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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007364 ID=TCONS_00007364|Name=TCONS_00007364|organism=Clytia hemisphaerica|type=transcript|length=3421bpRun BLAST on NCBI protein sequence of TCONS_00007364-protein >TCONS_00007364-protein ID=TCONS_00007364-protein|Name=TCONS_00007364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1032bp MRSQNLHKYEENNIQTDNQEYTPSEEAPLYPTEISFQTQDKTIIRCSVNGRun BLAST on NCBI transcript from alignment at sc0000076:97316..126547+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007364 ID=TCONS_00007364|Name=TCONS_00007364|organism=Clytia hemisphaerica|type=transcript|length=29232bp|location=Sequence derived from alignment at sc0000076:97316..126547+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:97316..126547+ >TCONS_00007364 ID=TCONS_00007364|Name=TCONS_00007364|organism=Clytia hemisphaerica|type=CDS|length=40287bp|location=Sequence derived from alignment at sc0000076:97316..126547+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007364 vs. Swiss-Prot (Human)
Match: FBW10 (F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=2) HSP 1 Score: 269.24 bits (687), Expect = 8.545e-75 Identity = 181/654 (27.68%), Postives = 309/654 (47.25%), Query Frame = 3
Query: 675 EYLSWYAQSTEWTKHNFLFGLLKLCSAKLIKLVND-----FLTEK--VQGVDQ-ATHFASSPRCITEESSMTLPAQISTNSHAERAARCKS-APARRPISAMRSPPKAGWR---RLMSAKERSVTFKTDDQQVERVTDEVLGXXXXXXXXXXXXXXKTSFAQNVTQSVSRCTPLQNVSDLPEIGDEEDDHLTISNSLTFSECPQRTIDFIRQLPVQISKKIFGFLSESELFGFRLVSTHWYFLAEQTKKEFILNQIASEDVMMMQATGAKVPNPVYARKVPVHIAKVDHHGYPIINIEAKHVDIETLVNELTDLDMETCYDGFETRKCMMEERNVLCSSYNVFVVTKKKDIHRKIHFTNGRTLVSGSFDRKVLVYDINSGK-LTRTIKGHTGSVKCVFVLEKKGLIISAGYDTSARIWSLRTGKCLRLLRGHRKTVIALSANDKYIASSATDQTTRIWLTDTGQCKLIIPAKSVVRVVRLKGYLLMTGNDAGVXPGKSVVRVVRLKGYLLITGNDAGVFTVWDIEENKVLKKMSDHKAAITCVRMLENHYLSGSLDTYVILWSRVETFMKPLVTYRHPQAVLCMEVLYCRIITGCLDGKVRVWNMLNGDCLRVIRGNSKNDAITHLFANEYRLVVNTLNCVLVYYFVKKDWDYT 2597
E L W+A ST+WTK N+ LL++C+ KL+ + FL E+ + G++Q T SP + SS + +Q+ + + + S AP + S P+ WR R +S R + K D ++K + P + DL +I D S + DFIR LP+ +SK I L L VS HW +A+Q K + + + +Q + + +P YA KV + + K+ G ++ KH + + + ++ T Y ET++ ++EERNV C +YNV +++ D +R IH++ G L++ S +RK+ + DI K + +GH GSV+ +F+ E++ ++S YD S R W L++G C R+ GH+ T+ + + S D ++W DTG+C ++ R K +L T R+ +++ + G+ VW I +++K +S H+ A+ C+ + H LSGS D V+ WS V + + L+ ++HP+ VL + +L+ R+I+ C DGK+R++N LNG+C++V++ N + D + F R+VVNT + VL++ F W Y
Sbjct: 120 EILYWFANSTQWTKANYTLLLLQMCNPKLLLTAANVIRVLFLREENNISGLNQDITDVCFSPE--KDHSSKSATSQVYWTAKTQHTSLPLSKAPENEHLLGAASNPEEPWRNSLRCISEMNRLFSGKGD-------------------------ITKPGY-----------DPCNLLVDLDDIRD-------------LSSGFSKYRDFIRYLPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVKMDLSAHGFIQNQITFLQGSYTRGIDPNYANKVSIPVPKMVDDGK---SMRVKHPKWK--LRTKNEYNLWTAYQNEETQQVLIEERNVFCGTYNVRILSDTWDQNRVIHYSGG-DLIAVSSNRKIHLLDIIQVKAIPVEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGVCTRIFGGHQGTITCMDLCKNRLVSGGRDCQVKVWDVDTGKC---------LKTFRHKDPILAT----------------RINDTYIVSSCERGLVKVWHIAMAQLVKTLSGHEGAVKCLFFDQWHLLSGSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIYNFLNGNCMKVLKANGRGDPVLSFFIQGNRMVVNTESNVLMFQFEHIKWQYA 691 The following BLAST results are available for this feature:
BLAST of TCONS_00007364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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