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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=transcript|length=2485bp tttttaaattgttccaattttgataattttatatTAATTCCTGTAGCTAC AATGATAAATGTTTTATAAATTTAGGAAACCTTCATTAATGGAAGGAATA AAGTTGtaatcactttttgaaaaatgcttttctCATCATGCAATCAACTT TCGTCTGATTtaacaaattagaaaaaataaaaataattttagaaaaaaga gaataatagaaaattttaaacaaaaacaaaaaaccacaaattgcaaaaat taatttgaCATCAGCAAACCTTTCAGGATCTATCACTATCAGTAACATTT ACAATTTCAATTTactattatcaaaaacataacacATTTCGATcacaaaa aatgccaaaaatgaaTTTAGAAATAATGCAAAGAATTtgaagtatttaga aaaaggaAGATTATAATTGATCCTACAAGTCATTCATGGTttaaaaggta aaaaataatataatggCTTATAGAAATCCTGAAATCTAACAACATCACAT AACAGAACATTGTTGTGGCATCGGAGGAATTTGATTAGAATCTGAGATAC CAGCCATCATATCAGCAGGTGGTTGACCAAATACCTGCATTTTCTGCATA AGCTCCACAACTTTGGAAGTTCTTTCTTTCTTAGTTTGTTCAGTGTCAGT ATCAGCCTCTTGCTCAAAGAGATCACACAACTGTACTACAATGTCATTCT GGCttttatatttcaaataatcttcaggagttaatttttctttattttct gaCAACCATGAAGGATATCTTTCTTTGATTTCACTCAGGGAAGGATACAA TAAATCTTTTGTAAGTAAATTTTCCATCATCCCTTGCATCATGCCCATAA AAGCATCACCCTCAGGAAAGATAGTATCACCCTCAGCTCCACCTTGACCT TGTTGTGTTTCCATACTAGCTTGCATTTCTTTCATCATTTCACTAAAATC ACCACCAAAGTCTGCACCAAAATCCTGGCCCTCCATGTTCAGATCATTAA AATTATTGGTTAAATCTTTCAATGCGTTTTTCATATGTTCGTCAAAATTA GCACCTTCTGGTGCTGTACCAGGAAAGCCACCCATTGCACCACCCATCGG AAATTGCTTTTGGAAGCTATCAAATTCCTCCATCAAGCCTGGATCTTCAC TAGACATTTGCTGTAAAACTTCATTCCAACCTTCTGACATTTTTAGGAGA GCATCATCATCCAGAAAATTACCAAGATCAGAGCCCTGATCATGCTGttc agtttttttctcaaccttTTTAGGCTTTGGTGGCGGTTTAACAAAATCAC TTAATGCATCATCTAGCAGTGCATCCaattcatcatcatcaacaaCTTCT TTTGGTGGACAATCATTGTTTTCTTGCTTCAGATTATCCCCTTTATCATC AGCCATGTTTGAGTGAACTATCTTTTCTAGGCCAagtaaattataaaaat aatgaactttaaaagtaaaatgacaaaaaagaaagttagTATAGTGACCC CCCCATGTCCACTTTTACGCAAATCGAccgaggtctgttagcacaaagat acttcagatggtgattaaagcatgaaattcggcacagatgatcctcagag ggtctaaaacttaattctaaacagtaacaccaaattttgccacctggcca cctgccagatggaCCATTTTGTCCATTTGCATTCGgtcaaaagaaaactt ttttcacctGAAAAATATCAGCTAGTGGAAATACCTCCACTtaaagcatg ttcaaagttcacaataacgacTTATTAGAACAAGTTATTAAGACTAAAAG TCAGCACTCCGTGGTTGAGACCAATGACGTTTATACCGtgagaaagggta acttgcatcagtggaggctaacacgCATCGCCCTCAGATTAAAGacttgt ctggtcattaaagtttgatttgagttaatgaacggcgtattaaaaaatac acaatttctcttttgcaatgtctgtgcactctactaagaggaacgaagaa atgattgataaacttggtggagttatcaaaacaaatttgttgtcaaaaag atttaacagtaagtgaaaatacagagaccagatatcaaccagtcccatgt tacgaccaatcgtcccaagttagagcagttgacggtaccaattctaaaaa aaatccaatcaaagatggcagttATAGAAAAAACGTTGGTATGAGGGAGT CTCCCGCCCAATCCAATGCAGGAGAGTTATGGtttggatctttcggattc tacttgttctcttttctagaatttttctTGTACACAGTAtgggaaatagg tcaaggcagatatctagcaaaagaaattctccagaggtttaTTATTGTAT GAATTTTCTGGGCTCAAAGACGTTTGGTCGCCAACAGtaacagtcaggaa cagtcgccttattaggagacgcctcctgattaggagacccgtctcctaat caggaggttcacgtctcctaatcaggagacgggtG Run BLAST on NCBI protein sequence of TCONS_00007358-protein >TCONS_00007358-protein ID=TCONS_00007358-protein|Name=TCONS_00007358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MADDKGDNLKQENNDCPPKEVVDDDELDALLDDALSDFVKPPPKPKKVEK KTEQHDQGSDLGNFLDDDALLKMSEGWNEVLQQMSSEDPGLMEEFDSFQK QFPMGGAMGGFPGTAPEGANFDEHMKNALKDLTNNFNDLNMEGQDFGADF GGDFSEMMKEMQASMETQQGQGGAEGDTIFPEGDAFMGMMQGMMENLLTK DLLYPSLSEIKERYPSWLSENKEKLTPEDYLKYKSQNDIVVQLCDLFEQE ADTDTEQTKKERTSKVVELMQKMQVFGQPPADMMAGISDSNQIPPMPQQC SVM Run BLAST on NCBI transcript from alignment at sc0000075:629330..631814 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=transcript|length=2485bp|location=Sequence derived from alignment at sc0000075:629330..631814 (Clytia hemisphaerica) Cacccgtctcctgattaggagacgtgaacctcctgattaggagacgggtc
tcctaatcaggaggcgtctcctaataaggcgactgttcctgactgttaCT
GTTGGCGACCAAACGTCTTTGAGCCCAGAAAATTCATACAATAAtaaacc
tctggagaatttcttttgctagatatctgccttgacctatttcccaTACT
GTGTACAagaaaaattctagaaaagagaacaagtagaatccgaaagatcc
aaaCCATAACTCTCCTGCATTGGATTGGGCGGGAGACTCCCTCATACCAA
CGTTTTTTCTATaactgccatctttgattggattttttttagaattggta
ccgtcaactgctctaacttgggacgattggtcgtaacatgggactggttg
atatctggtctctgtattttcacttactgttaaatctttttgacaacaaa
tttgttttgataactccaccaagtttatcaatcatttcttcgttcctctt
agtagagtgcacagacattgcaaaagagaaattgtgtattttttaatacg
ccgttcattaactcaaatcaaactttaatgaccagacaagtCTTTAATCT
GAGGGCGATGcgtgttagcctccactgatgcaagttaccctttctcaCGG
TATAAACGTCATTGGTCTCAACCACGGAGTGCTGACTTTTAGTCTTAATA
ACTTGTTCTAATAAgtcgttattgtgaactttgaacatgctttaAGTGGA
GGTATTTCCACTAGCTGATATTTTTCaggtgaaaaaagttttcttttgac
CGAATGCAAATGGACAAAATGGtccatctggcaggtggccaggtggcaaa
atttggtgttactgtttagaattaagttttagaccctctgaggatcatct
gtgccgaatttcatgctttaatcaccatctgaagtatctttgtgctaaca
gacctcggTCGATTTGCGTAAAAGTGGACATGGGGGGGTCACTATActaa
ctttcttttttgtcattttacttttaaagttcattatttttataatttac
tTGGCCTAGAAAAGATAGTTCACTCAAACATGGCTGATGATAAAGGGGAT
AATCTGAAGCAAGAAAACAATGATTGTCCACCAAAAGAAGttgttgatga
tgatgaattGGATGCACTGCTAGATGATGCATTAAGTGATTTTGTTAAAC
CGCCACCAAAGCCTAAAaaggttgagaaaaaaactgaaCAGCATGATCAG
GGCTCTGATCTTGGTAATTTTCTGGATGATGATGCTCTCCTAAAAATGTC
AGAAGGTTGGAATGAAGTTTTACAGCAAATGTCTAGTGAAGATCCAGGCT
TGATGGAGGAATTTGATAGCTTCCAAAAGCAATTTCCGATGGGTGGTGCA
ATGGGTGGCTTTCCTGGTACAGCACCAGAAGGTGCTAATTTTGACGAACA
TATGAAAAACGCATTGAAAGATTTAACCAATAATTTTAATGATCTGAACA
TGGAGGGCCAGGATTTTGGTGCAGACTTTGGTGGTGATTTTAGTGAAATG
ATGAAAGAAATGCAAGCTAGTATGGAAACACAACAAGGTCAAGGTGGAGC
TGAGGGTGATACTATCTTTCCTGAGGGTGATGCTTTTATGGGCATGATGC
AAGGGATGATGGAAAATTTACTTACAAAAGATTTATTGTATCCTTCCCTG
AGTGAAATCAAAGAAAGATATCCTTCATGGTTGtcagaaaataaagaaaa
attaactcctgaagattatttgaaatataaaaGCCAGAATGACATTGTAG
TACAGTTGTGTGATCTCTTTGAGCAAGAGGCTGATACTGACACTGAACAA
ACTAAGAAAGAAAGAACTTCCAAAGTTGTGGAGCTTATGCAGAAAATGCA
GGTATTTGGTCAACCACCTGCTGATATGATGGCTGGTATCTCAGATTCTA
ATCAAATTCCTCCGATGCCACAACAATGTTCTGTTATGTGATGTTGTTAG
ATTTCAGGATTTCTATAAGccattatattattttttaccttttaaACCAT
GAATGACTTGTAGGATCAATTATAATCTtcctttttctaaatacttcaAA
TTCTTTGCATTATTTCTAAAttcatttttggcattttttgtgATCGAAAT
gtgttatgtttttgataatagtAAATTGAAATTGTAAATGTTACTGATAG
TGATAGATCCTGAAAGGTTTGCTGATGtcaaattaatttttgcaatttgt
ggttttttgtttttgtttaaaattttctattattctcttttttctaaaat
tatttttattttttctaatttgttaAATCAGACGAAAGTTGATTGCATGA
TGagaaaagcatttttcaaaaagtgattaCAACTTTATTCCTTCCATTAA
TGAAGGTTTCCTAAATTTATAAAACATTTATCATTGTAGCTACAGGAATT
Aatataaaattatcaaaattggaacaatttaaaaa Coding sequence (CDS) from alignment at sc0000075:629330..631814 >TCONS_00007358 ID=TCONS_00007358|Name=TCONS_00007358|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000075:629330..631814 (Clytia hemisphaerica) ATGGCTGATGATAAAGGGGATAATCTGAAGCAAGAAAACAATGATTGTCC ACCAAAAGAAGttgttgatgatgatgaattGGATGCACTGCTAGATGATG CATTAAGTGATTTTGTTAAACCGCCACCAAAGCCTAAAaaggttgagaaa aaaactgaaCAGCATGATCAGGGCTCTGATCTTGGTAATTTTCTGGATGA TGATGCTCTCCTAAAAATGTCAGAAGGTTGGAATGAAGTTTTACAGCAAA TGTCTAGTGAAGATCCAGGCTTGATGGAGGAATTTGATAGCTTCCAAAAG CAATTTCCGATGGGTGGTGCAATGGGTGGCTTTCCTGGTACAGCACCAGA AGGTGCTAATTTTGACGAACATATGAAAAACGCATTGAAAGATTTAACCA ATAATTTTAATGATCTGAACATGGAGGGCCAGGATTTTGGTGCAGACTTT GGTGGTGATTTTAGTGAAATGATGAAAGAAATGCAAGCTAGTATGGAAAC ACAACAAGGTCAAGGTGGAGCTGAGGGTGATACTATCTTTCCTGAGGGTG ATGCTTTTATGGGCATGATGCAAGGGATGATGGAAAATTTACTTACAAAA GATTTATTGTATCCTTCCCTGAGTGAAATCAAAGAAAGATATCCTTCATG GTTGtcagaaaataaagaaaaattaactcctgaagattatttgaaatata aaaGCCAGAATGACATTGTAGTACAGTTGTGTGATCTCTTTGAGCAAGAG GCTGATACTGACACTGAACAAACTAAGAAAGAAAGAACTTCCAAAGTTGT GGAGCTTATGCAGAAAATGCAGGTATTTGGTCAACCACCTGCTGATATGA TGGCTGGTATCTCAGATTCTAATCAAATTCCTCCGATGCCACAACAATGT TCTGTTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007358-exon-sc0000075-1491911889:629330..631814 | TCONS_00007358-exon-sc0000075-1491911889:629330..631814 | Clytia hemisphaerica | exon |
TCONS_00007358-exon-sc0000075-1510915933:629330..631814 | TCONS_00007358-exon-sc0000075-1510915933:629330..631814 | Clytia hemisphaerica | exon |
TCONS_00007358-exon-sc0000075-1575043694:629330..631814 | TCONS_00007358-exon-sc0000075-1575043694:629330..631814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000075 | supercontig | sc0000075:629330..631814 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006708 | Pex19 |
Vocabulary: Cellular Component
Term | Definition |
GO:0005777 | peroxisome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0005777 |
peroxisome |
Blast
BLAST of TCONS_00007358 vs. Swiss-Prot (Human)
Match: PEX19 (Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.414e-26 Identity = 70/219 (31.96%), Postives = 115/219 (52.51%), Query Frame = -3
Query: 522 WNEVLQQMSSEDPGLMEEFDSFQKQXXXXXXXXXXXXXAPEGANFDEHMKNALKDLTNNFNDLNMEGQXXXXXXXXXFSEMMKEMQASMETQQGQGGAEGDTIFPEGDAFMGMMQGMMENLLTKDLLYPSLSEIKERYPSWLSENKEKLTPEDYLKYKSQNDIVVQLCDLFEQEADTDTEQTKKERTSKVVELMQKMQVFGQPPADMMAGISDSNQIPP 1178
+ + +++++ E+P L+E+F + G+ F +K L L N DL + E+ K M+ G G EGD EG+ + +MQ +M+NLL+KD+LYPSL EI E+YP WL ++E L PE + KY+ Q+ ++ ++C+ FE E TD+E T+K R V++LMQ++Q G PP ++ + ++PP
Sbjct: 87 FEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQ------EFTSCLKETLSGLAKNATDLQ--------NSSMSEEELTKAME-------GLGMDEGDG---EGN-ILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKEL------AGEMPP 274
The following BLAST results are available for this feature:
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