAAGGAAAGATTGATCAGTACTACCAAGTTTGACCATT
TAGAACGTGCTTTTCATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAAC
GCAAACAAAGTATATCACCCTGACGATGCAATCAGTAAACTAAAGGAATG
TGCTGTGAAGCACCGTCGTGGAGATGTTATGAAAATTATCGACCACGTGG
CAGACGATTTAAGGATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATC
GCTGATCTCTTGGATCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTT
TGCCTCACACTTTGGATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTG
AACGCACTAAACCTGGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTG
TGCCGCAACGAAAACCCAAGTCTCACTGTTAACCACTTAATCAGATGGGC
GAAGAAAGCAGGAAGGAATCCCCCCTCACTGCTTACAAACAAAATGGATG
TCATCCTTAAGGCTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAAT
GCAACATGCTCCATGCCTTTAAAATATGTGATTGTTTTTTTAGATATTCC
TGATGGTGATAGTGTTGTCGATGAAGAAGAAGATAGTTCACAATATGGCA
ATGATGTCACTATACTTGACCTACTTGACAATGTGGGTGTGGTCCATGAG
TTGTCAGCACAGCTAGATGATTATCAGAACCGCTGGTATCTCCGTCTCGC
TCAATGGTTAAGTAAGGAAAGATTGATCAGTACTACCAAGTTTGACCATT
TAGAACGTGCTTTTCATGGTGGCGGCAGTCCCACATTAGCTTGGCTTAAC
GCAAACAAAGTATATCACCCTGACGATGCAATCAGTAAACTAAAGGAATG
TGCTGTGAAGCACCGTCGTGGAGATGTTATGAAAATTATCGACCACGTGG
CAGACGATTTAAGGATGTCAGTTCTATCGTTGCAAGTTCAACATCAAATC
GCTGATCTCTTGGATCAAACAATTGTTGGCGCAAGTAATTGGGAATCTTT
TGCCTCACACTTTGGATTTGACTACTCTAGTCTGAAGATGTTTCGAGCTG
AACGCACTAAACCTGGTGATTTTAGCCCTACTAAATGGCTTTTAGAATTG
TGCCGCAACGAAAACCCAAGTCTCACTGTTAACCACTTAATCAGATGGGC
GAAGAAAGCAGGAAGGAATCCCCCCTCACTGCTTACAAACAAAATGGATG
TCATCCTTAAGGCTTGGGGACACGAGAAGTTTTTTTCGCGTTGGTGCAAT
GCAACATGCTCCATGCCTTTAAAATATGTGATTGTTTTTTTAGATATTCC
TGATGGTGATAGTGTTGTCGATGAAGAAGAAGATAGTTCACAATATGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004225XLOC_004225Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007492-proteinTCONS_00007492-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007492-exon-sc0000077-1575043694:547710..547891TCONS_00007492-exon-sc0000077-1575043694:547710..547891Clytia hemisphaericaexon
TCONS_00007492-exon-sc0000077-1575043694:541485..542055TCONS_00007492-exon-sc0000077-1575043694:541485..542055Clytia hemisphaericaexon
TCONS_00007492-exon-sc0000077-1510915933:547710..547891TCONS_00007492-exon-sc0000077-1510915933:547710..547891Clytia hemisphaericaexon
TCONS_00007492-exon-sc0000077-1510915933:541485..542055TCONS_00007492-exon-sc0000077-1510915933:541485..542055Clytia hemisphaericaexon
TCONS_00007492-exon-sc0000077-1491911889:547710..547891TCONS_00007492-exon-sc0000077-1491911889:547710..547891Clytia hemisphaericaexon
TCONS_00007492-exon-sc0000077-1491911889:541485..542055TCONS_00007492-exon-sc0000077-1491911889:541485..542055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:541485..547891 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.438237 tpm) - - (18.9085 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31755	1.34597	0.448278	0.438237	13.0408	8.98336	18.0788	18.9085	10.0997	15.7867	8.80685	8.42229	2.75703	3.16065	1.584	3.06422	3.68269	3.54684	2.74192	2.99532	2.62827	2.09215	2.40894	2.6808	9.52036	6.78366	3.17453	3.56352	1.97056	2.61111
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011029DEATH-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
100200300400500600700Sequence
Match NameE-valueIdentityDescription
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