TCONS_00007364-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007364-protein
Unique Name	TCONS_00007364-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1032

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007364-protein ID=TCONS_00007364-protein|Name=TCONS_00007364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1032bp
MRSQNLHKYEENNIQTDNQEYTPSEEAPLYPTEISFQTQDKTIIRCSVNG
PLHCQQCESCRLQEKSVSAKTWFTSLSFNNQRVFLQQLIFLSDDIAEKLG
SVLSSLVSKDFHYSSSKLKYESFGNDLEIDFTNHSLDISKMEELINDEYL
SWYAQSTEWTKHNFLFGLLKLCSAKLIKLVNDFLTEKVQGVDQATHFASS
PRCITEESSMTLPAQISTNSHAERAARCKSAPARRPISAMRSPPKAGWRR
LMSAKERSVTFKTDDQQVERVTDEVLGSSPSRHSRPASSLSKTSFAQNVT
QSVSRCTPLQNVSDLPEIGDEEDDHLTISNSLTFSECPQRTIDFIRQLPV
QISKKIFGFLSESELFGFRLVSTHWYFLAEQTKKEFILNQIASEDVMMMQ
ATGAKVPNPVYARKVPVHIAKVDHHGYPIINIEAKHVDIETLVNELTDLD
METCYDGFETRKCMMEERNVLCSSYNVFVVTKKKDIHRKIHFTNGRTLVS
GSFDRKVLVYDINSGKLTRTIKGHTGSVKCVFVLEKKGLIISAGYDTSAR
IWSLRTGKCLRLLRGHRKTVIALSANDKYIASSATDQTTRIWLTDTGQCK
LIIPAKSVVRVVRLKGYLLMTGNDAGVXPGKSVVRVVRLKGYLLITGNDA
GVFTVWDIEENKVLKKMSDHKAAITCVRMLENHYLSGSLDTYVILWSRVE
TFMKPLVTYRHPQAVLCMEVLYCRIITGCLDGKVRVWNMLNGDCLRVIRG
NSKNDAITHLFANEYRLVVNTLNCVLVYYFVKKDWDYTAPRNTNESYRPC
VAHVNERPLHSQSRALKVQCVGSPIHRQQSASPLRCPSPDDFRSNELRRL
ESRSCSSIGHHISRMRKTMSQPYISNMSFVDDIKSSVTCHINRTNIQSRI
ELQRNESPPPFVKDVMPMRKEINENHKEIERDLSRNKFKSRAKCRSAPAN
RLQQLPRNERGLTSSASQKTNIAENRIVLPVKTKPLRKISTPSKRVIGKH
KPVGENELADLKIKTFTFQLKDEYDRSVITRR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004143	XLOC_004143	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007364	TCONS_00007364	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 660..697 e-value: 0.048 score: 22.8 coord: 702..738 e-value: 0.019 score: 24.1 coord: 556..593 e-value: 0.0015 score: 27.8 coord: 473..511 e-value: 31.0 score: 7.6 coord: 514..553 e-value: 6.1E-6 score: 35.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 515..553 e-value: 0.013 score: 16.3 coord: 557..592 e-value: 0.0027 score: 18.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 725..747 score: 8.704
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 563..592 score: 9.84
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 521..562 score: 12.447
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 639..924 e-value: 2.9E-20 score: 72.2
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 550..638 e-value: 3.9E-15 score: 55.1 coord: 469..549 e-value: 3.1E-18 score: 65.3
None	No IPR available	GENE3D	1.20.1280.50		coord: 335..400 e-value: 6.2E-7 score: 29.0
None	No IPR available	CDD	cd00200	WD40	coord: 494..738 e-value: 9.98172E-40 score: 149.022
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 725..739
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 494..747 score: 29.003
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 491..758
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 342..391 score: 9.63
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 342..380

Blast

[Close]

BLAST of TCONS_00007364-protein vs. Swiss-Prot (Human)
Match: FBW10 (F-box/WD repeat-containing protein 10 OS=Homo sapiens GN=FBXW10 PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 4.281e-85
Identity = 207/751 (27.56%), Postives = 351/751 (46.74%), Query Frame = 0

Query:   54 CQQCESCRLQEKSVSAKTWFTSLSFNNQRVFLQQLI--FLSDDIAEKLGSVLSSLVSKDFHYSSSKLKYESFGNDLEIDFTNHSLDISKMEELINDEYLSWYAQSTEWTKHNFLFGLLKLCSAKLIKLVND-----FLTEK--VQGVDQ-ATHFASSPRCITEESSMTLPAQISTNSHAERAARCKS-APARRPISAMRSPPKAGWR---RLMSAKERSVTFKTDDQQVERVTDEVLGSSPSRHSRPASSLSKTSFAQNVTQSVSRCTPLQNVSDLPEIGDEEDDHLTISNSLTFSECPQRTIDFIRQLPVQISKKIFGFLSESELFGFRLVSTHWYFLAEQTKKEFILNQIASEDVMMMQATGAKVPNPVYARKVPVHIAKVDHHGYPIINIEAKHVDIETLVNELTDLDMETCYDGFETRKCMMEERNVLCSSYNVFVVTKKKDIHRKIHFTNGRTLVSGSFDRKVLVYDINSGK-LTRTIKGHTGSVKCVFVLEKKGLIISAGYDTSARIWSLRTGKCLRLLRGHRKTVIALSANDKYIASSATDQTTRIWLTDTGQCKLIIPAKSVVRVVRLKGYLLMTGNDAGVXPGKSVVRVVRLKGYLLITGNDAGVFTVWDIEENKVLKKMSDHKAAITCVRMLENHYLSGSLDTYVILWSRVETFMKPLVTYRHPQAVLCMEVLYCRIITGCLDGKVRVWNMLNGDCLRVIRGNSKNDAITHLFANEYRLVVNTLNCVLVYYFVKKDWDYTA 789
            C++CE+C L  K  S K WF  ++  +QR FL  ++    S  +     ++L +   KDF Y+ S++        +     N  LD  K  E    E L W+A ST+WTK N+   LL++C+ KL+    +     FL E+  + G++Q  T    SP    + SS +  +Q+   +  +  +   S AP    +    S P+  WR   R +S   R  + K D                         ++K  +            P   + DL +I D              S    +  DFIR LP+ +SK I   L    L     VS HW  +A+Q K +   +      +  +Q +  +  +P YA KV + + K+   G    ++  KH   +  +    + ++ T Y   ET++ ++EERNV C +YNV +++   D +R IH++ G  L++ S +RK+ + DI   K +    +GH GSV+ +F+ E++  ++S  YD S R W L++G C R+  GH+ T+  +      + S   D   ++W  DTG+C         ++  R K  +L T                R+    +++  + G+  VW I   +++K +S H+ A+ C+   + H LSGS D  V+ WS V  + + L+ ++HP+ VL + +L+ R+I+ C DGK+R++N LNG+C++V++ N + D +   F    R+VVNT + VL++ F    W Y  
Sbjct:   26 CRKCETCVLAWKIFSTKEWFCRINDISQRRFLVGILKQLNSLYLLHYFQNILQTTQGKDFIYNRSRINLSKKEGKVVKSSLNQMLD--KTVEQKMKEILYWFANSTQWTKANYTLLLLQMCNPKLLLTAANVIRVLFLREENNISGLNQDITDVCFSPE--KDHSSKSATSQVYWTAKTQHTSLPLSKAPENEHLLGAASNPEEPWRNSLRCISEMNRLFSGKGD-------------------------ITKPGY-----------DPCNLLVDLDDIRD-------------LSSGFSKYRDFIRYLPIHLSKYILRMLDRHTLNKCASVSQHWAAMAQQVKMDLSAHGFIQNQITFLQGSYTRGIDPNYANKVSIPVPKMVDDGK---SMRVKHPKWK--LRTKNEYNLWTAYQNEETQQVLIEERNVFCGTYNVRILSDTWDQNRVIHYSGG-DLIAVSSNRKIHLLDIIQVKAIPVEFRGHAGSVRALFLCEEENFLLSGSYDLSIRYWDLKSGVCTRIFGGHQGTITCMDLCKNRLVSGGRDCQVKVWDVDTGKC---------LKTFRHKDPILAT----------------RINDTYIVSSCERGLVKVWHIAMAQLVKTLSGHEGAVKCLFFDQWHLLSGSTDGLVMAWSMVGKYERCLMAFKHPKEVLDVSLLFLRVISACADGKIRIYNFLNGNCMKVLKANGRGDPVLSFFIQGNRMVVNTESNVLMFQFEHIKWQYAV 692

The following BLAST results are available for this feature:

BLAST of TCONS_00007364-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007364-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBW10	4.281e-85	27.56	F-box/WD repeat-containing protein 10 OS=Homo sapi...	[more]

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TCONS_00007364-protein (polypeptide) - C. hemisphaerica